DY257118

Overview
NameDY257118
Unique NameDY257118
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1244
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257118 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.258e-12
Identity = 44/122 (36.07%), Postives = 70/122 (57.38%), Query Frame = 2
Query:  389 DANAVIEKLNGTEFGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFSSKEDAEAAISSLNNSLLEGQRIRVN 754
            DA A +  +NG +  G+E+KVN    P +Q      + + SN     + V+VG+L+  +T+E +K  F+  G++  A+V +   T KS G+GFV+F +K DAE AI  +    L G++IR N
Sbjct:   60 DAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTN 171          
BLAST of DY257118 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.803e-12
Identity = 47/141 (33.33%), Postives = 75/141 (53.19%), Query Frame = 2
Query:  380 TVEDANAVIEKLNGTEFGGREIKVNITEKPLAQVDLSLLQAEDSNF--------------VDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFSSKEDAEAAISSLNNSLLEGQRIRVNNA 760
            +V +  A  ++ NG E  GR ++VN    P  + D    +   S+F                S  +VYVGNL+  V    L+  FSE+G+V+ A+V     + +S GFGFVT+ S ++ + AI SL+ + L+G++IRV+ A
Sbjct:  141 SVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKRED-GFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEA 280          
BLAST of DY257118 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.781e-12
Identity = 45/127 (35.43%), Postives = 70/127 (55.12%), Query Frame = 2
Query:  380 TVEDANAVIEKLNGTEFGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFSSKEDAEAAISSLNNSLLEGQRIRVNNA 760
            +V++A   +EK N  +  GR + VN      ++ + +          +  ++VYVGNL   V +  L++ FSE G+V+ A+V     T +S GFGFVT S  ++   AIS+L+   LEG+ IRVN A
Sbjct:  200 SVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERA------PRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320          
BLAST of DY257118 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.155e-12
Identity = 45/127 (35.43%), Postives = 70/127 (55.12%), Query Frame = 2
Query:  380 TVEDANAVIEKLNGTEFGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFSSKEDAEAAISSLNNSLLEGQRIRVNNA 760
            TVE+A   +E  N  +  GR + VN   +   + +      E S      Y++YVGN+   +    L++ FSE G+V+SA+V     T +S GFGFVT +S+ +   AI++L+   L+G+ IRVN A
Sbjct:  186 TVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQS------YRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVA 306          
BLAST of DY257118 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.391e-11
Identity = 43/127 (33.86%), Postives = 71/127 (55.91%), Query Frame = 2
Query:  380 TVEDANAVIEKLNGTEFGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFSSKEDAEAAISSLNNSLLEGQRIRVNNA 760
            TVE+A+  +E  +  +  GR + VN      ++ + +            TY++YVGN+   +    L++ FSE G+V+SA+V     + +S GFGFVT SS+ +   AI++L+   L+G+ IRVN A
Sbjct:  147 TVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERA------PRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAA 267          
BLAST of DY257118 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.047e-11
Identity = 46/126 (36.51%), Postives = 68/126 (53.97%), Query Frame = 2
Query:  386 EDANAVIEKLNGTEFGGREIKVNITEKPLA-QVDLSLLQAEDSNFVDSTYK---VYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFSSKEDAEAAISSLNNSLLEGQRIRV 751
            EDAN  +E++NG E  G+ I V   +K +  Q +L     +      S Y+   +Y+ NL  T+  E L+K FS  G + SAKV    G SK  GFGFV FSS E+A  A++ +N  ++  + + V
Sbjct:  242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365          
The following BLAST results are available for this feature:
BLAST of DY257118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
TIAR_HUMAN1.258e-1236.07Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=... [more]
ROC1_ARATH2.803e-1233.33Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
ROC3_ARATH4.781e-1235.4331 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC4_NICSY8.155e-1235.4331 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC3_NICSY1.391e-1133.8628 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
PABP4_HUMAN4.047e-1136.51Polyadenylate-binding protein 4 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AD04FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257118 ID=DY257118; Name=DY257118; organism=Citrus sinensis; type=EST; length=1244bp
CCATACAATAATCGAAATACAGATGGGCGTCACAGGTGTCCAAGAGAAAA
GATACAAACTCATGGACTAAAAATTGCTTCAACGGATTCTGAAGTTCGTC
GCTTTATAACTCGATGCGACTCAACATTTGGATGGATTGAATCGCAATTC
ATTACTCAACTGTGTCATTCATTGTTACCAATGTTAATGCTAATAACCAA
AATTTTATGAAGTTGTGGGGCAAAAGCCAAGTGCTCCTCTTACTATAAAA
AAAAAAAAAAAAAAAGAAAAAAAATAAAAAAAAAGAAAAAAAACACAGAA
AAAAAAAAAAAAAATGAAGAAATTAAAGAAAAAAAAAAATGAAAAAAATC
AAACAAATTTGCCTTTGTAACAATAGAAAACTGTTGAGGATGCAAATGCA
GTGATTGAGAAACTGAACGGCACTGAATTTGGTGGACGTGAGATCAAAGT
AAACATCACAGAGAAACCTTTGGCGCAAGTTGATTTGTCCCTCCTCCAAG
CAGAGGATTCTAACTTTGTGGACAGTACGTATAAAGTTTATGTAGGAAAT
CTTGCAAAGACAGTGACCTCGGAAATGCTCAAAAAAAATTTCTCTGAGAA
GGGACAGGTTCTTAGTGCAAAGGTTTCGCGGGTTCCAGGAACATCAAAAT
CATCTGGTTTTGGGTTTGTTACCTTCTCTTCAAAAGAGGATGCAGAAGCT
GCCATCTCTTCTCTTAACAATTCTCTGCTGGAAGGGCAACGAATTCGTGT
AAACAACGCATAGTATGTGACCCGCGGCAGTTTCTCTGGGATTCTGGAGA
GTGTTCTACTTGAAGCAACCATTTGATTTCACATGGAAAAAACAGGAATT
AGTAAAAAATGGACTTCTCTTTTTTAATTTGTTAGGATGGGAAAGCTTGT
TGGTTCTTCTTCAAGGGTATTTAAAGCGTTCAACTTCCACTTATTGGAAT
TCAAGCACTATGGTTTGACAAGGAATCACTTTTTTTGGTTTTATATTTGT
TGAATAGCCCAAAAAACAAGGGCTCGGCCCCCCCCGGAAATGCCAAAAAA
TCAATACTGCAATTTTTTTCACCAACCCCCGGCGGGAAGTTTTTTTACAT
CACACAAAAAAAATATATTTTCCCCCCCGGATTTTTTTTTTATTATATTA
TGGGAGAAGAAGTTAGCAAATGGGGGTTTTGTGCGGAGAGGAAGAGGTGT
GGGGGGGAGGGAAAAAAGAAAAGAAGGTAATAAAAATTAGACAG
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