DT214593
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DT214593 vs. ExPASy Swiss-Prot
Match: PIN3A_ORYSJ (Probable auxin efflux carrier component 3a OS=Oryza sativa subsp. japonica GN=PIN3A PE=2 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 1.478e-22 Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = -1 Query: 90 GTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSSVVIFGMLITLPITVVYYIVLGL 260 GTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILS+ VIFGMLI LPIT++YYI+LGL Sbjct: 562 GTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLLYYILLGL 618
BLAST of DT214593 vs. ExPASy Swiss-Prot
Match: PIN1_ORYSJ (Auxin efflux carrier component 1 OS=Oryza sativa subsp. japonica GN=PIN1 PE=2 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 5.617e-22 Identity = 50/57 (87.72%), Postives = 55/57 (96.49%), Query Frame = -1 Query: 90 GTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSSVVIFGMLITLPITVVYYIVLGL 260 GTLLHVAIVQAALPQGIVPFVFAKEY+VHP+ILS+ VIFGMLI LPIT+VYYI+LGL Sbjct: 539 GTLLHVAIVQAALPQGIVPFVFAKEYSVHPSILSTAVIFGMLIALPITLVYYILLGL 595
BLAST of DT214593 vs. ExPASy Swiss-Prot
Match: PIN1C_ORYSJ (Probable auxin efflux carrier component 1c OS=Oryza sativa subsp. japonica GN=PIN1C PE=2 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 1.251e-21 Identity = 50/57 (87.72%), Postives = 54/57 (94.74%), Query Frame = -1 Query: 90 GTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSSVVIFGMLITLPITVVYYIVLGL 260 GTLLHVAIVQAALPQGIVPFVFAKEY+VHP ILS+ VIFGMLI LPIT+VYYI+LGL Sbjct: 536 GTLLHVAIVQAALPQGIVPFVFAKEYSVHPDILSTAVIFGMLIALPITLVYYILLGL 592
BLAST of DT214593 vs. ExPASy Swiss-Prot
Match: PIN1B_ORYSJ (Probable auxin efflux carrier component 1b OS=Oryza sativa subsp. japonica GN=PIN1B PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 1.634e-21 Identity = 49/57 (85.96%), Postives = 53/57 (92.98%), Query Frame = -1 Query: 90 GTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSSVVIFGMLITLPITVVYYIVLGL 260 G LLH+AIVQAALPQGIVPFVFAKEYNVHP ILS+ VIFGMLI LPIT+VYYI+LGL Sbjct: 498 GVLLHIAIVQAALPQGIVPFVFAKEYNVHPNILSTAVIFGMLIALPITLVYYILLGL 554
BLAST of DT214593 vs. ExPASy Swiss-Prot
Match: PINI_ARATH (Auxin efflux carrier component 1 OS=Arabidopsis thaliana GN=PIN1 PE=1 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 3.641e-21 Identity = 48/57 (84.21%), Postives = 53/57 (92.98%), Query Frame = -1 Query: 90 GTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSSVVIFGMLITLPITVVYYIVLGL 260 G LLHVAI+QAALPQGIVPFVFAKEYNVHP ILS+ VIFGMLI LPIT++YYI+LGL Sbjct: 566 GVLLHVAIIQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPITLLYYILLGL 622
BLAST of DT214593 vs. ExPASy Swiss-Prot
Match: PIN2_ARATH (Auxin efflux carrier component 2 OS=Arabidopsis thaliana GN=PIN2 PE=1 SV=2) HSP 1 Score: 99.7525 bits (247), Expect = 4.755e-21 Identity = 46/57 (80.70%), Postives = 53/57 (92.98%), Query Frame = -1 Query: 90 GTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSSVVIFGMLITLPITVVYYIVLGL 260 G LLH+AIVQAALPQGIVPFVFAKEYNVHP ILS+ VIFGML+ LP+TV+YY++LGL Sbjct: 591 GDLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLVALPVTVLYYVLLGL 647
BLAST of DT214593 vs. ExPASy Swiss-Prot
Match: PIN7_ARATH (Auxin efflux carrier component 7 OS=Arabidopsis thaliana GN=PIN7 PE=1 SV=2) HSP 1 Score: 99.3673 bits (246), Expect = 6.211e-21 Identity = 50/57 (87.72%), Postives = 53/57 (92.98%), Query Frame = -1 Query: 90 GTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSSVVIFGMLITLPITVVYYIVLGL 260 G LL VAIVQAALPQGIVPFVFAKEYNVHPAILS+ VIFGMLI LPIT+VYYI+LGL Sbjct: 563 GDLLRVAIVQAALPQGIVPFVFAKEYNVHPAILSTGVIFGMLIALPITLVYYILLGL 619
BLAST of DT214593 vs. ExPASy Swiss-Prot
Match: PIN3_ARATH (Auxin efflux carrier component 3 OS=Arabidopsis thaliana GN=PIN3 PE=1 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 6.211e-21 Identity = 50/57 (87.72%), Postives = 53/57 (92.98%), Query Frame = -1 Query: 90 GTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSSVVIFGMLITLPITVVYYIVLGL 260 G LL VAIVQAALPQGIVPFVFAKEYNVHPAILS+ VIFGMLI LPIT+VYYI+LGL Sbjct: 584 GDLLRVAIVQAALPQGIVPFVFAKEYNVHPAILSTGVIFGMLIALPITLVYYILLGL 640
BLAST of DT214593 vs. ExPASy Swiss-Prot
Match: PIN2_ORYSJ (Probable auxin efflux carrier component 2 OS=Oryza sativa subsp. japonica GN=PIN2 PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.059e-20 Identity = 46/57 (80.70%), Postives = 52/57 (91.23%), Query Frame = -1 Query: 90 GTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSSVVIFGMLITLPITVVYYIVLGL 260 G LLHVAIVQAALPQGIVPFVFAKEYN HP ILS+ VIFGMLI LPIT++YY++LG+ Sbjct: 574 GVLLHVAIVQAALPQGIVPFVFAKEYNCHPQILSTAVIFGMLIALPITILYYVLLGI 630
BLAST of DT214593 vs. ExPASy Swiss-Prot
Match: PIN4_ARATH (Auxin efflux carrier component 4 OS=Arabidopsis thaliana GN=PIN4 PE=1 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 2.360e-20 Identity = 48/57 (84.21%), Postives = 52/57 (91.23%), Query Frame = -1 Query: 90 GTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSSVVIFGMLITLPITVVYYIVLGL 260 G LL +AIVQAALPQGIVPFVFAKEYNVHP ILS+ VIFGMLI LPIT+VYYI+LGL Sbjct: 560 GDLLRIAIVQAALPQGIVPFVFAKEYNVHPTILSTGVIFGMLIALPITLVYYILLGL 616 The following BLAST results are available for this feature:
BLAST of DT214593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
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Sequences
The
following sequences are available for this feature:
EST sequence >DT214593 ID=DT214593; Name=DT214593; organism=Citrus sinensis; type=EST; length=260bpback to top |