DY257106

Overview
NameDY257106
Unique NameDY257106
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4105 contig Csv1_Contig4105:242..1131. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257106 vs. ExPASy Swiss-Prot
Match: PSMA_METTH (Proteasome subunit alpha OS=Methanobacterium thermoautotrophicum GN=psmA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 50/183 (27.32%), Postives = 86/183 (46.99%), Query Frame = 2
Query:    2 DGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLL--KKHLFNYQGYVQ---AALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLR 535
            +G++L  D R T   +V  K+ EKI  +  +I    +G  AD  A+ +    + Q++R       RV +    +   K ++   G V+    AL++GGV+  G  L    P G+        +G+G  AAM  FE KY + +  ++ I+L +DA+         +  +V++ VI    K+Y R
Sbjct:   45 EGIVLVVDKRPTS-KLVEPKSIEKIFQIDEHIGAATSGLVADARAIIEKARLEAQINRITYNEPIRVESLAKKICDMKQMYTQHGGVRPFGTALIIGGVNGRGCRLFETDPSGALIEYKATAIGAGRPAAMEEFEKKYSDDMNLNQAIELALDAVYEAT-EGKTTPESVEIAVIEAADKKYRR 225          
BLAST of DY257106 vs. ExPASy Swiss-Prot
Match: PSMA_HALWD (Proteasome subunit alpha OS=Haloquadratum walsbyi (strain DSM 16790) GN=psmA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 51/185 (27.57%), Postives = 82/185 (44.32%), Query Frame = 2
Query:    2 DGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQA--------ALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYL 532
            DG++L AD R+   P++   + EKIH    ++    AG  AD   + D    Q Q++R   G     V   TL K    N Q Y Q         AL++GG++   P L+   P G+       ++G+         E  Y E L+ DEG+ L +  I     ++L + + VDV  +    +E++
Sbjct:   46 DGIVLAADKRS-RSPLMEPTSVEKIHKTDDHVGIASAGHVADARQLIDFARRQAQVNRLRYGEP---VGIETLTKNVTDNIQQYTQVGGARPFGVALLIGGIEDGSPRLYETDPSGTPYEWKAVSIGADRSDLQEHLEENYTEELSLDEGVGLALRTIAISNDDEL-TAAGVDVATVASDTEEFI 225          
The following BLAST results are available for this feature:
BLAST of DY257106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
PSMA_METTH9.579e-1127.32Proteasome subunit alpha OS=Methanobacterium therm... [more]
PSMA_HALWD9.579e-1127.57Proteasome subunit alpha OS=Haloquadratum walsbyi ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAK1AB10FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257106 ID=DY257106; Name=DY257106; organism=Citrus sinensis; type=EST; length=890bp
GGATGGCGTCATTCTTGGGGCAGATACCAGAGCAACTGAAGGACCCATAG
TTTGCGATAAGAATTGTGAGAAAATTCATTACATGGCTCCAAACATATAT
TGTTGTGGTGCAGGAACTGCTGCTGACACAGAGGCTGTAACTGACATGGT
CAGCTCACAGCTGCAGTTACATCGTTATCATACTGGTAGAGAGTCAAGGG
TTGTTACAGCACTGACTCTTCTCAAGAAGCACCTTTTCAACTACCAAGGT
TATGTGCAAGCTGCTTTGGTTCTTGGTGGAGTTGATTGCACTGGACCTCA
TCTTCACACAATATATCCACATGGTTCAACTGACACTTTACCATTTGCGA
CAATGGGTTCTGGTTCTCTTGCTGCCATGGCTATGTTTGAATCAAAATAC
AAAGAAGGCCTGACTAAAGATGAGGGAATACAGCTAGTTGTGGACGCCAT
TTGCTCTGGTATATTCAATGACTTGGGAAGTGGAAGCAATGTTGATGTCT
GTGTAATTACCAAGGGGCACAAAGAGTACCTGAGGAACCACCTTTTGCCA
AATCCTCGCACCTTTGTCAATGCCAAAGGCTATTCTTTCCCTAAGAAGAC
AGAGGTCCTCTTGACGAAGATCACCCCGCTGAGGGAAAGGGTGGAAGTGG
TTGAGGGAGGAGATGCAATGGAAGAGTGAAAGATCAGAAGAGCACAAGGC
TGAAATCAGAGTATAGTTTACAATTCCTGGTTTAGAAACTGGAATGATAT
TTTTTAAAATTTTACATTTTCCGGAATTGGGTTCGCACATGACTACTTGT
GGATTATGTTATTTAGCTTTGTGTTCAGTTGATGGTTGTGTTGATGGAAT
TCATTTTGGCGGTTCATTAAGAACTAGCGTTGTCTTGCAT
back to top