DT214593

Overview
NameDT214593
Unique NameDT214593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length260
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6710 contig Csv1_Contig6710:39..298. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DT214593 vs. ExPASy Swiss-Prot
Match: PIN3B_ORYSJ (Putative auxin efflux carrier component 3b OS=Oryza sativa subsp. japonica GN=PIN3B PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.171e-19
Identity = 46/57 (80.70%), Postives = 51/57 (89.47%), Query Frame = -1
Query:   90 GTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSSVVIFGMLITLPITVVYYIVLGL 260
            GTLL +AIVQAALPQGIVPFVFAKEYN+H  IL + VIFGMLI LPIT+VYYI+LGL
Sbjct:  534 GTLLRIAIVQAALPQGIVPFVFAKEYNLHATILCTFVIFGMLIALPITLVYYIILGL 590          
BLAST of DT214593 vs. ExPASy Swiss-Prot
Match: PIN6_ARATH (Probable auxin efflux carrier component 6 OS=Arabidopsis thaliana GN=PIN6 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.408e-19
Identity = 40/57 (70.18%), Postives = 54/57 (94.74%), Query Frame = -1
Query:   90 GTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSSVVIFGMLITLPITVVYYIVLGL 260
            G+ LH AIVQAALPQGIVPFVFA+EYN+HP +LS++VIFGM+++LP+T++YY++LGL
Sbjct:  514 GSRLHAAIVQAALPQGIVPFVFAREYNLHPDLLSTLVIFGMIVSLPVTILYYVLLGL 570          
BLAST of DT214593 vs. ExPASy Swiss-Prot
Match: PIN5_ARATH (Putative auxin efflux carrier component 5 OS=Arabidopsis thaliana GN=PIN5 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.067e-16
Identity = 40/56 (71.43%), Postives = 47/56 (83.93%), Query Frame = -1
Query:   90 TLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSSVVIFGMLITLPITVVYYIVLGL 257
            TL  VAI+QAALPQG+VPFVFAKEYN+HP I+S+ VIFGMLI LP T+ YY +L L
Sbjct:  312 TLFKVAILQAALPQGVVPFVFAKEYNLHPEIISTGVIFGMLIALPTTLAYYFLLDL 367          
BLAST of DT214593 vs. ExPASy Swiss-Prot
Match: PIN5_ORYSJ (Probable auxin efflux carrier component 5 OS=Oryza sativa subsp. japonica GN=PIN5 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.482e-14
Identity = 35/57 (61.40%), Postives = 47/57 (82.46%), Query Frame = -1
Query:   90 GTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSSVVIFGMLITLPITVVYYIVLGL 260
            GTLLH+A+VQAALP  +  FV+A+EY VH  I+S+ VI G+ I+LP+T+VYYI+LGL
Sbjct:  370 GTLLHIAVVQAALPLAVTSFVYAEEYKVHADIMSTGVILGIFISLPVTIVYYILLGL 426          
BLAST of DT214593 vs. ExPASy Swiss-Prot
Match: PIN4_ORYSJ (Probable auxin efflux carrier component 4 OS=Oryza sativa subsp. japonica GN=PIN4 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.527e-14
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = -1
Query:   93 GTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSSVVIFGMLITLPITVVYYIVLG 260
            G +LH+AI+QAALPQ I  FVFAKEY +H  +LS+ VIFG LI+LPI + YY VLG
Sbjct:  313 GDVLHLAIIQAALPQSIASFVFAKEYGLHADVLSTAVIFGTLISLPILIAYYAVLG 368          
BLAST of DT214593 vs. ExPASy Swiss-Prot
Match: PIN6_ORYSJ (Probable auxin efflux carrier component 6 OS=Oryza sativa subsp. japonica GN=PIN6 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.140e-13
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = -1
Query:   90 GTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSSVVIFGMLITLPITVVYYIVLGL 260
            G +L VAI+QAALPQ I  F+FAKEY +H  +LS+ VIFGML++LP+ V +YIVL L
Sbjct:  305 GDVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMLVSLPLLVGFYIVLEL 361          
BLAST of DT214593 vs. ExPASy Swiss-Prot
Match: PIN8_ARATH (Putative auxin efflux carrier component 8 OS=Arabidopsis thaliana GN=PIN8 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.766e-13
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = -1
Query:   96 GTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSSVVIFGMLITLPITVVYYIVL 260
            G +L VAI+QAALPQ I  F+FAKEY +H  +LS+ VIFGML++LP+ V YY  L
Sbjct:  293 GDVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMLVSLPVLVAYYAAL 347          
The following BLAST results are available for this feature:
BLAST of DT214593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
PIN3B_ORYSJ1.171e-1980.70Putative auxin efflux carrier component 3b OS=Oryz... [more]
PIN6_ARATH3.408e-1970.18Probable auxin efflux carrier component 6 OS=Arabi... [more]
PIN5_ARATH2.067e-1671.43Putative auxin efflux carrier component 5 OS=Arabi... [more]
PIN5_ORYSJ1.482e-1461.40Probable auxin efflux carrier component 5 OS=Oryza... [more]
PIN4_ORYSJ2.527e-1464.29Probable auxin efflux carrier component 4 OS=Oryza... [more]
PIN6_ORYSJ2.140e-1361.40Probable auxin efflux carrier component 6 OS=Oryza... [more]
PIN8_ARATH4.766e-1360.00Putative auxin efflux carrier component 8 OS=Arabi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_04I18_f2 Parent Washington Navel Orange Red Scale-Infested Rind cDNA Library UCRCS11-2 Citrus sinensis cDNA clone CS_WEd0004b_E09_VN, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214593 ID=DT214593; Name=DT214593; organism=Citrus sinensis; type=EST; length=260bp
AGCACACAAATGCTCCAAAGTGTGAAACGCCATGAAAATTCCTTGAAAAT
TCCTTGTATTCTAGCTATAATCATCGAAAATTAAATTCACAATCCGAGAA
CAATGTAGTAGACTACAGTAATTGGTAAGGTTATCAACATTCCAAAGATA
ACCACACTGCTAAGAATTGCTGGATGAACATTATACTCTTTAGCAAACAC
AAATGGAACAATTCCTTGAGGAAGTGCAGCCTGTACAATTGCGACGTGGA
GGAGGGTACC
back to top