DY257106

Overview
NameDY257106
Unique NameDY257106
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257106 vs. ExPASy Swiss-Prot
Match: PSB6_RAT (Proteasome subunit beta type-6 OS=Rattus norvegicus GN=Psmb6 PE=1 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 6.618e-20
Identity = 56/175 (32.00%), Postives = 93/175 (53.14%), Query Frame = 2
Query:    5 GVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 526
            GV+LGAD+R T G  + ++  +K+  +  +I+CC +G+AADT+AV D V+ QL  H         V TA +L K+  + Y+  + A +++ G D   G  ++++   G      FA  GSGS       ++ Y+EG+TKDE +Q   +A+   +  D  SG  + +  I +   E
Sbjct:   44 GVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSGGVIRLAAIQQSGVE 218          
BLAST of DY257106 vs. ExPASy Swiss-Prot
Match: PSB6_MOUSE (Proteasome subunit beta type-6 OS=Mus musculus GN=Psmb6 PE=1 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 6.618e-20
Identity = 56/175 (32.00%), Postives = 93/175 (53.14%), Query Frame = 2
Query:    5 GVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 526
            GV+LGAD+R T G  + ++  +K+  +  +I+CC +G+AADT+AV D V+ QL  H         V TA +L K+  + Y+  + A +++ G D   G  ++++   G      FA  GSGS       ++ Y+EG+TKDE +Q   +A+   +  D  SG  + +  I +   E
Sbjct:   44 GVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSGGVIRLAAIQESGVE 218          
BLAST of DY257106 vs. ExPASy Swiss-Prot
Match: PSB6_HUMAN (Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4)

HSP 1 Score: 96.6709 bits (239), Expect = 1.926e-19
Identity = 55/175 (31.43%), Postives = 92/175 (52.57%), Query Frame = 2
Query:    5 GVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 526
            GV+LGAD+R T G  + ++  +K+  +   I+CC +G+AADT+AV D V+ QL  H         V TA +L K+  + Y+  + A +++ G D   G  ++++   G      FA  GSGS       ++ Y+EG+TK+E +Q   +A+   +  D  SG  + +  I +   E
Sbjct:   45 GVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVE 219          
BLAST of DY257106 vs. ExPASy Swiss-Prot
Match: PSB6_YEAST (Proteasome component PRE3 OS=Saccharomyces cerevisiae GN=PRE3 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.248e-18
Identity = 55/178 (30.90%), Postives = 95/178 (53.37%), Query Frame = 2
Query:    2 DGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGP-HLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYL 532
            DGVILGAD+R T G  + ++  +K+  +   I+CC +G+AADT+A+ D+V   L+L+    G  S   TA ++ K+  +  +  + A +++ G D      ++TI   GS   LP+A  GSGS       +  ++E ++K+E +  +  ++   I  D  SG  + + V+T    E L
Sbjct:   29 DGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGTPS-TETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERL 205          
BLAST of DY257106 vs. ExPASy Swiss-Prot
Match: PSMB_METTE (Proteasome subunit beta OS=Methanosarcina thermophila GN=psmB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.129e-18
Identity = 54/174 (31.03%), Postives = 92/174 (52.87%), Query Frame = 2
Query:    2 DGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY--VQAALVLGGVDCTGPHLHTIYPHG-STDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITK 514
            DG++L ++ RAT G  +  K  +K++ +   +    AG+  D + +  +VS + QL++     ES  +  +T L  +  +   Y  +   L++GGVD  GP ++++   G S +    +  GSGS  A  + E +Y+E +T  EG+ L + AI +    D  SG N+DV VITK
Sbjct:   19 DGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLVSVESQLYKMRRD-ESMTIKGITTLMSNFLSRNRYYPMMVQLLIGGVDKNGPGIYSLDAMGGSIEETRISATGSGSPMAYGVLEDQYRENMTVKEGLDLAIRAIHNATKRDSASGENIDVVVITK 191          
BLAST of DY257106 vs. ExPASy Swiss-Prot
Match: PSB9_SALSA (Proteasome subunit beta type-9 OS=Salmo salar GN=psmb9-a PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.632e-18
Identity = 49/160 (30.63%), Postives = 87/160 (54.37%), Query Frame = 2
Query:    5 GVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSG 484
            GV+LG+D+R + G  V ++   K+  +   IYC  +G+AAD + + +MV+ QL +H    G + +V +A TL+K   + Y+  + A L++ G D  G     +  +G     PFA  GSGS       +++Y++ ++K++  Q VV+ +   +  D  SG
Sbjct:   29 GVVLGSDSRVSAGETVVNRVMNKLSLLHDKIYCALSGSAADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEELSAHLIVAGWDKRGGGQVYVTLNGLLSRQPFAVGGSGSAYVYGFVDAEYRKAMSKEDCQQFVVNTLSLAMSRDGSSG 188          
BLAST of DY257106 vs. ExPASy Swiss-Prot
Match: PSB9_ONCMY (Proteasome subunit beta type-9 OS=Oncorhynchus mykiss GN=psmb9 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.195e-18
Identity = 49/160 (30.63%), Postives = 87/160 (54.37%), Query Frame = 2
Query:    5 GVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSG 484
            GV+LG+D+R + G  V ++   K+  +   IYC  +G+AAD + + +MV+ QL +H    G + +V +A TL+K   + Y+  + A L++ G D  G     +  +G     PFA  GSGS       +++Y++ ++K++  Q VV+ +   +  D  SG
Sbjct:   29 GVVLGSDSRVSAGETVVNRVMNKLSLLHDKIYCALSGSAADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEDLSAHLIVAGWDKRGGGQVYVTLNGLLSRQPFAVGGSGSSYVYGFVDAEYRKAMSKEDCQQFVVNTLSLAMSRDGSSG 188          
BLAST of DY257106 vs. ExPASy Swiss-Prot
Match: PSMB_PYRHO (Proteasome subunit beta OS=Pyrococcus horikoshii GN=psmB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.354e-17
Identity = 62/178 (34.83%), Postives = 97/178 (54.49%), Query Frame = 2
Query:    2 DGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQ--AALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITK-GHKE 526
            DGV+L AD RA+ G I+  +N  KIH +  ++   GAG   D   +  ++ ++ +L+   +G+   V    TLL  ++ N   Y    A  ++GG D   P L+++   G      +AT GSG   A ++ +S+YK+ LT +EGI+L V AI + I  D+ SG  + V  ITK G+KE
Sbjct:   20 DGVVLAADRRASLGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYSQSGKRMSVKALATLL-ANIMNGAKYFPYLAWFLVGGYD-EKPKLYSVDMVGGITEDKYATAGSGMEFAYSILDSEYKDNLTLEEGIKLAVKAINTAIKRDVFSGDGILVVTITKEGYKE 195          
BLAST of DY257106 vs. ExPASy Swiss-Prot
Match: PB6LB_SALSA (Proteasome subunit beta type-6-B like protein OS=Salmo salar GN=psmb6l-b PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.945e-17
Identity = 56/178 (31.46%), Postives = 90/178 (50.56%), Query Frame = 2
Query:    5 GVILGADTRAT-EGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYL 532
            GVI+G+D+RA+  G  V  K   K+  +   I+CC AG+ AD +AVT     Q+  H         V  A ++LK+  +N +  +QA  +  G D   GP ++T+   G   + PF   GSGS       ++KYK  ++K+E +Q   +A+   +  D  SG    + VIT+   E++
Sbjct:   27 GVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEELQAGFITAGWDRKKGPQVYTVALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFATNALALAMGRDNVSGGVAHLVVITEEGVEHV 204          
BLAST of DY257106 vs. ExPASy Swiss-Prot
Match: PSMB_PYRFU (Proteasome subunit beta OS=Pyrococcus furiosus GN=psmB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.526e-16
Identity = 61/182 (33.52%), Postives = 96/182 (52.75%), Query Frame = 2
Query:    2 DGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHL-----FNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITK-GHKEY 529
            +GV+L ADTRA+ G I+  KN  KIH +  ++   GAG   D   +  ++ ++  L++   G+E  V    TLL   L     F Y G+     ++GG D   P L ++   G      +A  GSG   A ++ +S+Y+E ++ ++GI+L V AI   I  D+ +G  + V  ITK G+KEY
Sbjct:   20 EGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLKAEANLYKSTVGKEMSVKALATLLANILNGSKYFPYLGW----FLVGGYD-EKPRLFSVDMVGGITEDNYAAAGSGMEFAYSILDSEYREEMSVNDGIKLAVKAINVAIKRDVFTGDGLLVVTITKDGYKEY 196          
The following BLAST results are available for this feature:
BLAST of DY257106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
PSB6_RAT6.618e-2032.00Proteasome subunit beta type-6 OS=Rattus norvegicu... [more]
PSB6_MOUSE6.618e-2032.00Proteasome subunit beta type-6 OS=Mus musculus GN=... [more]
PSB6_HUMAN1.926e-1931.43Proteasome subunit beta type-6 OS=Homo sapiens GN=... [more]
PSB6_YEAST1.248e-1830.90Proteasome component PRE3 OS=Saccharomyces cerevis... [more]
PSMB_METTE2.129e-1831.03Proteasome subunit beta OS=Methanosarcina thermoph... [more]
PSB9_SALSA3.632e-1830.63Proteasome subunit beta type-9 OS=Salmo salar GN=p... [more]
PSB9_ONCMY6.195e-1830.63Proteasome subunit beta type-9 OS=Oncorhynchus myk... [more]
PSMB_PYRHO2.354e-1734.83Proteasome subunit beta OS=Pyrococcus horikoshii G... [more]
PB6LB_SALSA8.945e-1731.46Proteasome subunit beta type-6-B like protein OS=S... [more]
PSMB_PYRFU1.526e-1633.52Proteasome subunit beta OS=Pyrococcus furiosus GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AB10FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257106 ID=DY257106; Name=DY257106; organism=Citrus sinensis; type=EST; length=890bp
GGATGGCGTCATTCTTGGGGCAGATACCAGAGCAACTGAAGGACCCATAG
TTTGCGATAAGAATTGTGAGAAAATTCATTACATGGCTCCAAACATATAT
TGTTGTGGTGCAGGAACTGCTGCTGACACAGAGGCTGTAACTGACATGGT
CAGCTCACAGCTGCAGTTACATCGTTATCATACTGGTAGAGAGTCAAGGG
TTGTTACAGCACTGACTCTTCTCAAGAAGCACCTTTTCAACTACCAAGGT
TATGTGCAAGCTGCTTTGGTTCTTGGTGGAGTTGATTGCACTGGACCTCA
TCTTCACACAATATATCCACATGGTTCAACTGACACTTTACCATTTGCGA
CAATGGGTTCTGGTTCTCTTGCTGCCATGGCTATGTTTGAATCAAAATAC
AAAGAAGGCCTGACTAAAGATGAGGGAATACAGCTAGTTGTGGACGCCAT
TTGCTCTGGTATATTCAATGACTTGGGAAGTGGAAGCAATGTTGATGTCT
GTGTAATTACCAAGGGGCACAAAGAGTACCTGAGGAACCACCTTTTGCCA
AATCCTCGCACCTTTGTCAATGCCAAAGGCTATTCTTTCCCTAAGAAGAC
AGAGGTCCTCTTGACGAAGATCACCCCGCTGAGGGAAAGGGTGGAAGTGG
TTGAGGGAGGAGATGCAATGGAAGAGTGAAAGATCAGAAGAGCACAAGGC
TGAAATCAGAGTATAGTTTACAATTCCTGGTTTAGAAACTGGAATGATAT
TTTTTAAAATTTTACATTTTCCGGAATTGGGTTCGCACATGACTACTTGT
GGATTATGTTATTTAGCTTTGTGTTCAGTTGATGGTTGTGTTGATGGAAT
TCATTTTGGCGGTTCATTAAGAACTAGCGTTGTCTTGCAT
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