DT214587
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DT214587 vs. ExPASy Swiss-Prot
Match: PAPD1_HUMAN (Poly(A) RNA polymerase, mitochondrial OS=Homo sapiens GN=MTPAP PE=1 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 7.039e-17 Identity = 56/224 (25.00%), Postives = 112/224 (50.00%), Query Frame = -3 Query: 219 VQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGT-LSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSV----TVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISKQEKDWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQHD 875 VQ + AR P+V+ +G CD+ NN +A+ +++LL Y +D R++ L F V+ WA++ + + G +++++ +M I FLQ+R P ILP L ++ ++ C + + ++ S+N E++ L+ FF Y+ + N I++R G +K D + I++PFE + ++ + V + ++ + +A I+Q + Sbjct: 302 VQKILNARCPLVRFSHQASGFQCDLTTNNRIALTSSELLYIYGALDSRVRALVFSVRCWARAHSLTSSIPGAWITNFSLTMMVIFFLQRRSPPILPTLDSLKTLADAEDKCVIEGNNCTFVRDLSRIK--PSQNTETLELLLKEFFEYFG-NFAFDKNSINIRQGREQNKP----------DSSPLYIQNPFETSLNISKNVSQSQLQKFVDLARESAWILQQE 512
BLAST of DT214587 vs. ExPASy Swiss-Prot
Match: TUT1_BOVIN (U6 snRNA-specific terminal uridylyltransferase 1 OS=Bos taurus GN=TUT1 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.917e-14 Identity = 57/200 (28.50%), Postives = 108/200 (54.00%), Query Frame = -3 Query: 297 VQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKT--YSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTIS-----KQEKDWTRRIGNDRHLICIEDPFEVTHDL 875 VQ + AR P+VK +G+ DI ++N LA+ N++ L +++D R++ L + ++ WA+ RG++ + L++YA L+ I+FLQ R P +LP + + + V VD +C++ +L S NKE + L+ FF+ + D +++S+R G +S R+G + ++DPF+++H++ Sbjct: 358 VQTVPSARCPVVKFCHRPSGLHGDISLSNRLALHNSRFLSLCSELDGRVRPLVYTLRCWAQGRGLSGS-GPLLNNYALTLLVIYFLQTRDPPVLPTVSQLTQKAGEQVEVDGWDCSFPRDASRLE--PSTNKEPLSSLLAQFFSCVSC-WDLRGSLLSLREGQALSVAGGLPSNLSEGLRLGP----MNLQDPFDLSHNV 549
BLAST of DT214587 vs. ExPASy Swiss-Prot
Match: TUT1_HUMAN (U6 snRNA-specific terminal uridylyltransferase 1 OS=Homo sapiens GN=TUT1 PE=1 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 8.054e-13 Identity = 57/202 (28.22%), Postives = 107/202 (52.97%), Query Frame = -3 Query: 297 VQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCL----QGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTI----SKQEKDWT-RRIGNDRHLICIEDPFEVTHDL 875 VQ + AR P+VK +G+ D+ ++N LA+ N++ L +++D R++ L + ++ WA+ RG++ + LS+YA L+ I+FLQ R P +LP + Q + V VD +C++ +L S N E + L+ FF+ + D +++S+R G + W R+G + ++DPF+++H++ Sbjct: 358 VQTVPSARRPVVKFCHRPSGLHGDVSLSNRLALHNSRFLSLCSELDGRVRPLVYTLRCWAQGRGLSGS-GPLLSNYALTLLVIYFLQTRDPPVLPTVSQLTQKAGEGEQVEVDGWDCSFPRDASRLE--PSINVEPLSSLLAQFFSCVSC-WDLRGSLLSLREGQALPVAGGLPSNLWEGLRLGP----LNLQDPFDLSHNV 551
BLAST of DT214587 vs. ExPASy Swiss-Prot
Match: TUT1_RAT (U6 snRNA-specific terminal uridylyltransferase 1 OS=Rattus norvegicus GN=Tut1 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.374e-12 Identity = 61/222 (27.48%), Postives = 112/222 (50.45%), Query Frame = -3 Query: 237 VQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCL----QGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTI----SKQEKDWT-RRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAA 875 VQ + AR P+VK +G+ DI ++N LA+ N++ L +++D R++ L + ++ WA+ G++ L++YA L+ I+FLQ R P +LP + Q + V VD +C++ +L S N E + L+ FF+ + D + +++S+R G + W R+G + ++DPF+++H++ V K L+ AA Sbjct: 359 VQTVPSARRPVVKFCHRPSGLHGDISLSNRLALYNSRFLNLCSEMDSRVRPLVYTLRCWAQHNGLSGGGP-LLNNYALTLLVIYFLQTRDPPVLPTVAQLTQRSGEGEQVEVDGWDCSFPKDASRLE--PSTNVEPLSSLLAQFFSCVSC-WDLSGSLLSLREGQALMVAGGLPSDLWEGLRLGP----MNLQDPFDLSHNVAANVTSRVAKRLQSSCGAAA 572
BLAST of DT214587 vs. ExPASy Swiss-Prot
Match: POLS_MOUSE (DNA polymerase sigma OS=Mus musculus GN=Pols PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.343e-12 Identity = 55/229 (24.02%), Postives = 99/229 (43.23%), Query Frame = -3 Query: 195 NVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGST-ISKQEKDWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQHDPNPCVKLF 878 +++ L +A VPI+KL D T + DI N V + +++Y + L L ++K + R +N + G +SSY+ +LM I FLQ ++D R E++G L+ FF + +Y I ++ G I+K+E G ++CIEDP +D+GR + +++ F+ A ++ H +P + + Sbjct: 78 SIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNYMKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQ---------------------------LHPRID-----ARRADENLGMLLVEFFELYGRNFNYLKTGIRIKEGGAYIAKEEIMKAMTSGYRPSMLCIEDPLLPGNDVGR--SSYGAMQVKQVFDYAYIVLSHAVSPLARSY 272
BLAST of DT214587 vs. ExPASy Swiss-Prot
Match: POLS_HUMAN (DNA polymerase sigma OS=Homo sapiens GN=POLS PE=1 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 2.343e-12 Identity = 55/229 (24.02%), Postives = 99/229 (43.23%), Query Frame = -3 Query: 195 NVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGST-ISKQEKDWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQHDPNPCVKLF 878 +++ L +A VPI+KL D T + DI N V + +++Y + L L ++K + R +N + G +SSY+ +LM I FLQ ++D R E++G L+ FF + +Y I ++ G I+K+E G ++CIEDP +D+GR + +++ F+ A ++ H +P + + Sbjct: 78 SIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNYMKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQ---------------------------LHPRID-----ARRADENLGMLLVEFFELYGRNFNYLKTGIRIKEGGAYIAKEEIMKAMTSGYRPSMLCIEDPLLPGNDVGR--SSYGAMQVKQVFDYAYIVLSHAVSPLARSY 272
BLAST of DT214587 vs. ExPASy Swiss-Prot
Match: TUT1_MOUSE (U6 snRNA-specific terminal uridylyltransferase 1 OS=Mus musculus GN=Tut1 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.997e-12 Identity = 56/202 (27.72%), Postives = 107/202 (52.97%), Query Frame = -3 Query: 297 VQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCL----QGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISKQE----KDWT-RRIGNDRHLICIEDPFEVTHDL 875 VQ + AR P+VK +G+ D+ ++N LA+ N++ L +++D R++ L + ++ WA+ G++ L++YA L+ I+FLQ R P +LP + Q + V VD +C++ +L S N E + L+ FF+ + D + +++S+R G + E W R+G + ++DPF+++H++ Sbjct: 361 VQTVPSARRPVVKFCHRPSGLHGDVSLSNRLALYNSRFLNLCSEMDGRVRPLVYTLRCWAQHNGLSGGGP-LLNNYALTLLVIYFLQTRDPPVLPTVAQLTQRAGEGEQVEVDGWDCSFPKDASRLE--PSTNVEPLSSLLAQFFSCVSC-LDLSGSLLSLREGRPLMVAEGLPSDLWEGLRLGP----MNLQDPFDLSHNV 554
BLAST of DT214587 vs. ExPASy Swiss-Prot
Match: PAPD5_MOUSE (PAP-associated domain-containing protein 5 OS=Mus musculus GN=Papd5 PE=2 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 9.845e-11 Identity = 55/231 (23.81%), Postives = 95/231 (41.13%), Query Frame = -3 Query: 195 NVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQ--QRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRT-GSTISKQEKDWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQHDPNPCVKLF 878 +V+ L +A VPI+KL D T + DI N V L++D+ + L L ++K + R +N + G + SY+ LM + FLQ R A +P + G L+ FF + +Y I ++ GS ++K E G ++ IEDP + +D+GR + +++ F+ A ++ H +P K + Sbjct: 222 SVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDFTKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHPREDACIP----------------------------------NTNYGVLLIEFFELYGRHFNYLKTGIRIKDGGSYVAKDEVQKNMLDGYRPSMLYIEDPLQPGNDVGR--SSYGAMQVKQAFDYAYVVLSHAVSPIAKYY 416
BLAST of DT214587 vs. ExPASy Swiss-Prot
Match: PAPD5_HUMAN (PAP-associated domain-containing protein 5 OS=Homo sapiens GN=PAPD5 PE=1 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 9.845e-11 Identity = 55/231 (23.81%), Postives = 95/231 (41.13%), Query Frame = -3 Query: 195 NVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQ--QRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRT-GSTISKQEKDWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQHDPNPCVKLF 878 +V+ L +A VPI+KL D T + DI N V L++D+ + L L ++K + R +N + G + SY+ LM + FLQ R A +P + G L+ FF + +Y I ++ GS ++K E G ++ IEDP + +D+GR + +++ F+ A ++ H +P K + Sbjct: 208 SVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDFTKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHPREDACIP----------------------------------NTNYGVLLIEFFELYGRHFNYLKTGIRIKDGGSYVAKDEVQKNMLDGYRPSMLYIEDPLQPGNDVGR--SSYGAMQVKQAFDYAYVVLSHAVSPIAKYY 402 The following BLAST results are available for this feature:
BLAST of DT214587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 29
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DT214587 ID=DT214587; Name=DT214587; organism=Citrus sinensis; type=EST; length=907bpback to top |