DY257108

Overview
NameDY257108
Unique NameDY257108
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1300
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257108 vs. ExPASy Swiss-Prot
Match: CAF1C_ARATH (Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana GN=CAF1-3 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 6.174e-26
Identity = 85/247 (34.41%), Postives = 113/247 (45.75%), Query Frame = 3
Query:  177 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILT-RRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYG--GLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKI 908
            EVW  N E E   I   +     I++DTEFPG +    +D S             Y+ +K NVD  +LIQ+G TL D  G              WE N  DFD         SI  L+  G++ ++ REEG+    F           +  ++WV F  +YD  YLVK LT  + LP   +EF   ++   G  ++DVK I   C  L    GL R+A  L + R VGK H AGSDS LT   F K+
Sbjct:    8 EVWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKETPMDAS---------EEIRYRDMKFNVDNTHLIQLGFTLFDRRGFAK----------TWEINLSDFDEHKCFKNDKSIAFLKSNGLNLDKIREEGIGIDEFFRDFSQILTEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVQQLLGKFVFDVKKIAESCSGLSSQFGLQRIADVLQMKR-VGKAHHAGSDSELTARVFTKL 234          
BLAST of DY257108 vs. ExPASy Swiss-Prot
Match: CAF1D_ARATH (Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana GN=CAF1-4 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.064e-25
Identity = 83/247 (33.60%), Postives = 113/247 (45.75%), Query Frame = 3
Query:  177 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILT-RRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYG--GLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKI 908
            EVW  N E E + I   +  +  I++DTEFPG +    +D S             Y+ +K NVD  +LIQ+G TL D  G              WE N  DF+         SI  L+  G++ ++  EEG+    F           +  ++WV F  +YD  YLVK LT  + LP   +EF   +    G  ++DVK I   C  L    GL R+A  L + R VGK H AGSDS LT   F K+
Sbjct:    3 EVWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKETPMDAS---------EEIRYRDMKFNVDNTHLIQLGFTLFDRRGITK----------TWEINLSDFNEHKCFKNDKSIAFLKSNGLNLDKIGEEGIGIEEFFRDFSQILKEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVEQLLGKFVFDVKKIAESCSGLSSRFGLQRIADVLQMKR-VGKAHHAGSDSELTARVFTKL 229          
BLAST of DY257108 vs. ExPASy Swiss-Prot
Match: CAF1H_ARATH (Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana GN=CAF1-8 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 8.915e-25
Identity = 81/234 (34.62%), Postives = 115/234 (49.15%), Query Frame = 3
Query:  213 LISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYG--GLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKI 908
            LI   +  Y FI++DTEFP  +         R   +     + Y  +  +VD   LIQ+GLTL D +G +     GG     WE NF DF V  DA    SIE LR  G+D  + REEG+    F   M         +++WVTFH +YD  YL+K  T  +LP   + F   +    G ++YD+K +   C+ L    GL+ +A    ++R VG  H AGS++ LT   F K+
Sbjct:    3 LIEDCLRSYRFIAIDTEFPSTL---------RETTQHATDEERYMDMSFSVDRAKLIQLGLTLFDINGRI-----GGT----WEINFSDFGV-DDARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWMLKKTRRNITWVTFHGSYDIAYLLKGFTGEALPVTSERFSKAVARVLG-SVYDLKVMAGRCEGLSSRLGLETLAHEFGLNR-VGTAHHAGSNNELTAMVFAKV 215          
The following BLAST results are available for this feature:
BLAST of DY257108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CAF1C_ARATH6.174e-2634.41Putative CCR4-associated factor 1 homolog 3 OS=Ara... [more]
CAF1D_ARATH3.064e-2533.60Putative CCR4-associated factor 1 homolog 4 OS=Ara... [more]
CAF1H_ARATH8.915e-2534.62Putative CCR4-associated factor 1 homolog 8 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AC04FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257108 ID=DY257108; Name=DY257108; organism=Citrus sinensis; type=EST; length=1300bp
CAACTCTCAAGCAACAGCAGTTACCAGCAACAGTAAAGACTTTCAAATCT
CACTTGCGAAGCGTCGAGCTGCAAGCTATTAGCTGACGATCATCACTCAT
CATGGGAGCTGGAGATTTTTCTACGGATTTAGATTCAAGCTCAAATTCCA
GCTCATCGAATTCGATTATAATACGCGAAGTCTGGGCGTCTAATTTGGAA
TCCGAATTCGAACTCATCAGCCAAGTCATCGATCGGTACCCTTTTATTTC
CATGGACACCGAATTCCCCGGTCTTGTCTACCGACCCGATGTGGACCCCT
CCACCAGGCCTTACTTCCGTCAACGCAAGCCGTCCGATCACTACAAGGTT
TTGAAATCCAACGTCGACGCCTTGAACTTGATCCAGGTGGGCCTCACTCT
CTCTGACTCCTCCGGTAACTTGCCGGATTTGGGCTCCGGGGGCAACAATA
AATTCATCTGGGAGTTCAACTTCCGGGACTTCGATGTCGCGACTGACGCC
CACGCGCCGGATTCGATAGAGCTTCTGAGACTGCAGGGGATTGACTTTGA
GCGCAACAGGGAGGAAGGCGTTGACTCGGTTCGGTTCGCCGAGTTGATGA
TGTCGTCGGGACTCGTCTGTAACGAGTCGGTGAGTTGGGTCACGTTCCAC
AGCGCGTACGATTTCGGGTACCTGGTTAAGATCCTCACGCGCCGGAGCTT
GCCCAGTGGCCTAGACGAGTTTTTGACGGTCCTCAGGGTGTTTTTCGGTA
ACAACATTTATGACGTCAAACACATTATGCGGTTCTGTCAGAGCTTGTAC
GGTGGGCTGGACCGAGTGGCTCGGACGTTGGATGTGAGCCGGGCGGTCGG
GAAGTGCCACCAGGCCGGTTCGGATAGCCTTCTGACCTGGCATGCCTTTC
AAAAAATTAGGGATGTGTATTTCCGTCCCGAAGGAACGGAAAAACCTGCC
GGGGTATTAATGGGACTAAAAGTGTACTAAATTTAATTTTGCCCCATAAT
TTTAATTTGATTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC
CCACTTTTTTGGAAAAAAGTGGGCTATTAAAAAAAGCATTGGTTTATAAT
TTTTTTGCCAGCGAAACGGGGCCCACATCCACACAAAAAAAAAAATAATT
ATTTTGCGCCCCCCCGCGTGAATTCCCCCTTCAAGAGGGAGTCTCTAAAA
TACGTTGGGGGCATAAGTCGGGTTTCTCCCGCGGGCGGCCCCTCCGCGGC
CCCCGCGGGTGCCCTCCAAAAAACATCTCTGGGGTGTTGTTTTTATCAGT
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