DT214600

Overview
NameDT214600
Unique NameDT214600
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length788
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DT214600 vs. ExPASy Swiss-Prot
Match: ERG1_SCHPO (Probable squalene monooxygenase OS=Schizosaccharomyces pombe GN=SPBC713.12 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.603e-22
Identity = 63/169 (37.28%), Postives = 92/169 (54.44%), Query Frame = -3
Query:  295 GALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKP--LHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVALLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPS---PKRMWIGARLISGASGIIFPIIKAE 786
            G +L+GD+ NMRHPLTGGGMTV   D  +L   + P  + D  D   +   +  F+  RK  +  IN L+ ALYK+F+   ++  K +   C DY   GG    GP+ LL GL+  P  L+ HF+AV +YG+ + +L  P+   P R+     +   AS +I P I +E
Sbjct:  287 GMILVGDSNNMRHPLTGGGMTVCFHDAYLLSRFISPSAVPDLLDYERILNQMNKFHWKRKGYSFVINVLSIALYKLFTPK-NRYMKALESGCIDYFKRGGNCVEGPIRLLGGLDHSPSHLIGHFYAVCLYGIYQYVLSGPALLMPVRIIESLLIFLQASLVIIPYILSE 454          
BLAST of DT214600 vs. ExPASy Swiss-Prot
Match: ERG1_YEAST (Squalene monooxygenase OS=Saccharomyces cerevisiae GN=ERG1 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.759e-21
Identity = 58/130 (44.62%), Postives = 77/130 (59.23%), Query Frame = -3
Query:  397 GALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVALLSGLNPRPLSLVLHFFAVAIYGV 786
            G  ++GDA NMRHPLTGGGMTV L D+V+L   +  L DF+D   +   L  ++  RK   S IN L+ ALY +F++  D   K +++ CF Y   GG     PV  LSG+ P+PL L   FFAVA Y +
Sbjct:  329 GMCVIGDALNMRHPLTGGGMTVGLHDVVLLIKKIGDL-DFSDREKVLDELLDYHFERKSYDSVINVLSVALYSLFAADSDNL-KALQKGCFKYFQRGGDCVNKPVEFLSGVLPKPLQLTRVFFAVAFYTI 456          
BLAST of DT214600 vs. ExPASy Swiss-Prot
Match: ERG1_ASHGO (Squalene monooxygenase OS=Ashbya gossypii GN=ERG1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.258e-20
Identity = 55/130 (42.31%), Postives = 78/130 (60.00%), Query Frame = -3
Query:  397 GALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVALLSGLNPRPLSLVLHFFAVAIYGV 786
            G  ++GDA NMRHPLTGGGM V L D+V+L   +  + DF+D   +   L  F+  RK  A  INTL+ ALY +F++      K++++ CF+YL  G  +   P++ LSG+ P P  L   FF VA+Y V
Sbjct:  330 GLCVVGDALNMRHPLTGGGMAVGLMDVVLLVKTIGDM-DFSDREEVLNELLGFHYERKAHACVINTLSIALYSLFAAD-SYYLKKLQKGCFEYLGRGEDWVRQPISFLSGVLPSPYLLTKVFFTVALYSV 457          
BLAST of DT214600 vs. ExPASy Swiss-Prot
Match: ERG1_CANGA (Squalene monooxygenase OS=Candida glabrata GN=ERG1 PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.694e-19
Identity = 54/130 (41.54%), Postives = 79/130 (60.77%), Query Frame = -3
Query:  397 GALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVALLSGLNPRPLSLVLHFFAVAIYGV 786
            G  ++GDA NMRHPLTGGGMTV L+D+V+L   +  L DF+D   +   L  ++  RK   + +N L+ +LY +F++   +  K +++ CF Y   GG     PVA L+G+ P+PL L   FFAVA Y +
Sbjct:  322 GLCVIGDALNMRHPLTGGGMTVGLNDVVLLIKKIGDL-DFSDREKVLDELLDYHFERKNYDAVVNVLSISLYSLFAAD-SKNLKALQKGCFKYFQRGGDCVNLPVAFLAGVLPKPLLLTRVFFAVAFYTI 449          
The following BLAST results are available for this feature:
BLAST of DT214600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
ERG1_SCHPO2.603e-2237.28Probable squalene monooxygenase OS=Schizosaccharom... [more]
ERG1_YEAST3.759e-2144.62Squalene monooxygenase OS=Saccharomyces cerevisiae... [more]
ERG1_ASHGO9.258e-2042.31Squalene monooxygenase OS=Ashbya gossypii GN=ERG1 ... [more]
ERG1_CANGA2.694e-1941.54Squalene monooxygenase OS=Candida glabrata GN=ERG1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06L13_f2 Parent Washington Navel Orange Red Scale-Infested Rind cDNA Library UCRCS11-2 Citrus sinensis cDNA clone CS_WEd0006c_F07_VN, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214600 ID=DT214600; Name=DT214600; organism=Citrus sinensis; type=EST; length=788bp
TAAGTATCATACATACAATTATGGGATTGTTTGTATGATTTTATCCATCC
TCGAAACCACAAATAATTATATAATGTCCACGTTCTTCTGTTTTCTATCT
TTTTACCCTTTTTAACAAAGGCAGTTTGCATATAAGATGTCCTTAAGGTT
GATGGAGGTTCAGATACAAGAGGCACGTTCTTAATAGCAACAAAGCCTCA
GCTACATTGATTTTTGTTTGGTATGTCAATCCTCAACAGGAGGGGCTCTG
TAGACAGCAGGTATGGTGGCAGGGAAGAACATTTGCCTCACTCCTTCGGC
CTTAATGATGGGGAAAATGATACCTGATGCACCCGAAATTAACCTAGCTC
CAATCCACATGCGCTTAGGTGAAGGAAACGGCAGTAGCAAACGACCGACA
CCATATATTGCCACAGCAAAGAAATGAAGAACTAAACTCAAGGGGCGAGG
GTTTAGACCAGAAAGTAGAGCAACTGGTCCAGTTGAAAAGACACCTCCAA
GGCTTAAATAATCGAAACATGCTTGGCGCATTTCCTTCCTTGCTTGATCA
GGAGAAGAGGAAAACACCTTGTAAAGGGCACCTGCCAGAGTATTTATTGT
AGATGCCACTGGCTTGCGCAGGGTGTAAAAGGACTCAAGATATCGGCCAA
GAGAAGCTGCGTCGTTAAAGTCATGGAGTGGCTTAAGAAGATTCCTGAGT
ACAACAATATCAGACAACGCCACAGTCATTCCACCACCAGTTAAAGGATG
ACGCATGTTGAAAGCATCACCCATCAGAAGGGCCCCAG
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