DY257116
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY257116 vs. ExPASy Swiss-Prot
Match: CNG17_ARATH (Probable cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana GN=CNGC17 PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 6.717e-21 Identity = 56/177 (31.64%), Postives = 98/177 (55.37%), Query Frame = 2 Query: 2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFLVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDISKSNRTIQALTNVDAFMLMADDLKIVVH 532 L+ +V++Y+ Y T +D + C +L+++V F ++++ LDA+C+ + + TE T+L+REGD I EM+F+++G+L + T ++G +S +L+ GDF GEEL+ WAL + + ++ S RT++AL V+AF L A+DLK V + Sbjct: 432 LRNRVRRYEQYKWLATRGVDEEVLLQSLPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLCTEGTYLVREGDLISEMLFIIRGRLESSTTNGGRTGFFNS-------------IILRPGDFCGEELLSWALLPKSTLNLPSSTRTVRALVEVEAFALRAEDLKFVAN 595
BLAST of DY257116 vs. ExPASy Swiss-Prot
Match: CNG16_ARATH (Probable cyclic nucleotide-gated ion channel 16 OS=Arabidopsis thaliana GN=CNGC16 PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.954e-20 Identity = 55/177 (31.07%), Postives = 98/177 (55.37%), Query Frame = 2 Query: 2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFLVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDISKSNRTIQALTNVDAFMLMADDLKIVVH 532 LQ++V+++ Y T +D + C L+++V F ++++ LDA+C+ + P+ T+ T++IREGDP++EM+F+++G++ + T +SG +S L+ GDF GEEL+ WAL + ++ S RT++ L+ V+AF L A+DLK V + Sbjct: 408 LQERVRRFVQYKWLTTRGVDEEAILRALPLDLRRQIQRHLCLALVRRVPFFAQMDDQLLDAICERLVPSLNTKDTYVIREGDPVNEMLFIIRGQMESSTTDGGRSGFFNS-------------ITLRPGDFCGEELLTWALVPNINHNLPLSTRTVRTLSEVEAFALRAEDLKFVAN 571
BLAST of DY257116 vs. ExPASy Swiss-Prot
Match: CNG14_ARATH (Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2) HSP 1 Score: 96.6709 bits (239), Expect = 1.654e-19 Identity = 53/177 (29.94%), Postives = 96/177 (54.24%), Query Frame = 2 Query: 2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFLVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDISKSNRTIQALTNVDAFMLMADDLKIVVH 532 L+++V+++ Y T +D + C +L+++V F ++++ LDA+C+ + + T+ +++REGDP+ EM+F+++GKL + T ++G +S L+ GDF GEEL+ WAL + + ++ S RT++AL V+AF L A DLK V + Sbjct: 432 LRERVRRFVQYKWLATRGVDEETILHSLPADLRRDIQRHLCLDLVRRVPLFAQMDDQLLDAICERLASSLSTQGNYIVREGDPVTEMLFIIRGKLESSTTNGGRTGFFNS-------------ITLRPGDFCGEELLAWALLPKSTVNLPSSTRTVRALEEVEAFALQAGDLKFVAN 595
BLAST of DY257116 vs. ExPASy Swiss-Prot
Match: CNGC3_ARATH (Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana GN=CNGC3 PE=2 SV=2) HSP 1 Score: 95.9005 bits (237), Expect = 2.822e-19 Identity = 59/175 (33.71%), Postives = 99/175 (56.57%), Query Frame = 2 Query: 2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFLVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDISKSNRTIQALTNVDAFMLMADDLKIV 526 L+++++KY+ Y ++T ++ + C LLKKV F+ +++ LDALC +K +TE ++++REG+P+++M+F+++G L + T ++G +S DL+ GDF G +L+ WAL D S S+RT+QALT V+ F+L ADDLK V Sbjct: 428 LRKRIRKYEQYKWQETKGVEEEALLSSLPKDLRKDIKRHLCLKLLKKVPWFQAMDDRLLDALCARLKTVLYTEKSYIVREGEPVEDMLFIMRGNLISTTTYGGRTGFFNS------------VDLVA-GDFCG-DLLTWAL-DPLSSQFPISSRTVQALTEVEGFLLSADDLKFV 587
BLAST of DY257116 vs. ExPASy Swiss-Prot
Match: CNGC2_ARATH (Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 2.236e-16 Identity = 47/135 (34.81%), Postives = 76/135 (56.30%), Query Frame = 2 Query: 122 CWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFLVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDISKSNRTIQALTNVDAFMLMADDLKIV 526 C++L+ KV FR ++++ LD +CD KP F++ +IREGDP+ MIF+++G++ K IQS S K L+ G + G+EL+ W LR F + S+ T L N++AF L ++DL+ + Sbjct: 522 CFDLINKVPLFRGMDDLILDNICDRAKPRVFSKDEKIIREGDPVQRMIFIMRGRV-----KRIQSLS----------KGVLATSTLEPGGYLGDELLSWCLRRPFLDRLPPSSATFVCLENIEAFSLGSEDLRYI 641
BLAST of DY257116 vs. ExPASy Swiss-Prot
Match: CNG11_ARATH (Cyclic nucleotide-gated ion channel 11 OS=Arabidopsis thaliana GN=CNGC11 PE=2 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 7.193e-15 Identity = 53/175 (30.29%), Postives = 94/175 (53.71%), Query Frame = 2 Query: 2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFLVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDISKSNRTIQALTNVDAFMLMADDLKIV 526 L++++++++ Y R+T + + LLKKV + +++ LDALC +K +TE ++++REG+P+++M+F+++G L + T ++G +S DL+ GD G +L+ WAL S S+RT+QALT V+ F++ ADDLK V Sbjct: 386 LKERIRRFEDYKWRRTKGTEEEALLRSLPKDLRLETKRYLFLKLLKKVPLLQAMDDQLLDALCARLKTVHYTEKSYIVREGEPVEDMLFIMRGNLISTTTYGGRTGFFNS------------VDLIA-GDSCG-DLLTWALYS-LSSQFPISSRTVQALTEVEGFVISADDLKFV 545
BLAST of DY257116 vs. ExPASy Swiss-Prot
Match: CNGC4_ARATH (Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana GN=CNGC4 PE=2 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 2.829e-11 Identity = 42/135 (31.11%), Postives = 71/135 (52.59%), Query Frame = 2 Query: 122 CWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFLVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDISKSNRTIQALTNVDAFMLMADDLKIV 526 C +L+++V F+ ++++ L+ +CD VK FT+ + +EGD + M+F+V+G L QS D + +L G+F G+EL+ W LR F + S+ T+ L +AF L A+D+K V Sbjct: 487 CLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETIQKEGDAVQRMLFVVRGHL--------QSSQLLRD-------GVKSCCMLGPGNFSGDELLSWCLRRPFVERLPPSSSTLVTLETTEAFGLDAEDVKYV 606
BLAST of DY257116 vs. ExPASy Swiss-Prot
Match: CNG12_ARATH (Probable cyclic nucleotide-gated ion channel 12 OS=Arabidopsis thaliana GN=CNGC12 PE=2 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 2.829e-11 Identity = 46/176 (26.14%), Postives = 87/176 (49.43%), Query Frame = 2 Query: 2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEV-TLDALCDCVKPTFFTEHTHLIREGDPIDEMIFLVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDISKSNRTIQALTNVDAFMLMADDLKIV 526 L++++++++ Y R+T + + ++LK+V +++ L+A+CD VK F+ ++ ++REG P++EM+ + +GKL+ ST+ H+ N LQDGD GE L + + + S RT+ LT V+ F+L+ DD+K + Sbjct: 386 LKERIRRFEDYKWRETKGTEEEALLRSLPKDLRLETKRYLYLDMLKRVPWLNIMDDGWLLEAVCDRVKSVFYLANSFIVREGHPVEEMLIVTRGKLK----------STTGSHEMGVRNNCCD---LQDGDICGELLFNGS-------RLPTSTRTVMTLTEVEGFILLPDDIKFI 541 The following BLAST results are available for this feature:
BLAST of DY257116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >DY257116 ID=DY257116; Name=DY257116; organism=Citrus sinensis; type=EST; length=809bpback to top |