DT214548
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DT214548 vs. ExPASy Swiss-Prot
Match: LIS1_CHICK (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Gallus gallus GN=PAFAH1B1 PE=2 SV=3) HSP 1 Score: 67.781 bits (164), Expect = 7.460e-11 Identity = 33/149 (22.15%), Postives = 75/149 (50.34%), Query Frame = -2 Query: 306 QVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQD-SVRVWSLATGECIHDLSSSGNKFHSCIFHPSYPTLMVIGGYQSLELWNMAENKCM-TIAAHDCVISALAQSPVTGMVASASHDKSVKIW 746 +V F P ++++A+ + + ++D ET + KGH+ + + +D G+ LAS S D ++++W ECI + + S P+ ++ +++++W + C+ T H + + + ++AS S+D++V++W Sbjct: 113 RVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHTGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
BLAST of DT214548 vs. ExPASy Swiss-Prot
Match: LIS1A_XENLA (Lissencephaly-1 homolog A OS=Xenopus laevis GN=pafah1b1-A PE=2 SV=3) HSP 1 Score: 67.781 bits (164), Expect = 7.460e-11 Identity = 33/149 (22.15%), Postives = 75/149 (50.34%), Query Frame = -2 Query: 306 QVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQD-SVRVWSLATGECIHDLSSSGNKFHSCIFHPSYPTLMVIGGYQSLELWNMAENKCM-TIAAHDCVISALAQSPVTGMVASASHDKSVKIW 746 +V F P +++ A+ + + ++D ET + KGH+ + + +D +G+ LAS S D ++++W ECI + + S P+ ++ +++++W + C+ T H + + + ++AS S+D++V++W Sbjct: 113 RVIFHPVFSVMVTASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
BLAST of DT214548 vs. ExPASy Swiss-Prot
Match: NUDF_CRYNE (Nuclear distribution protein PAC1 OS=Cryptococcus neoformans GN=PAC1 PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 9.743e-11 Identity = 43/173 (24.86%), Postives = 76/173 (43.93%), Query Frame = -2 Query: 306 VRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQDSV-RVWSLATGECIHDLSSSGNKFHSCIFHP--SYPTLMVIGGY-----------------------QSLELWNMAENKCM-TIAAHDCVISALAQSPVTGMVASASHDKSVKIW 743 VRF P L++A+ + + ++ V + +F GH+ + +G +L S S D R+W +TGE +L + +F P +YP + + G ++++LW+ +C+ T+ HD I AL P + SAS DK++K+W Sbjct: 196 VRFMPDGETLVSASRDKTIRVWQVSSGYCIKTFSGHAEWVREAVPSEDGRWLVSASNDQTSRIWDFSTGETKMELRGHEHVVECAVFAPVNAYPAIRELAGLKPPAPRDTRAKSPGVYAATGSRDKTIKLWDALSGQCLRTLVGHDNWIRALVFHPSGKYLLSASDDKTIKVW 368
BLAST of DT214548 vs. ExPASy Swiss-Prot
Match: LIS1_MACFA (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Macaca fascicularis GN=PAFAH1B1 PE=2 SV=3) HSP 1 Score: 67.3958 bits (163), Expect = 9.743e-11 Identity = 33/149 (22.15%), Postives = 75/149 (50.34%), Query Frame = -2 Query: 306 QVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQD-SVRVWSLATGECIHDLSSSGNKFHSCIFHPSYPTLMVIGGYQSLELWNMAENKCM-TIAAHDCVISALAQSPVTGMVASASHDKSVKIW 746 +V F P ++++A+ + + ++D ET + KGH+ + + +D +G+ L S S D ++++W ECI + + S P+ L+ +++++W + C+ T H + + + ++AS S+D++V++W Sbjct: 113 RVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLTSCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHLVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261 The following BLAST results are available for this feature:
BLAST of DT214548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 34
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DT214548 ID=DT214548; Name=DT214548; organism=Citrus sinensis; type=EST; length=762bpback to top |