DT214601

Overview
NameDT214601
Unique NameDT214601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6531 contig Csv1_Contig6531:1..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DT214601 vs. ExPASy Swiss-Prot
Match: ODPX_HUMAN (Pyruvate dehydrogenase protein X component, mitochondrial OS=Homo sapiens GN=PDHX PE=1 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 1.397e-27
Identity = 65/152 (42.76%), Postives = 98/152 (64.47%), Query Frame = -2
Query:  415 NSSWADEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAE---KRVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENP 861
            N SW  E  +Q   ++I+VAV T+ GL  P+I+DA  KG+  IA+ V+ L++KA+D  L P++Y+GG+F+++NL G FGI +F A+INPPQ+ ILAVG      K      G  + +    ++VT+S D RV+D  +   +LK+FK  +ENP
Sbjct:  347 NVSWDGEGPKQLPFIDISVAVATDKGLLTPIIKDAAAKGIQEIADSVKALSKKARDGKLLPEEYQGGSFSISNL-GMFGIDEFTAVINPPQACILAVGRFRPVLKLTEDEEGNAKLQQRQLITVTMSSDSRVVDDELATRFLKSFKANLENP 497          
BLAST of DT214601 vs. ExPASy Swiss-Prot
Match: ODO2_RICPR (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Rickettsia prowazekii GN=sucB PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.970e-25
Identity = 65/144 (45.14%), Postives = 88/144 (61.11%), Query Frame = -2
Query:  400 FKNV-NINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 828
            +KN  +I VAV T+ GL VPV+RDADK G + + + +  LA+KA++  L   D  GGTF+++N GG +G      IINPPQSGIL +   E+R V   G  + +    M + LS DHR+IDG  G  +L   K  IENPE +LL
Sbjct:  259 YKNYYDIGVAVGTDQGLVVPVVRDADKMGFADVEQAIGDLAKKAREGKLSMSDLSGGTFSISN-GGVYGSLLSTPIINPPQSGILGLHKTEERAVVIDG--KIEIRPMMYIALSYDHRIIDGKEGVSFLVKIKNLIENPEKLLL 399          
BLAST of DT214601 vs. ExPASy Swiss-Prot
Match: ODO2_RICTY (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Rickettsia typhi GN=sucB PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.478e-25
Identity = 67/144 (46.53%), Postives = 87/144 (60.42%), Query Frame = -2
Query:  400 FKNV-NINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 828
            +KN  +I VAV TE GL VPVIRDADK   + I + +  LA+KA++  L   D  GGTF+++N GG +G      IINPPQSGIL +   E+R V   G  + +    M + LS DHR+IDG  G  +L   K  IENPE +LL
Sbjct:  256 YKNYYDIGVAVGTEQGLVVPVIRDADKMSFADIEQAIGNLAKKAREGKLSISDLSGGTFSISN-GGVYGSLLSTPIINPPQSGILGLHKTEERAVVIDG--KIEIRPMMYIALSYDHRIIDGKEGVSFLVKIKNLIENPEKLLL 396          
BLAST of DT214601 vs. ExPASy Swiss-Prot
Match: ODO2_RICFE (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Rickettsia felis GN=sucB PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.478e-25
Identity = 66/144 (45.83%), Postives = 88/144 (61.11%), Query Frame = -2
Query:  400 FKNV-NINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 828
            +KN  +I VAV TE GL VPV+RDADK G + + + +  LA+KA++  L   D  GGTF+++N GG +G      IINPPQSGIL +   E+R V   G  + +    M + LS DHR+IDG  G  +L   K  IENPE +LL
Sbjct:  259 YKNYYDIGVAVGTEQGLVVPVVRDADKMGFAEVEKAIGTLAKKAREGKLSMADLSGGTFSISN-GGVYGSLLSTPIINPPQSGILGLHKTEERAVVIDG--KIEIRPMMYIALSYDHRIIDGKEGVSFLVKIKELIENPEKLLL 399          
BLAST of DT214601 vs. ExPASy Swiss-Prot
Match: ODO2_RICBR (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Rickettsia bellii (strain RML369-C) GN=sucB PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.446e-24
Identity = 67/144 (46.53%), Postives = 88/144 (61.11%), Query Frame = -2
Query:  400 FKNV-NINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 828
            +KN  +I VAV TE GL VPV+RDADK G + I + +  LA+KA+D  L   D  GGTF+++N GG +G      IINPPQSGIL +   E+RVV   G  + +    M + LS DHR+IDG     +L   K  IE+PE +LL
Sbjct:  258 YKNYYDIGVAVGTEQGLVVPVVRDADKMGFADIEKTIGGLAKKARDGKLSMADLSGGTFSISN-GGVYGSLLSTPIINPPQSGILGLHKTEERVVAIDG--KIEIRPMMYIALSYDHRIIDGKEAVSFLVKIKELIESPEKLLL 398          
BLAST of DT214601 vs. ExPASy Swiss-Prot
Match: ACOC_BACSU (Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system OS=Bacillus subtilis GN=acoC PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.889e-24
Identity = 59/154 (38.31%), Postives = 98/154 (63.64%), Query Frame = -2
Query:  400 NSSWADEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 861
            NS + +E I    +V++ +AV  ENGL VPVIR A+K  L  +A+ + + A+KA++     ++ +G TF++TNLG  FG++ F  I+NPP++GIL +G++     P    ++   S+ + ++L+ DHR  DGA  A +LKA K Y+E P +++L
Sbjct:  248 NSFYQNERIITHPHVHLGMAVALENGLVVPVIRHAEKLSLIELAQSISENAKKAREGRAGSEELQGSTFSITNLGA-FGVEHFTPILNPPETGILGIGASYD--TPVYQGEEIVRSTILPLSLTFDHRACDGAPAAAFLKAMKTYLEEPAALIL 398          
BLAST of DT214601 vs. ExPASy Swiss-Prot
Match: ODO2_RICCN (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Rickettsia conorii GN=sucB PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.208e-24
Identity = 65/144 (45.14%), Postives = 88/144 (61.11%), Query Frame = -2
Query:  400 FKNV-NINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 828
            +KN  +I VAV TE GL VPV+RDADK G + + + +  LA++A++  L   D  GGTF+++N GG +G      IINPPQSGIL +   E+R V   G  + +    M + LS DHR+IDG  G  +L   K  IENPE +LL
Sbjct:  253 YKNYYDIGVAVGTEQGLVVPVVRDADKMGFAEVEKTIGILAKQAREGKLSMADLSGGTFSISN-GGVYGSLLSTPIINPPQSGILGLHKTEERAVVIDG--KIEIRPMMYIALSYDHRIIDGKEGVSFLVKIKQLIENPEKLLL 393          
BLAST of DT214601 vs. ExPASy Swiss-Prot
Match: ODB2_BACSU (Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex OS=Bacillus subtilis GN=bfmBB PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.224e-23
Identity = 63/148 (42.57%), Postives = 90/148 (60.81%), Query Frame = -2
Query:  418 NSSWADEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIEN 861
            NS WA + I Q K++NI++AV TE+ L+VPVI++AD+K +  IA+++  LA+K +D  L   D +GGTFTV N G  FG  Q   IIN PQ+ IL V S  KR V  +          +++ LS DHRV+DG +   +L   K  +E+
Sbjct:  271 NSMWAGDKIIQKKDINISIAVATEDSLFVPVIKNADEKTIKGIAKDITGLAKKVRDGKLTADDMQGGTFTVNNTGS-FGSVQSMGIINYPQAAILQVESIVKRPVV-MDNGMIAVRDMVNLCLSLDHRVLDGLVCGRFLGRVKQILES 416          
BLAST of DT214601 vs. ExPASy Swiss-Prot
Match: ODO2_STAS1 (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=odhB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.717e-22
Identity = 61/139 (43.88%), Postives = 80/139 (57.55%), Query Frame = -2
Query:  400 NINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 816
            +I VAV TE+GL VP +RD DKK  + I +E+  LA+KA+D  L   D   G+FT+TN GG FG      IIN  Q+ IL + S   R +  +  D  +    M + LS DHR+IDG     +LK  K  IENPE +LL
Sbjct:  286 DIGVAVSTEDGLLVPFVRDCDKKNFAEIEDEIGNLAKKARDKKLGLDDMVNGSFTITN-GGIFGSMMSTPIINGSQAAILGMHSIITRPI-AIDADTIENRPMMYIALSYDHRIIDGKEAVGFLKTIKELIENPEDLLL 422          
BLAST of DT214601 vs. ExPASy Swiss-Prot
Match: ODO2_BARVB (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Bartonella vinsonii subsp. berkhofii GN=sucB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.496e-21
Identity = 61/146 (41.78%), Postives = 88/146 (60.27%), Query Frame = -2
Query:  400 FKN-VNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKR--VVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 828
            +KN VN  +AV T+ GL VPV+RDAD+  L+ I +E+ +L + A+D  L   D +GGTFT+TN GG +G      I+N PQSGIL + + ++R  VV G    Q      M + LS DHR++DG     +L   K  +E+PE ++L
Sbjct:  269 YKNYVNAGIAVGTDKGLVVPVVRDADQMSLAEIEKEIGRLGRLARDGKLAVSDMQGGTFTITN-GGVYGSLMSTPILNAPQSGILGMHAIKERAMVVDG----QIAIRPMMYLALSYDHRIVDGQEAVTFLVRVKESLEDPERLVL 409          
The following BLAST results are available for this feature:
BLAST of DT214601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
ODPX_HUMAN1.397e-2742.76Pyruvate dehydrogenase protein X component, mitoch... [more]
ODO2_RICPR4.970e-2545.14Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_RICTY8.478e-2546.53Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_RICFE8.478e-2545.83Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_RICBR1.446e-2446.53Dihydrolipoyllysine-residue succinyltransferase co... [more]
ACOC_BACSU1.889e-2438.31Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODO2_RICCN4.208e-2445.14Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODB2_BACSU1.224e-2342.57Lipoamide acyltransferase component of branched-ch... [more]
ODO2_STAS16.717e-2243.88Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_BARVB1.496e-2141.78Dihydrolipoyllysine-residue succinyltransferase co... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06N13_f2 Parent Washington Navel Orange Red Scale-Infested Rind cDNA Library UCRCS11-2 Citrus sinensis cDNA clone CS_WEd0006c_G07_VN, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214601 ID=DT214601; Name=DT214601; organism=Citrus sinensis; type=EST; length=862bp
GTTGTTTCACACAACACTGGTAATTGGAAAATCCAAAAAATATATATAAA
TCAAATTATTACCCGCATGAAAGAGGCGATTACACTCTACTAAAATCATG
TTCATCACGTATGTAACCCAAAAATCCATTAAGGAAAGGTCGATAGCAGA
ACACCTTGTTGAACACCCTATCAAGGATGAGTATGAGTTTAAGGATTGGT
TTCATGCCTCGATCCCCTGCTTTTATTCCAAAAATTTTGCATAAAAGTGT
TTACCAATTGAAAAACAAAATCAAGATGTGCTCAGTGACACAACCATGCC
AATCTGATCCCAGGTGGAAGGGGTTGAACTGAAGCCCCCATCTAAACTGA
TACAGCTAGGAAAGAGCTTCTCAACTTAGAAAAAGAAGAGTTTGGCTTAT
AGCAACATGGACTCCGGATTCTCAATGTATCCTTTGAATGCTTTCAACCA
TTCAGCACCAATCGCACCATCTATTACGCGATGATCACAACTTAATGTTA
CCGACATGAAGGAAGAAAATTTGTACTGATCTGGACCCAAGCCAGGGACA
ACCCTTTTCTCAGCAGATCCAACTGCAAGAATGCCAGATTGAGGAGGATT
GATAATGGCACAGAATTGCTTGATGCCGAAGGGTCCTCCCAAATTGGTAA
CTGTGAATGTGCCTCCCTCATAATCTTGTGGTTTCAAGCTGTTGTCTTTG
GCTTTCTGGGCCAACTGTCTGACCTCTTCAGCAATTGTGGATAAGCCTTT
CTTGTCAGCATCCCTTATAACTGGGACATAAAGACCGTTTTCTGTCTGCA
CTGCTACATTAATATTCACATTCTTAAATTGTCGGATATATTCATCAGCC
CATGAACTATTG
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