FC871310

Overview
NameFC871310
Unique NameFC871310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2A_ONCMY (Histone H2A OS=Oncorhynchus mykiss PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 6.550e-25
Identity = 63/108 (58.33%), Postives = 79/108 (73.15%), Query Frame = 1
Query:  184 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 504
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K +++
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTEK 123          
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2A_LITVA (Histone H2A OS=Litopenaeus vannamei PE=1 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 6.550e-25
Identity = 63/108 (58.33%), Postives = 78/108 (72.22%), Query Frame = 1
Query:  184 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 504
            SRSSRAGLQFPVGR+HRLL++              Y AA++EYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K +++
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPV-YLAAVMEYLAAEVLELAGNAARDNKKTRIVPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 122          
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2A_CAIMO (Histone H2A OS=Cairina moschata PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 6.550e-25
Identity = 65/106 (61.32%), Postives = 77/106 (72.64%), Query Frame = 1
Query:  184 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 498
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K +
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKT 121          
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2A_ACRFO (Histone H2A OS=Acropora formosa PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 6.550e-25
Identity = 62/108 (57.41%), Postives = 79/108 (73.15%), Query Frame = 1
Query:  184 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 504
            SRSSRAGLQFPVGR+HRLL++              Y AA+LEYL+AE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K +++
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPV-YMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKTEK 122          
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2A4_VOLCA (Histone H2A-IV OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.550e-25
Identity = 65/108 (60.19%), Postives = 76/108 (70.37%), Query Frame = 1
Query:  181 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSK 501
            VSRSS+AGLQFPVGR+ R LK+              Y AA+LEYLTAEVLELAGNA++D K  RI PRH+QLAIR DEEL  L+   TIA GGV+P+IH  L+ K SK
Sbjct:   15 VSRSSKAGLQFPVGRIARYLKKGKYAERIGAGAPV-YLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKSK 121          
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2A4_CHICK (Histone H2A-IV OS=Gallus gallus PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 6.550e-25
Identity = 65/106 (61.32%), Postives = 77/106 (72.64%), Query Frame = 1
Query:  184 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 498
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K +
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKT 121          
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2A1_XENLA (Histone H2A type 1 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 6.550e-25
Identity = 63/107 (58.88%), Postives = 78/107 (72.90%), Query Frame = 1
Query:  184 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSK 501
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K ++
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQSVLLPKKTE 122          
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2A_SIPNU (Histone H2A OS=Sipunculus nudus PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 8.554e-25
Identity = 63/108 (58.33%), Postives = 78/108 (72.22%), Query Frame = 1
Query:  184 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 504
            SRSSRAGLQFPVGR+HRLL++              Y AA++EYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K +++
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERIGAGAPV-YLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQK 122          
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2A_PARLI (Histone H2A OS=Paracentrotus lividus PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.117e-24
Identity = 63/106 (59.43%), Postives = 76/106 (71.70%), Query Frame = 1
Query:  184 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 498
            SRSSRAGLQFPVGRVHR L++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K +
Sbjct:   16 SRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGAPV-YMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120          
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2A_CHITH (Histone H2A OS=Chironomus thummi thummi PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.117e-24
Identity = 63/107 (58.88%), Postives = 77/107 (71.96%), Query Frame = 1
Query:  184 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSK 501
            SRSSRAGLQFPVGR+HRLL++              Y AA++EYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K ++
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYGERVGAGAPV-YLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 121          
The following BLAST results are available for this feature:
BLAST of FC871310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
H2A_ONCMY6.550e-2558.33Histone H2A OS=Oncorhynchus mykiss PE=1 SV=2[more]
H2A_LITVA6.550e-2558.33Histone H2A OS=Litopenaeus vannamei PE=1 SV=3[more]
H2A_CAIMO6.550e-2561.32Histone H2A OS=Cairina moschata PE=3 SV=2[more]
H2A_ACRFO6.550e-2557.41Histone H2A OS=Acropora formosa PE=3 SV=2[more]
H2A4_VOLCA6.550e-2560.19Histone H2A-IV OS=Volvox carteri PE=3 SV=1[more]
H2A4_CHICK6.550e-2561.32Histone H2A-IV OS=Gallus gallus PE=1 SV=2[more]
H2A1_XENLA6.550e-2558.88Histone H2A type 1 OS=Xenopus laevis PE=1 SV=2[more]
H2A_SIPNU8.554e-2558.33Histone H2A OS=Sipunculus nudus PE=1 SV=2[more]
H2A_PARLI1.117e-2459.43Histone H2A OS=Paracentrotus lividus PE=3 SV=2[more]
H2A_CHITH1.117e-2458.88Histone H2A OS=Chironomus thummi thummi PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2BE07FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2BE07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871310 ID=FC871310; Name=FC871310; organism=Citrus sinensis; type=EST; length=737bp
TTTCTTTCTTCTCCTTTAATTTTCATCTCAGAAAAAATTAAAAATAATTA
AATAAATAATTAATTAATTTAAAAGAAGCTGTAGCAATTAGGCGGGAAAA
TGTCGGGCAAAGGAGCCAAAGGACTGATAACAGGCAAAACCACCATTAAC
AACAACAAGGATAAGGACAAGAAGAAACCCGTCTCCCGTTCTTCTCGTGC
TGGTCTTCAGTTCCCAGTGGGAAGGGTCCATCGTCTACTAAAGGAAAGGG
CTGCTGCTCACGGAAGGGTTGGCGCAACAGCTGCTGTTTATACAGCAGCC
ATTTTGGAATATCTAACTGCCGAAGTGTTGGAGTTGGCAGGGAATGCTAG
CAAGGATTTGAAGGTCAAACGTATTACTCCAAGGCATTTGCAGCTTGCTA
TCCGAGGAGATGAAGAACTTGACACTCTCATTAAAGGAACCATAGCCGGT
GGAGGAGTTATTCCTCATATCCACAAGTCCCTCATCAATAAATCCTCCAA
AGAGTAGTTCGTGACACCGTCATCCTCTCGGCTTTGTTTATGTGTGTACT
TTTAGCTGTGCTGAAATATCTAAATGAGAAATGATGCCAAAGATGTGTTA
ATGCTAGGAATCTGCATTCTTCAATCCTCATTTCATGCAGCGACGAATTA
TGGTGCTTGTTTTTTCCCATGTTGGTATTGAACTGTTACTGTTTAATTTT
TAAATAATTCTAAAAAAAAAAAAAAAAAAAAAAAAAA
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