DY257165

Overview
NameDY257165
Unique NameDY257165
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1323
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257165 vs. ExPASy Swiss-Prot
Match: CAF1H_ARATH (Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana GN=CAF1-8 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.849e-18
Identity = 62/169 (36.69%), Postives = 82/169 (48.52%), Query Frame = 3
Query:  213 LISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLER 719
            LI   +  Y FI++DTEFP  +         R   +     + Y  +  +VD   LIQ+GLTL D +G +     GG     WE NF DF V  DA    SIE LR  G+D  + REEG+    F   M         +++WVTFH +YD  YL+K  T  +LP   ER
Sbjct:    3 LIEDCLRSYRFIAIDTEFPSTL---------RETTQHATDEERYMDMSFSVDRAKLIQLGLTLFDINGRI-----GGT----WEINFSDFGV-DDARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWMLKKTRRNITWVTFHGSYDIAYLLKGFTGEALPVTSER 152          
BLAST of DY257165 vs. ExPASy Swiss-Prot
Match: CAF1C_ARATH (Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana GN=CAF1-3 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 9.484e-14
Identity = 55/171 (32.16%), Postives = 74/171 (43.27%), Query Frame = 3
Query:  177 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILT 689
            EVW  N E E   I   +     I++DTEFPG +    +D S             Y+ +K NVD  +LIQ+G TL D  G              WE N  DFD         SI  L+  G++ ++ REEG+    F           +  ++WV F  +YD  YLVK LT
Sbjct:    8 EVWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKETPMDAS---------EEIRYRDMKFNVDNTHLIQLGFTLFDRRGFAK----------TWEINLSDFDEHKCFKNDKSIAFLKSNGLNLDKIREEGIGIDEFFRDFSQILTEKDGKITWVNFQGSYDNAYLVKGLT 159          
BLAST of DY257165 vs. ExPASy Swiss-Prot
Match: CAF1D_ARATH (Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana GN=CAF1-4 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.604e-13
Identity = 53/171 (30.99%), Postives = 75/171 (43.86%), Query Frame = 3
Query:  177 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILT 689
            EVW  N E E + I   +  +  I++DTEFPG +    +D S             Y+ +K NVD  +LIQ+G TL D  G              WE N  DF+         SI  L+  G++ ++  EEG+    F           +  ++WV F  +YD  YLVK LT
Sbjct:    3 EVWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKETPMDAS---------EEIRYRDMKFNVDNTHLIQLGFTLFDRRGITK----------TWEINLSDFNEHKCFKNDKSIAFLKSNGLNLDKIGEEGIGIEEFFRDFSQILKEKDGKITWVNFQGSYDNAYLVKGLT 154          
The following BLAST results are available for this feature:
BLAST of DY257165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CAF1H_ARATH2.849e-1836.69Putative CCR4-associated factor 1 homolog 8 OS=Ara... [more]
CAF1C_ARATH9.484e-1432.16Putative CCR4-associated factor 1 homolog 3 OS=Ara... [more]
CAF1D_ARATH3.604e-1330.99Putative CCR4-associated factor 1 homolog 4 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1BC04FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257165 ID=DY257165; Name=DY257165; organism=Citrus sinensis; type=EST; length=1323bp
GTACTCTCTTTAATTTTGGCCTACTATCTTCATTTGATACTTTCAAATCT
CACTTGCGAAGCGTCGAGCTGCAAGCTATTAGCTGACGATCATCACTCAT
CATGGGAGCTGGAGATTTTTCTACGGATTTAGATTCAAGCTCAAATTCCA
GCTCATCGAATTCGATTATAATACGCGAAGTCTGGGCGTCTAATTTGGAA
TCCGAATTCGAACTCATCAGCCAAGTCATCGATCGGTACCCTTTTATTTC
CATGGACACCGAATTCCCCGGTCTTGTCTACCGACCCGATGTGGACCCCT
CCACCAGGCCTTACTTCCGTCAACGCAAGCCGTCCGATCACTACAAGGTT
TTGAAATCCAACGTCGACGCCTTGAACTTGATCCAGGTGGGCCTCACTCT
CTCTGACTCCTCCGGTAACTTGCCGGATTTGGGCTCCGGGGGCAACAATA
AATTCATCTGGGAGTTCAACTTCCGGGACTTCGATGTCGCGACTGACGCC
CACGCGCCGGATTCGATAGAGCTTCTGAGACTGCAGGGGATTGACTTTGA
GCGCAACAGGGAGGAAGGCGTTGACTCGGTTCGGTTCGCCGAGTTGATGA
TGTCGTCGGGACTCGTCTGTAACGAGTCGGTGAGTTGGGTCACGTTCCAC
AGCGCGTACGATTTCGGGTACCTGGTTAAGATCCTCACGCGCCGGAGCTT
GCCCAGTGGCCTAGAACGAGTTTTTTGACGGTCCTCCCGGTGGTTTTCGG
TAACACCATTTATGACGTCCAACACATTATGCGGCTCTGTCAGAACTTGG
ACAGTGGGCTGGACCGAGTGGCTCGGACCTTGGATGTGAACCGGGCGGTC
CGGAAGTGCCCCCTGGCCCGGTTCGGAAACCCTTTCGACCTGGCCTGCCC
TTACAAAATTTTGGGATGGGTTTTCCCCCCCCAACGAACCGGAAAAAACG
TGCCGCGGAACCTATTGGAACAAAAGGGCCCCCTATTTAATTCTTTCCAC
AATATATTAAATTTTGCCTTTTTCTCACAAAAAAAGAACAAAAAAACAAA
AAAAAAAAACCTTCCCTCTCTTGACTACATGCGTGACATTTTTGGAAATG
CCATTTTTTTAAGAATTTGCAGCTCCAGAAAAGGGGACTCCAATATCCGC
TGAAATATACATCCTACCTTTTTCTCGCCCCTATCCCCGTCATACACCCA
CCGCCTAGGGTGCCTCCTCGTCACTTTCCCTCCTCCTTCATTAGCCCTGG
CGCTCGCCAGTGCGTCCGCNCCACTCTGTCTCCCCAGCTGCTACCACCCG
ATTCCACGTCTCCTCTACNTTCA
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