FC871310

Overview
NameFC871310
Unique NameFC871310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2AY_MOUSE (Core histone macro-H2A.1 OS=Mus musculus GN=H2afy PE=1 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 5.190e-22
Identity = 59/122 (48.36%), Postives = 81/122 (66.39%), Query Frame = 1 
Query:  184 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI-----NKSSKE*FVTPSSSR 531
            SRS++AG+ FPVGR+ R +K+              Y AA+LEYLTAE+LELAGNA++D K  R+TPRH+ LA+  DEEL+ L+KG TIA GGV+P+IH  L+     +K   E  +TP  ++
Sbjct:   14 SRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPV-YMAAVLEYLTAEILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITPPPAK 134
[Close]
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2AY_HUMAN (Core histone macro-H2A.1 OS=Homo sapiens GN=H2AFY PE=1 SV=4)

HSP 1 Score: 104.76 bits (260), Expect = 5.190e-22
Identity = 59/122 (48.36%), Postives = 81/122 (66.39%), Query Frame = 1 
Query:  184 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI-----NKSSKE*FVTPSSSR 531
            SRS++AG+ FPVGR+ R +K+              Y AA+LEYLTAE+LELAGNA++D K  R+TPRH+ LA+  DEEL+ L+KG TIA GGV+P+IH  L+     +K   E  +TP  ++
Sbjct:   14 SRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPV-YMAAVLEYLTAEILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITPPPAK 134
[Close]
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2AY_CHICK (Core histone macro-H2A.1 OS=Gallus gallus GN=H2AFY PE=1 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 5.190e-22
Identity = 59/122 (48.36%), Postives = 81/122 (66.39%), Query Frame = 1 
Query:  184 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI-----NKSSKE*FVTPSSSR 531
            SRS++AG+ FPVGR+ R +K+              Y AA+LEYLTAE+LELAGNA++D K  R+TPRH+ LA+  DEEL+ L+KG TIA GGV+P+IH  L+     +K   E  +TP  ++
Sbjct:   14 SRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPV-YMAAVLEYLTAEILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITPPPAK 134
[Close]
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2A5_WHEAT (Protein H2A.5 OS=Triticum aestivum GN=H2A-2 PE=2 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 5.190e-22
Identity = 61/107 (57.01%), Postives = 73/107 (68.22%), Query Frame = 1 
Query:  181 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 498
            V+RS +AGLQFPVGR+ R LK+              Y AA+LEYL AEVLELAGNA+KD K  RI PRHL LA+R D+EL  L+ G TIA GGVIP+I+  L+ K S
Sbjct:   13 VTRSVKAGLQFPVGRIGRYLKKGRYAQRVGSGAPV-YLAAVLEYLAAEVLELAGNAAKDNKKTRIIPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINSVLLPKKS 118
[Close]
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSJ (Probable histone H2A.5 OS=Oryza sativa subsp. japonica GN=Os01g0502700 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.190e-22
Identity = 61/109 (55.96%), Postives = 74/109 (67.89%), Query Frame = 1 
Query:  181 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 504
            VSRS +AGLQFPVGR+ R LK+              Y AA+LEYL AEVLELAGNA++D K  RI PRH+ LAIR DEEL  L+ G TIA GGV+P+I+  L+ K + E
Sbjct:   29 VSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPV-YLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAE 136
[Close]
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSI (Probable histone H2A.5 OS=Oryza sativa subsp. indica GN=OsI_002060 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.190e-22
Identity = 61/109 (55.96%), Postives = 74/109 (67.89%), Query Frame = 1 
Query:  181 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 504
            VSRS +AGLQFPVGR+ R LK+              Y AA+LEYL AEVLELAGNA++D K  RI PRH+ LAIR DEEL  L+ G TIA GGV+P+I+  L+ K + E
Sbjct:   29 VSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPV-YLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAE 136
[Close]
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2A2_WHEAT (Histone H2A.2.1 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.190e-22
Identity = 61/109 (55.96%), Postives = 74/109 (67.89%), Query Frame = 1 
Query:  181 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 504
            V++S +AGLQFPVGR+ R LK+              Y AA+LEYL AEVLELAGNA+KD K  RI PRHL LAIR D+EL  L+ G TIA GGVIP+I+  L+ K + E
Sbjct:   22 VTKSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPV-YLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHLLLAIRNDQELGRLLSGVTIAHGGVIPNINPVLLPKKAAE 129
[Close]
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2A1_WHEAT (Histone H2A.1 OS=Triticum aestivum GN=H2A-9 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 5.190e-22
Identity = 61/107 (57.01%), Postives = 73/107 (68.22%), Query Frame = 1 
Query:  181 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 498
            V+RS +AGLQFPVGR+ R LK+              Y AA+LEYL AEVLELAGNA+KD K  RI PRHL LA+R D+EL  L+ G TIA GGVIP+I+  L+ K S
Sbjct:   13 VTRSVKAGLQFPVGRIGRYLKKGRYAQRVGSGAPV-YLAAVLEYLAAEVLELAGNAAKDNKKTRIIPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINSVLLPKKS 118
[Close]
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2A1_PEA (Histone H2A.1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.190e-22
Identity = 61/105 (58.10%), Postives = 73/105 (69.52%), Query Frame = 1 
Query:  181 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 492
            V+RS RAGLQFPVGRV R LK+              Y AA+LEYL AEVLELAGNA++D K  RI+PRHL LA+R DEEL  L+ G TIA GGV+P+I+  L+ K
Sbjct:   24 VTRSVRAGLQFPVGRVGRFLKKGRYAQRVGTGAPV-YLAAVLEYLAAEVLELAGNAARDNKKNRISPRHLLLAVRNDEELGKLLAGVTIAYGGVLPNINPVLLPK 127
[Close]
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSJ (Probable histone H2AXa OS=Oryza sativa subsp. japonica GN=Os03g0721900 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.778e-22
Identity = 59/105 (56.19%), Postives = 72/105 (68.57%), Query Frame = 1 
Query:  181 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINK 492
            VSRSS+AGLQFPVGR+ R LK               Y +A+LEYL AEVLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+I + L+ K
Sbjct:   19 VSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPV-YLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPK 122
The following BLAST results are available for this feature:
BLAST of FC871310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
H2AY_MOUSE5.190e-2248.36Core histone macro-H2A.1 OS=Mus musculus GN=H2afy ... [more]
H2AY_HUMAN5.190e-2248.36Core histone macro-H2A.1 OS=Homo sapiens GN=H2AFY ... [more]
H2AY_CHICK5.190e-2248.36Core histone macro-H2A.1 OS=Gallus gallus GN=H2AFY... [more]
H2A5_WHEAT5.190e-2257.01Protein H2A.5 OS=Triticum aestivum GN=H2A-2 PE=2 S... [more]
H2A5_ORYSJ5.190e-2255.96Probable histone H2A.5 OS=Oryza sativa subsp. japo... [more]
H2A5_ORYSI5.190e-2255.96Probable histone H2A.5 OS=Oryza sativa subsp. indi... [more]
H2A2_WHEAT5.190e-2255.96Histone H2A.2.1 OS=Triticum aestivum PE=1 SV=1[more]
H2A1_WHEAT5.190e-2257.01Histone H2A.1 OS=Triticum aestivum GN=H2A-9 PE=1 S... [more]
H2A1_PEA5.190e-2258.10Histone H2A.1 OS=Pisum sativum PE=2 SV=1[more]
H2AXA_ORYSJ6.778e-2256.19Probable histone H2AXa OS=Oryza sativa subsp. japo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2BE07FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2BE07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871310 ID=FC871310; Name=FC871310; organism=Citrus sinensis; type=EST; length=737bp
TTTCTTTCTTCTCCTTTAATTTTCATCTCAGAAAAAATTAAAAATAATTA
AATAAATAATTAATTAATTTAAAAGAAGCTGTAGCAATTAGGCGGGAAAA
TGTCGGGCAAAGGAGCCAAAGGACTGATAACAGGCAAAACCACCATTAAC
AACAACAAGGATAAGGACAAGAAGAAACCCGTCTCCCGTTCTTCTCGTGC
TGGTCTTCAGTTCCCAGTGGGAAGGGTCCATCGTCTACTAAAGGAAAGGG
CTGCTGCTCACGGAAGGGTTGGCGCAACAGCTGCTGTTTATACAGCAGCC
ATTTTGGAATATCTAACTGCCGAAGTGTTGGAGTTGGCAGGGAATGCTAG
CAAGGATTTGAAGGTCAAACGTATTACTCCAAGGCATTTGCAGCTTGCTA
TCCGAGGAGATGAAGAACTTGACACTCTCATTAAAGGAACCATAGCCGGT
GGAGGAGTTATTCCTCATATCCACAAGTCCCTCATCAATAAATCCTCCAA
AGAGTAGTTCGTGACACCGTCATCCTCTCGGCTTTGTTTATGTGTGTACT
TTTAGCTGTGCTGAAATATCTAAATGAGAAATGATGCCAAAGATGTGTTA
ATGCTAGGAATCTGCATTCTTCAATCCTCATTTCATGCAGCGACGAATTA
TGGTGCTTGTTTTTTCCCATGTTGGTATTGAACTGTTACTGTTTAATTTT
TAAATAATTCTAAAAAAAAAAAAAAAAAAAAAAAAAA
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