DY257165

Overview
NameDY257165
Unique NameDY257165
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1323
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257165 vs. ExPASy Swiss-Prot
Match: CNOT7_CHICK (CCR4-NOT transcription complex subunit 7 OS=Gallus gallus GN=CNOT7 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.933e-42
Identity = 83/177 (46.89%), Postives = 116/177 (65.54%), Query Frame = 3
Query:  177 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLP 704
            EVWA NL+ E + I QVI +Y +++MDTEFPG+V         RP    R  +D+ Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ EEG+++  FAEL+M+SG+V  E V W++FHS YDFGYL+KILT  +LP
Sbjct:   14 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLP 175          

HSP 2 Score: 35.8094 bits (81), Expect = 9.933e-42
Identity = 15/34 (44.12%), Postives = 23/34 (67.65%), Query Frame = 2
Query:  743 VFGNTIYDVQHIMRLCQNLDSGLDRVARTLDVNR 844
            +F   IYDV+++M+ C+NL  GL  VA  L++ R
Sbjct:  187 LFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELER 220          
BLAST of DY257165 vs. ExPASy Swiss-Prot
Match: CNOT7_BOVIN (CCR4-NOT transcription complex subunit 7 OS=Bos taurus GN=CNOT7 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.933e-42
Identity = 83/177 (46.89%), Postives = 116/177 (65.54%), Query Frame = 3
Query:  177 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLP 704
            EVWA NL+ E + I QVI +Y +++MDTEFPG+V         RP    R  +D+ Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ EEG+++  FAEL+M+SG+V  E V W++FHS YDFGYL+KILT  +LP
Sbjct:   14 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLP 175          

HSP 2 Score: 35.8094 bits (81), Expect = 9.933e-42
Identity = 15/34 (44.12%), Postives = 23/34 (67.65%), Query Frame = 2
Query:  743 VFGNTIYDVQHIMRLCQNLDSGLDRVARTLDVNR 844
            +F   IYDV+++M+ C+NL  GL  VA  L++ R
Sbjct:  187 LFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELER 220          
BLAST of DY257165 vs. ExPASy Swiss-Prot
Match: CNOT7_XENLA (CCR4-NOT transcription complex subunit 7 OS=Xenopus laevis GN=cnot7 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.863e-41
Identity = 82/177 (46.33%), Postives = 115/177 (64.97%), Query Frame = 3
Query:  177 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLP 704
            EVWA NL+ + + I QVI +Y +++MDTEFPG+V         RP    R  +D+ Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ EEG+++  FAEL M+SG+V  E V W++FHS YDFGYL+KILT  +LP
Sbjct:   14 EVWACNLDDQMKRIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLP 175          

HSP 2 Score: 36.5798 bits (83), Expect = 2.863e-41
Identity = 20/51 (39.22%), Postives = 30/51 (58.82%), Query Frame = 2
Query:  692 PELAQWPRTSFLTVLPVVFGNTIYDVQHIMRLCQNLDSGLDRVARTLDVNR 844
            PE+ Q     F  +L + F   IYDV+++M+ C+NL  GL  VA  L++ R
Sbjct:  175 PEVEQ----DFFEILRLFFP-VIYDVKYLMKSCKNLKGGLQEVAEQLELER 220          
BLAST of DY257165 vs. ExPASy Swiss-Prot
Match: CAF1_SCHPO (Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe GN=caf1 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 3.128e-41
Identity = 87/185 (47.03%), Postives = 122/185 (65.95%), Query Frame = 3
Query:  174 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRP-DVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLERVF 725
            R+VW++NL+ E  LI  +I+RYP +SMDTEFPG+V RP  V  S+  Y        HY+ L++NVD+L +IQ+GL LSD  GN P           W+FNF  F++  D +AP+SIELL   GIDF++++E G++   FAEL++ SGLV  E V+W+TFHS YDF YL+K +T+  LP+  E  +
Sbjct:   23 RDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDY--------HYQTLRANVDSLKIIQIGLALSDEEGNAPV------EACTWQFNFT-FNLQDDMYAPESIELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFY 192          
BLAST of DY257165 vs. ExPASy Swiss-Prot
Match: CNOT7_XENTR (CCR4-NOT transcription complex subunit 7 OS=Xenopus tropicalis GN=cnot7 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.334e-41
Identity = 82/177 (46.33%), Postives = 115/177 (64.97%), Query Frame = 3
Query:  177 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLP 704
            EVWA NL+ + + I QVI +Y +++MDTEFPG+V         RP    R  +D+ Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ EEG+++  FAEL M+SG+V  E V W++FHS YDFGYL+KILT  +LP
Sbjct:   14 EVWACNLDDQMKRIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFVNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLP 175          

HSP 2 Score: 35.8094 bits (81), Expect = 6.334e-41
Identity = 15/34 (44.12%), Postives = 23/34 (67.65%), Query Frame = 2
Query:  743 VFGNTIYDVQHIMRLCQNLDSGLDRVARTLDVNR 844
            +F   IYDV+++M+ C+NL  GL  VA  L++ R
Sbjct:  187 LFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELKR 220          
BLAST of DY257165 vs. ExPASy Swiss-Prot
Match: CNOT7_DANRE (CCR4-NOT transcription complex subunit 7 OS=Danio rerio GN=cnot7 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.075e-40
Identity = 82/177 (46.33%), Postives = 115/177 (64.97%), Query Frame = 3
Query:  177 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLP 704
            EVWA NLE E + I QV  ++ +I+MDTEFPG+V         RP    R  +D+ Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ EEG++++ FAEL+M+SG+V  E V W++FHS YDFGYL+KIL+   LP
Sbjct:   14 EVWACNLEEEMKRIRQVTRKFNYIAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETMYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILSNSKLP 175          

HSP 2 Score: 35.4242 bits (80), Expect = 1.075e-40
Identity = 15/34 (44.12%), Postives = 23/34 (67.65%), Query Frame = 2
Query:  743 VFGNTIYDVQHIMRLCQNLDSGLDRVARTLDVNR 844
            +F   IYDV+++M+ C+NL  GL  VA  L++ R
Sbjct:  187 LFFPIIYDVKYLMKSCKNLKGGLQEVAEQLELER 220          
BLAST of DY257165 vs. ExPASy Swiss-Prot
Match: POP2_YEAST (Poly(A) ribonuclease POP2 OS=Saccharomyces cerevisiae GN=POP2 PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 5.168e-36
Identity = 79/181 (43.65%), Postives = 119/181 (65.75%), Query Frame = 3
Query:  174 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLE 716
            R+VW SNL SEF +I Q++ +Y  +S+ TEF G + RP         FR  K   HY+ +++NVD LN IQ+GL+LSD++GN PD     N    W+FNF +FD   +  + +S+ELLR  GI+FE++   G+D   F++L+M SGL+ ++SV+W+T+H+AYD G+L+ IL   S+P+  E
Sbjct:  161 RDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGT------FRS-KVDYHYQTMRANVDFLNPIQLGLSLSDANGNKPD-----NGPSTWQFNF-EFDPKKEIMSTESLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNKE 328          
BLAST of DY257165 vs. ExPASy Swiss-Prot
Match: CNOT7_CAEEL (CCR4-NOT transcription complex subunit 7 OS=Caenorhabditis elegans GN=ccf-1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 7.991e-29
Identity = 89/274 (32.48%), Postives = 134/274 (48.91%), Query Frame = 3
Query:  180 VWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLERVF*RSSRWFSVTPF----MTSNTLCGSVRTWTVGWTEWLGPWM*TGRSGSAPWPGSETLSTWPALTKFWDGFSPPNEPEKTCRGTYWNKRAPYL 989
            V+ SN+E EF  I   ++ YP+++MDTEFPG+V  P         FR ++  ++ +V   NV+ L LIQVG  + +  G LP  G       +W+FNF +F  A D  + +S+E+LR  GIDF   +  G+ +  F EL+ +SGL+ +  ++W+TF S YDFGYL+K +T   LP   E  F    +    T F    +     C S +    G  + +   +   R G     GS+ L T     K           +K   G  WN+ AP +
Sbjct:   26 VYMSNVEEEFARIRGFVEDYPYVAMDTEFPGVVATP------LGTFRSKEDFNYQQVF-CNVNMLKLIQVGFAMVNDKGELPPTGD------VWQFNF-NFSFAEDMFSHESVEMLRQAGIDFTLLQNNGIPTAVFGELLTTSGLITDPRITWLTFSSGYDFGYLLKSITLGDLPKE-ESTFFMCHKTLFPTSFDIKILLRTPNCASAK--LKGGLQEVADQLDVKRQGVRHQAGSDALLTAATFFKI----------KKQFFGDNWNQIAPLI 272          
BLAST of DY257165 vs. ExPASy Swiss-Prot
Match: CAF1A_ARATH (Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana GN=CAF1-1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.118e-22
Identity = 61/178 (34.27%), Postives = 94/178 (52.81%), Query Frame = 3
Query:  174 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAEL-MMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLP 704
            R VW SN++ E   +++ + R+P I+ DTE+PG+++R   D S+          + Y+ +K NV+   LIQ G TL ++ G +     GG    +WE NF +F   +D     SIE LR  G+D ++ R+EGVD   +     + +     + V +VTF  AYDF Y + IL    LP
Sbjct:   10 RRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTYFDSSS---------DECYRAMKGNVENTKLIQCGFTLFNAKGEI-----GG----VWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIRDEGVDMFGYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILNHGKLP 169          
BLAST of DY257165 vs. ExPASy Swiss-Prot
Match: CAF1E_ARATH (Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana GN=CAF1-5 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.902e-19
Identity = 61/179 (34.08%), Postives = 84/179 (46.93%), Query Frame = 3
Query:  177 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNE---SVSWVTFHSAYDFGYLVKILTRRSLP 704
            EVW  N ++E   I   +     I++DTEFPG +    +D S             Y+ +K NVD  +LIQ+GLTL          G G      WE N  DF+ +       SI  L+  G+D ++ REEG+      E  M    + NE    + WVTF  +YD  YL+K LTR+ LP
Sbjct:    4 EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKETPMDAS---------DEIRYRDMKFNVDNTHLIQLGLTL---------FGKGITK--TWEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIREEGIG---IEEFFMEFSQILNEKHGKMRWVTFQGSYDKAYLLKGLTRKPLP 159          

HSP 2 Score: 28.8758 bits (63), Expect = 2.902e-19
Identity = 18/49 (36.73%), Postives = 25/49 (51.02%), Query Frame = 2
Query:  710 PRTS--FLTVLPVVFGNTIYDVQHIMRLCQNLDS--GLDRVARTLDVNR 844
            P TS  F   +  + G  +YDV+ +  LC  L S  GL R+A  L + R
Sbjct:  159 PETSKEFDETVQQLLGRFVYDVKKMAGLCSGLSSRFGLQRIADVLQMRR 207          
The following BLAST results are available for this feature:
BLAST of DY257165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CNOT7_CHICK9.933e-4246.89CCR4-NOT transcription complex subunit 7 OS=Gallus... [more]
CNOT7_BOVIN9.933e-4246.89CCR4-NOT transcription complex subunit 7 OS=Bos ta... [more]
CNOT7_XENLA2.863e-4146.33CCR4-NOT transcription complex subunit 7 OS=Xenopu... [more]
CAF1_SCHPO3.128e-4147.03Poly(A) ribonuclease pop2 OS=Schizosaccharomyces p... [more]
CNOT7_XENTR6.334e-4146.33CCR4-NOT transcription complex subunit 7 OS=Xenopu... [more]
CNOT7_DANRE1.075e-4046.33CCR4-NOT transcription complex subunit 7 OS=Danio ... [more]
POP2_YEAST5.168e-3643.65Poly(A) ribonuclease POP2 OS=Saccharomyces cerevis... [more]
CNOT7_CAEEL7.991e-2932.48CCR4-NOT transcription complex subunit 7 OS=Caenor... [more]
CAF1A_ARATH1.118e-2234.27Probable CCR4-associated factor 1 homolog 1 OS=Ara... [more]
CAF1E_ARATH2.902e-1934.08Probable CCR4-associated factor 1 homolog 5 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1BC04FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257165 ID=DY257165; Name=DY257165; organism=Citrus sinensis; type=EST; length=1323bp
GTACTCTCTTTAATTTTGGCCTACTATCTTCATTTGATACTTTCAAATCT
CACTTGCGAAGCGTCGAGCTGCAAGCTATTAGCTGACGATCATCACTCAT
CATGGGAGCTGGAGATTTTTCTACGGATTTAGATTCAAGCTCAAATTCCA
GCTCATCGAATTCGATTATAATACGCGAAGTCTGGGCGTCTAATTTGGAA
TCCGAATTCGAACTCATCAGCCAAGTCATCGATCGGTACCCTTTTATTTC
CATGGACACCGAATTCCCCGGTCTTGTCTACCGACCCGATGTGGACCCCT
CCACCAGGCCTTACTTCCGTCAACGCAAGCCGTCCGATCACTACAAGGTT
TTGAAATCCAACGTCGACGCCTTGAACTTGATCCAGGTGGGCCTCACTCT
CTCTGACTCCTCCGGTAACTTGCCGGATTTGGGCTCCGGGGGCAACAATA
AATTCATCTGGGAGTTCAACTTCCGGGACTTCGATGTCGCGACTGACGCC
CACGCGCCGGATTCGATAGAGCTTCTGAGACTGCAGGGGATTGACTTTGA
GCGCAACAGGGAGGAAGGCGTTGACTCGGTTCGGTTCGCCGAGTTGATGA
TGTCGTCGGGACTCGTCTGTAACGAGTCGGTGAGTTGGGTCACGTTCCAC
AGCGCGTACGATTTCGGGTACCTGGTTAAGATCCTCACGCGCCGGAGCTT
GCCCAGTGGCCTAGAACGAGTTTTTTGACGGTCCTCCCGGTGGTTTTCGG
TAACACCATTTATGACGTCCAACACATTATGCGGCTCTGTCAGAACTTGG
ACAGTGGGCTGGACCGAGTGGCTCGGACCTTGGATGTGAACCGGGCGGTC
CGGAAGTGCCCCCTGGCCCGGTTCGGAAACCCTTTCGACCTGGCCTGCCC
TTACAAAATTTTGGGATGGGTTTTCCCCCCCCAACGAACCGGAAAAAACG
TGCCGCGGAACCTATTGGAACAAAAGGGCCCCCTATTTAATTCTTTCCAC
AATATATTAAATTTTGCCTTTTTCTCACAAAAAAAGAACAAAAAAACAAA
AAAAAAAAACCTTCCCTCTCTTGACTACATGCGTGACATTTTTGGAAATG
CCATTTTTTTAAGAATTTGCAGCTCCAGAAAAGGGGACTCCAATATCCGC
TGAAATATACATCCTACCTTTTTCTCGCCCCTATCCCCGTCATACACCCA
CCGCCTAGGGTGCCTCCTCGTCACTTTCCCTCCTCCTTCATTAGCCCTGG
CGCTCGCCAGTGCGTCCGCNCCACTCTGTCTCCCCAGCTGCTACCACCCG
ATTCCACGTCTCCTCTACNTTCA
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