DY257116

Overview
NameDY257116
Unique NameDY257116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257116 vs. ExPASy Swiss-Prot
Match: CNG17_ARATH (Probable cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana GN=CNGC17 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.717e-21
Identity = 56/177 (31.64%), Postives = 98/177 (55.37%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFLVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDISKSNRTIQALTNVDAFMLMADDLKIVVH 532
            L+ +V++Y+ Y    T  +D +                  C +L+++V  F ++++  LDA+C+ +  +  TE T+L+REGD I EM+F+++G+L + T    ++G  +S              +L+ GDF GEEL+ WAL  + + ++  S RT++AL  V+AF L A+DLK V +
Sbjct:  432 LRNRVRRYEQYKWLATRGVDEEVLLQSLPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLCTEGTYLVREGDLISEMLFIIRGRLESSTTNGGRTGFFNS-------------IILRPGDFCGEELLSWALLPKSTLNLPSSTRTVRALVEVEAFALRAEDLKFVAN 595          
BLAST of DY257116 vs. ExPASy Swiss-Prot
Match: CNG16_ARATH (Probable cyclic nucleotide-gated ion channel 16 OS=Arabidopsis thaliana GN=CNGC16 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.954e-20
Identity = 55/177 (31.07%), Postives = 98/177 (55.37%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFLVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDISKSNRTIQALTNVDAFMLMADDLKIVVH 532
            LQ++V+++  Y    T  +D +                  C  L+++V  F ++++  LDA+C+ + P+  T+ T++IREGDP++EM+F+++G++ + T    +SG  +S               L+ GDF GEEL+ WAL    + ++  S RT++ L+ V+AF L A+DLK V +
Sbjct:  408 LQERVRRFVQYKWLTTRGVDEEAILRALPLDLRRQIQRHLCLALVRRVPFFAQMDDQLLDAICERLVPSLNTKDTYVIREGDPVNEMLFIIRGQMESSTTDGGRSGFFNS-------------ITLRPGDFCGEELLTWALVPNINHNLPLSTRTVRTLSEVEAFALRAEDLKFVAN 571          
BLAST of DY257116 vs. ExPASy Swiss-Prot
Match: CNG14_ARATH (Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.654e-19
Identity = 53/177 (29.94%), Postives = 96/177 (54.24%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFLVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDISKSNRTIQALTNVDAFMLMADDLKIVVH 532
            L+++V+++  Y    T  +D +                  C +L+++V  F ++++  LDA+C+ +  +  T+  +++REGDP+ EM+F+++GKL + T    ++G  +S               L+ GDF GEEL+ WAL  + + ++  S RT++AL  V+AF L A DLK V +
Sbjct:  432 LRERVRRFVQYKWLATRGVDEETILHSLPADLRRDIQRHLCLDLVRRVPLFAQMDDQLLDAICERLASSLSTQGNYIVREGDPVTEMLFIIRGKLESSTTNGGRTGFFNS-------------ITLRPGDFCGEELLAWALLPKSTVNLPSSTRTVRALEEVEAFALQAGDLKFVAN 595          
BLAST of DY257116 vs. ExPASy Swiss-Prot
Match: CNGC3_ARATH (Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana GN=CNGC3 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.822e-19
Identity = 59/175 (33.71%), Postives = 99/175 (56.57%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFLVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDISKSNRTIQALTNVDAFMLMADDLKIV 526
            L+++++KY+ Y  ++T  ++ +                  C  LLKKV  F+ +++  LDALC  +K   +TE ++++REG+P+++M+F+++G L + T    ++G  +S             DL+  GDF G +L+ WAL D  S     S+RT+QALT V+ F+L ADDLK V
Sbjct:  428 LRKRIRKYEQYKWQETKGVEEEALLSSLPKDLRKDIKRHLCLKLLKKVPWFQAMDDRLLDALCARLKTVLYTEKSYIVREGEPVEDMLFIMRGNLISTTTYGGRTGFFNS------------VDLVA-GDFCG-DLLTWAL-DPLSSQFPISSRTVQALTEVEGFLLSADDLKFV 587          
BLAST of DY257116 vs. ExPASy Swiss-Prot
Match: CNGC2_ARATH (Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.236e-16
Identity = 47/135 (34.81%), Postives = 76/135 (56.30%), Query Frame = 2
Query:  122 CWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFLVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDISKSNRTIQALTNVDAFMLMADDLKIV 526
            C++L+ KV  FR ++++ LD +CD  KP  F++   +IREGDP+  MIF+++G++     K IQS S          K       L+ G + G+EL+ W LR  F   +  S+ T   L N++AF L ++DL+ +
Sbjct:  522 CFDLINKVPLFRGMDDLILDNICDRAKPRVFSKDEKIIREGDPVQRMIFIMRGRV-----KRIQSLS----------KGVLATSTLEPGGYLGDELLSWCLRRPFLDRLPPSSATFVCLENIEAFSLGSEDLRYI 641          
BLAST of DY257116 vs. ExPASy Swiss-Prot
Match: CNG11_ARATH (Cyclic nucleotide-gated ion channel 11 OS=Arabidopsis thaliana GN=CNGC11 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 7.193e-15
Identity = 53/175 (30.29%), Postives = 94/175 (53.71%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFLVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDISKSNRTIQALTNVDAFMLMADDLKIV 526
            L++++++++ Y  R+T   + +                     LLKKV   + +++  LDALC  +K   +TE ++++REG+P+++M+F+++G L + T    ++G  +S             DL+  GD  G +L+ WAL    S     S+RT+QALT V+ F++ ADDLK V
Sbjct:  386 LKERIRRFEDYKWRRTKGTEEEALLRSLPKDLRLETKRYLFLKLLKKVPLLQAMDDQLLDALCARLKTVHYTEKSYIVREGEPVEDMLFIMRGNLISTTTYGGRTGFFNS------------VDLIA-GDSCG-DLLTWALYS-LSSQFPISSRTVQALTEVEGFVISADDLKFV 545          
BLAST of DY257116 vs. ExPASy Swiss-Prot
Match: CNGC4_ARATH (Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana GN=CNGC4 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.829e-11
Identity = 42/135 (31.11%), Postives = 71/135 (52.59%), Query Frame = 2
Query:  122 CWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFLVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDISKSNRTIQALTNVDAFMLMADDLKIV 526
            C +L+++V  F+ ++++ L+ +CD VK   FT+   + +EGD +  M+F+V+G L        QS     D         +   +L  G+F G+EL+ W LR  F   +  S+ T+  L   +AF L A+D+K V
Sbjct:  487 CLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETIQKEGDAVQRMLFVVRGHL--------QSSQLLRD-------GVKSCCMLGPGNFSGDELLSWCLRRPFVERLPPSSSTLVTLETTEAFGLDAEDVKYV 606          
BLAST of DY257116 vs. ExPASy Swiss-Prot
Match: CNG12_ARATH (Probable cyclic nucleotide-gated ion channel 12 OS=Arabidopsis thaliana GN=CNGC12 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.829e-11
Identity = 46/176 (26.14%), Postives = 87/176 (49.43%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEV-TLDALCDCVKPTFFTEHTHLIREGDPIDEMIFLVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDISKSNRTIQALTNVDAFMLMADDLKIV 526
            L++++++++ Y  R+T   + +                    ++LK+V     +++   L+A+CD VK  F+  ++ ++REG P++EM+ + +GKL+          ST+  H+     N      LQDGD  GE L + +        +  S RT+  LT V+ F+L+ DD+K +
Sbjct:  386 LKERIRRFEDYKWRETKGTEEEALLRSLPKDLRLETKRYLYLDMLKRVPWLNIMDDGWLLEAVCDRVKSVFYLANSFIVREGHPVEEMLIVTRGKLK----------STTGSHEMGVRNNCCD---LQDGDICGELLFNGS-------RLPTSTRTVMTLTEVEGFILLPDDIKFI 541          
The following BLAST results are available for this feature:
BLAST of DY257116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
CNG17_ARATH6.717e-2131.64Probable cyclic nucleotide-gated ion channel 17 OS... [more]
CNG16_ARATH1.954e-2031.07Probable cyclic nucleotide-gated ion channel 16 OS... [more]
CNG14_ARATH1.654e-1929.94Probable cyclic nucleotide-gated ion channel 14 OS... [more]
CNGC3_ARATH2.822e-1933.71Probable cyclic nucleotide-gated ion channel 3 OS=... [more]
CNGC2_ARATH2.236e-1634.81Cyclic nucleotide-gated ion channel 2 OS=Arabidops... [more]
CNG11_ARATH7.193e-1530.29Cyclic nucleotide-gated ion channel 11 OS=Arabidop... [more]
CNGC4_ARATH2.829e-1131.11Cyclic nucleotide-gated ion channel 4 OS=Arabidops... [more]
CNG12_ARATH2.829e-1126.14Probable cyclic nucleotide-gated ion channel 12 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AD01FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257116 ID=DY257116; Name=DY257116; organism=Citrus sinensis; type=EST; length=809bp
TCTCCAGCAAAAGGTGAAGAAATATAAGTCGTACATACGGCGAAAAACTG
ATTACATTGATGTACAAAATCTACTCAATAATCTTCCCAATGAACTCAGA
AGAGAACTAAAGCGCGAACTTTGCTGGAATCTGCTAAAGAAAGTACAAGA
GTTCAGGAAGCTAAATGAGGTAACATTGGATGCTCTATGCGATTGCGTAA
AACCAACTTTCTTCACCGAGCACACTCACTTAATTCGTGAAGGAGACCCA
ATTGACGAGATGATCTTTTTAGTGCAAGGCAAACTGCGCACCTACACCTT
TAAGGATATACAAAGTGGCTCAACAAGCTCTGATCATAAAAGATATGATG
GCAAAAACACAAGGAAAGAAGATCTTCTGCAAGATGGCGACTTCTATGGA
GAAGAACTTATTGACTGGGCTTTGAGAGACCGCTTCTCATTTGACATCTC
TAAGTCAAACAGAACCATTCAAGCACTTACAAATGTTGATGCCTTTATGC
TTATGGCTGATGACTTGAAAATTGTAGTCCATGACATGATGAATCAGTTA
TGTCTCTACGACTAAAGTCTCTACCACAAACAAGAACTCCCTGAACTCTA
CCCAGGAAATTGATGGGGACTTGCCACCTGAGGTTTATCCCCTCTTCACC
AACTAAATCCTTTTAAGAAATAAAAACTTTTAATTATCAAAACTTGGAAT
TTTCCTACTTTTCCGTAGGAAAATCCAAGTTTCCCAAGGCCCACAAAATA
ATCCTTGGAAAGGCCAAACATATCCCCAATGGTAATTGGAAAATGAATTA
ACCCCTAAC
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