DY257106
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY257106 vs. ExPASy Swiss-Prot
Match: PSB6_RAT (Proteasome subunit beta type-6 OS=Rattus norvegicus GN=Psmb6 PE=1 SV=3) HSP 1 Score: 98.2117 bits (243), Expect = 6.618e-20 Identity = 56/175 (32.00%), Postives = 93/175 (53.14%), Query Frame = 2 Query: 5 GVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 526 GV+LGAD+R T G + ++ +K+ + +I+CC +G+AADT+AV D V+ QL H V TA +L K+ + Y+ + A +++ G D G ++++ G FA GSGS ++ Y+EG+TKDE +Q +A+ + D SG + + I + E Sbjct: 44 GVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSGGVIRLAAIQQSGVE 218
BLAST of DY257106 vs. ExPASy Swiss-Prot
Match: PSB6_MOUSE (Proteasome subunit beta type-6 OS=Mus musculus GN=Psmb6 PE=1 SV=3) HSP 1 Score: 98.2117 bits (243), Expect = 6.618e-20 Identity = 56/175 (32.00%), Postives = 93/175 (53.14%), Query Frame = 2 Query: 5 GVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 526 GV+LGAD+R T G + ++ +K+ + +I+CC +G+AADT+AV D V+ QL H V TA +L K+ + Y+ + A +++ G D G ++++ G FA GSGS ++ Y+EG+TKDE +Q +A+ + D SG + + I + E Sbjct: 44 GVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSGGVIRLAAIQESGVE 218
BLAST of DY257106 vs. ExPASy Swiss-Prot
Match: PSB6_HUMAN (Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4) HSP 1 Score: 96.6709 bits (239), Expect = 1.926e-19 Identity = 55/175 (31.43%), Postives = 92/175 (52.57%), Query Frame = 2 Query: 5 GVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 526 GV+LGAD+R T G + ++ +K+ + I+CC +G+AADT+AV D V+ QL H V TA +L K+ + Y+ + A +++ G D G ++++ G FA GSGS ++ Y+EG+TK+E +Q +A+ + D SG + + I + E Sbjct: 45 GVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVE 219
BLAST of DY257106 vs. ExPASy Swiss-Prot
Match: PSB6_YEAST (Proteasome component PRE3 OS=Saccharomyces cerevisiae GN=PRE3 PE=1 SV=2) HSP 1 Score: 93.9745 bits (232), Expect = 1.248e-18 Identity = 55/178 (30.90%), Postives = 95/178 (53.37%), Query Frame = 2 Query: 2 DGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGP-HLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYL 532 DGVILGAD+R T G + ++ +K+ + I+CC +G+AADT+A+ D+V L+L+ G S TA ++ K+ + + + A +++ G D ++TI GS LP+A GSGS + ++E ++K+E + + ++ I D SG + + V+T E L Sbjct: 29 DGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGTPS-TETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERL 205
BLAST of DY257106 vs. ExPASy Swiss-Prot
Match: PSMB_METTE (Proteasome subunit beta OS=Methanosarcina thermophila GN=psmB PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 2.129e-18 Identity = 54/174 (31.03%), Postives = 92/174 (52.87%), Query Frame = 2 Query: 2 DGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY--VQAALVLGGVDCTGPHLHTIYPHG-STDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITK 514 DG++L ++ RAT G + K +K++ + + AG+ D + + +VS + QL++ ES + +T L + + Y + L++GGVD GP ++++ G S + + GSGS A + E +Y+E +T EG+ L + AI + D SG N+DV VITK Sbjct: 19 DGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLVSVESQLYKMRRD-ESMTIKGITTLMSNFLSRNRYYPMMVQLLIGGVDKNGPGIYSLDAMGGSIEETRISATGSGSPMAYGVLEDQYRENMTVKEGLDLAIRAIHNATKRDSASGENIDVVVITK 191
BLAST of DY257106 vs. ExPASy Swiss-Prot
Match: PSB9_SALSA (Proteasome subunit beta type-9 OS=Salmo salar GN=psmb9-a PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 3.632e-18 Identity = 49/160 (30.63%), Postives = 87/160 (54.37%), Query Frame = 2 Query: 5 GVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSG 484 GV+LG+D+R + G V ++ K+ + IYC +G+AAD + + +MV+ QL +H G + +V +A TL+K + Y+ + A L++ G D G + +G PFA GSGS +++Y++ ++K++ Q VV+ + + D SG Sbjct: 29 GVVLGSDSRVSAGETVVNRVMNKLSLLHDKIYCALSGSAADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEELSAHLIVAGWDKRGGGQVYVTLNGLLSRQPFAVGGSGSAYVYGFVDAEYRKAMSKEDCQQFVVNTLSLAMSRDGSSG 188
BLAST of DY257106 vs. ExPASy Swiss-Prot
Match: PSB9_ONCMY (Proteasome subunit beta type-9 OS=Oncorhynchus mykiss GN=psmb9 PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 6.195e-18 Identity = 49/160 (30.63%), Postives = 87/160 (54.37%), Query Frame = 2 Query: 5 GVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSG 484 GV+LG+D+R + G V ++ K+ + IYC +G+AAD + + +MV+ QL +H G + +V +A TL+K + Y+ + A L++ G D G + +G PFA GSGS +++Y++ ++K++ Q VV+ + + D SG Sbjct: 29 GVVLGSDSRVSAGETVVNRVMNKLSLLHDKIYCALSGSAADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEDLSAHLIVAGWDKRGGGQVYVTLNGLLSRQPFAVGGSGSSYVYGFVDAEYRKAMSKEDCQQFVVNTLSLAMSRDGSSG 188
BLAST of DY257106 vs. ExPASy Swiss-Prot
Match: PSMB_PYRHO (Proteasome subunit beta OS=Pyrococcus horikoshii GN=psmB PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 2.354e-17 Identity = 62/178 (34.83%), Postives = 97/178 (54.49%), Query Frame = 2 Query: 2 DGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQ--AALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITK-GHKE 526 DGV+L AD RA+ G I+ +N KIH + ++ GAG D + ++ ++ +L+ +G+ V TLL ++ N Y A ++GG D P L+++ G +AT GSG A ++ +S+YK+ LT +EGI+L V AI + I D+ SG + V ITK G+KE Sbjct: 20 DGVVLAADRRASLGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYSQSGKRMSVKALATLL-ANIMNGAKYFPYLAWFLVGGYD-EKPKLYSVDMVGGITEDKYATAGSGMEFAYSILDSEYKDNLTLEEGIKLAVKAINTAIKRDVFSGDGILVVTITKEGYKE 195
BLAST of DY257106 vs. ExPASy Swiss-Prot
Match: PB6LB_SALSA (Proteasome subunit beta type-6-B like protein OS=Salmo salar GN=psmb6l-b PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 8.945e-17 Identity = 56/178 (31.46%), Postives = 90/178 (50.56%), Query Frame = 2 Query: 5 GVILGADTRAT-EGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYL 532 GVI+G+D+RA+ G V K K+ + I+CC AG+ AD +AVT Q+ H V A ++LK+ +N + +QA + G D GP ++T+ G + PF GSGS ++KYK ++K+E +Q +A+ + D SG + VIT+ E++ Sbjct: 27 GVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEELQAGFITAGWDRKKGPQVYTVALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFATNALALAMGRDNVSGGVAHLVVITEEGVEHV 204
BLAST of DY257106 vs. ExPASy Swiss-Prot
Match: PSMB_PYRFU (Proteasome subunit beta OS=Pyrococcus furiosus GN=psmB PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.526e-16 Identity = 61/182 (33.52%), Postives = 96/182 (52.75%), Query Frame = 2 Query: 2 DGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHL-----FNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITK-GHKEY 529 +GV+L ADTRA+ G I+ KN KIH + ++ GAG D + ++ ++ L++ G+E V TLL L F Y G+ ++GG D P L ++ G +A GSG A ++ +S+Y+E ++ ++GI+L V AI I D+ +G + V ITK G+KEY Sbjct: 20 EGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLKAEANLYKSTVGKEMSVKALATLLANILNGSKYFPYLGW----FLVGGYD-EKPRLFSVDMVGGITEDNYAAAGSGMEFAYSILDSEYREEMSVNDGIKLAVKAINVAIKRDVFTGDGLLVVTITKDGYKEY 196 The following BLAST results are available for this feature:
BLAST of DY257106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 52
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Sequences
The
following sequences are available for this feature:
EST sequence >DY257106 ID=DY257106; Name=DY257106; organism=Citrus sinensis; type=EST; length=890bpback to top |