FC871310

Overview
NameFC871310
Unique NameFC871310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2AX_DANRE (Histone H2A.x OS=Danio rerio GN=h2afx PE=2 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 1.117e-24
Identity = 63/106 (59.43%), Postives = 77/106 (72.64%), Query Frame = 1
Query:  184 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 498
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K +
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 121          
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2AJ_RAT (Histone H2A.J OS=Rattus norvegicus GN=H2afj PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.117e-24
Identity = 64/107 (59.81%), Postives = 78/107 (72.90%), Query Frame = 1
Query:  184 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 501
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+I   L+ K ++
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTE 122          
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2AJ_MOUSE (Histone H2A.J OS=Mus musculus GN=H2afj PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.117e-24
Identity = 64/107 (59.81%), Postives = 78/107 (72.90%), Query Frame = 1
Query:  184 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 501
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+I   L+ K ++
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTE 122          
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2A3_RAT (Histone H2A type 3 OS=Rattus norvegicus PE=2 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 1.117e-24
Identity = 64/107 (59.81%), Postives = 78/107 (72.90%), Query Frame = 1
Query:  184 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 501
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+I   L+ K ++
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTE 122          
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2A3_MOUSE (Histone H2A type 3 OS=Mus musculus GN=Hist3h2a PE=1 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 1.117e-24
Identity = 64/107 (59.81%), Postives = 78/107 (72.90%), Query Frame = 1
Query:  184 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 501
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+I   L+ K ++
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTE 122          
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2A3_HUMAN (Histone H2A type 3 OS=Homo sapiens GN=HIST3H2A PE=1 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 1.117e-24
Identity = 64/107 (59.81%), Postives = 78/107 (72.90%), Query Frame = 1
Query:  184 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 501
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+I   L+ K ++
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTE 122          
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2A1_PSAMI (Late histone H2A.1 OS=Psammechinus miliaris PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.117e-24
Identity = 63/106 (59.43%), Postives = 76/106 (71.70%), Query Frame = 1
Query:  184 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 498
            +RSSRAGLQFPVGRVHR LK+              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K +
Sbjct:   16 TRSSRAGLQFPVGRVHRFLKKGNYGSRVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120          
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2A1_HUMAN (Histone H2A type 1 OS=Homo sapiens GN=HIST1H2AG PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.117e-24
Identity = 64/107 (59.81%), Postives = 78/107 (72.90%), Query Frame = 1
Query:  184 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 501
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K ++
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122          
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2A1_BOVIN (Histone H2A type 1 OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.117e-24
Identity = 64/107 (59.81%), Postives = 78/107 (72.90%), Query Frame = 1
Query:  184 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 501
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K ++
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122          
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2A1J_HUMAN (Histone H2A type 1-J OS=Homo sapiens GN=HIST1H2AJ PE=1 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 1.117e-24
Identity = 64/107 (59.81%), Postives = 78/107 (72.90%), Query Frame = 1
Query:  184 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 501
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K ++
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122          
The following BLAST results are available for this feature:
BLAST of FC871310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
H2AX_DANRE1.117e-2459.43Histone H2A.x OS=Danio rerio GN=h2afx PE=2 SV=3[more]
H2AJ_RAT1.117e-2459.81Histone H2A.J OS=Rattus norvegicus GN=H2afj PE=2 S... [more]
H2AJ_MOUSE1.117e-2459.81Histone H2A.J OS=Mus musculus GN=H2afj PE=2 SV=1[more]
H2A3_RAT1.117e-2459.81Histone H2A type 3 OS=Rattus norvegicus PE=2 SV=3[more]
H2A3_MOUSE1.117e-2459.81Histone H2A type 3 OS=Mus musculus GN=Hist3h2a PE=... [more]
H2A3_HUMAN1.117e-2459.81Histone H2A type 3 OS=Homo sapiens GN=HIST3H2A PE=... [more]
H2A1_PSAMI1.117e-2459.43Late histone H2A.1 OS=Psammechinus miliaris PE=2 S... [more]
H2A1_HUMAN1.117e-2459.81Histone H2A type 1 OS=Homo sapiens GN=HIST1H2AG PE... [more]
H2A1_BOVIN1.117e-2459.81Histone H2A type 1 OS=Bos taurus PE=1 SV=2[more]
H2A1J_HUMAN1.117e-2459.81Histone H2A type 1-J OS=Homo sapiens GN=HIST1H2AJ ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2BE07FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2BE07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871310 ID=FC871310; Name=FC871310; organism=Citrus sinensis; type=EST; length=737bp
TTTCTTTCTTCTCCTTTAATTTTCATCTCAGAAAAAATTAAAAATAATTA
AATAAATAATTAATTAATTTAAAAGAAGCTGTAGCAATTAGGCGGGAAAA
TGTCGGGCAAAGGAGCCAAAGGACTGATAACAGGCAAAACCACCATTAAC
AACAACAAGGATAAGGACAAGAAGAAACCCGTCTCCCGTTCTTCTCGTGC
TGGTCTTCAGTTCCCAGTGGGAAGGGTCCATCGTCTACTAAAGGAAAGGG
CTGCTGCTCACGGAAGGGTTGGCGCAACAGCTGCTGTTTATACAGCAGCC
ATTTTGGAATATCTAACTGCCGAAGTGTTGGAGTTGGCAGGGAATGCTAG
CAAGGATTTGAAGGTCAAACGTATTACTCCAAGGCATTTGCAGCTTGCTA
TCCGAGGAGATGAAGAACTTGACACTCTCATTAAAGGAACCATAGCCGGT
GGAGGAGTTATTCCTCATATCCACAAGTCCCTCATCAATAAATCCTCCAA
AGAGTAGTTCGTGACACCGTCATCCTCTCGGCTTTGTTTATGTGTGTACT
TTTAGCTGTGCTGAAATATCTAAATGAGAAATGATGCCAAAGATGTGTTA
ATGCTAGGAATCTGCATTCTTCAATCCTCATTTCATGCAGCGACGAATTA
TGGTGCTTGTTTTTTCCCATGTTGGTATTGAACTGTTACTGTTTAATTTT
TAAATAATTCTAAAAAAAAAAAAAAAAAAAAAAAAAA
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