DT214548

Overview
NameDT214548
Unique NameDT214548
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8145 contig Csv1_Contig8145:1077..1837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DT214548 vs. ExPASy Swiss-Prot
Match: LIS1_CHICK (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Gallus gallus GN=PAFAH1B1 PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 7.460e-11
Identity = 33/149 (22.15%), Postives = 75/149 (50.34%), Query Frame = -2
Query:  306 QVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQD-SVRVWSLATGECIHDLSSSGNKFHSCIFHPSYPTLMVIGGYQSLELWNMAENKCM-TIAAHDCVISALAQSPVTGMVASASHDKSVKIW 746
            +V F P   ++++A+ +  + ++D ET     + KGH+  +  + +D  G+ LAS S D ++++W     ECI  +    +   S    P+   ++     +++++W +    C+ T   H   +  +  +    ++AS S+D++V++W
Sbjct:  113 RVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHTGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261          
BLAST of DT214548 vs. ExPASy Swiss-Prot
Match: LIS1A_XENLA (Lissencephaly-1 homolog A OS=Xenopus laevis GN=pafah1b1-A PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 7.460e-11
Identity = 33/149 (22.15%), Postives = 75/149 (50.34%), Query Frame = -2
Query:  306 QVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQD-SVRVWSLATGECIHDLSSSGNKFHSCIFHPSYPTLMVIGGYQSLELWNMAENKCM-TIAAHDCVISALAQSPVTGMVASASHDKSVKIW 746
            +V F P   +++ A+ +  + ++D ET     + KGH+  +  + +D +G+ LAS S D ++++W     ECI  +    +   S    P+   ++     +++++W +    C+ T   H   +  +  +    ++AS S+D++V++W
Sbjct:  113 RVIFHPVFSVMVTASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261          
BLAST of DT214548 vs. ExPASy Swiss-Prot
Match: NUDF_CRYNE (Nuclear distribution protein PAC1 OS=Cryptococcus neoformans GN=PAC1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.743e-11
Identity = 43/173 (24.86%), Postives = 76/173 (43.93%), Query Frame = -2
Query:  306 VRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQDSV-RVWSLATGECIHDLSSSGNKFHSCIFHP--SYPTLMVIGGY-----------------------QSLELWNMAENKCM-TIAAHDCVISALAQSPVTGMVASASHDKSVKIW 743
            VRF P    L++A+ +  + ++ V +     +F GH+  +       +G +L S S D   R+W  +TGE   +L    +     +F P  +YP +  + G                        ++++LW+    +C+ T+  HD  I AL   P    + SAS DK++K+W
Sbjct:  196 VRFMPDGETLVSASRDKTIRVWQVSSGYCIKTFSGHAEWVREAVPSEDGRWLVSASNDQTSRIWDFSTGETKMELRGHEHVVECAVFAPVNAYPAIRELAGLKPPAPRDTRAKSPGVYAATGSRDKTIKLWDALSGQCLRTLVGHDNWIRALVFHPSGKYLLSASDDKTIKVW 368          
BLAST of DT214548 vs. ExPASy Swiss-Prot
Match: LIS1_MACFA (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Macaca fascicularis GN=PAFAH1B1 PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 9.743e-11
Identity = 33/149 (22.15%), Postives = 75/149 (50.34%), Query Frame = -2
Query:  306 QVRFQPRLGLLLAAASENVVSIFDVETDRLTHSFKGHSTEIHSVCWDTNGEYLASVSQD-SVRVWSLATGECIHDLSSSGNKFHSCIFHPSYPTLMVIGGYQSLELWNMAENKCM-TIAAHDCVISALAQSPVTGMVASASHDKSVKIW 746
            +V F P   ++++A+ +  + ++D ET     + KGH+  +  + +D +G+ L S S D ++++W     ECI  +    +   S    P+   L+     +++++W +    C+ T   H   +  +  +    ++AS S+D++V++W
Sbjct:  113 RVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLTSCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHLVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261          
The following BLAST results are available for this feature:
BLAST of DT214548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
LIS1_CHICK7.460e-1122.15Platelet-activating factor acetylhydrolase IB subu... [more]
LIS1A_XENLA7.460e-1122.15Lissencephaly-1 homolog A OS=Xenopus laevis GN=paf... [more]
NUDF_CRYNE9.743e-1124.86Nuclear distribution protein PAC1 OS=Cryptococcus ... [more]
LIS1_MACFA9.743e-1122.15Platelet-activating factor acetylhydrolase IB subu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_46C08_b2 Ruby Orange Developing Seed cDNA Library UCRCS09-2 Citrus sinensis cDNA clone UCRCS09-46C08-F15-1-7.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214548 ID=DT214548; Name=DT214548; organism=Citrus sinensis; type=EST; length=762bp
CTAAACCATGGCGGTATTAGCTTCAAAATGTTCCGTGTATAGCTGTCCTT
GTTTTCGGGATATTTTAGAGCCAATCAATCACCCAACACCTATAGGGCTA
TCAATATCATCAACAATGAAGTAATTGAAAAAAGGGGGGAAAAAAGATCA
TCAACAATATCGTGATAAATAGATAAAGCAAAATAAAATACAAGGGCAGA
TAATCTTTTCTTGTGTTTGAATTTTTGTTGAATGATGTGCGTGAAAAGTC
AGCAGCCTTTATACTGGAGGATTTGAAGCACCAAAAAGCAAGCGACAGGT
TATTTCCAGATCTTAACAGATTTGTCATGACTCGCAGAGGCAACCATCCC
AGTTACTGGAGATTGTGCTAGGGCTGATATCACACAATCATGTGCCGCGA
TTGTCATACACTTATTCTCAGCCATATTCCATAACTCCAGTGACTGGTAG
CCTCCAATGACCATGAGGGTGGGATAGCTTGGATGAAAAATACAAGAATG
AAACTTGTTCCCACTGGAACTAAGATCGTGAATGCACTCTCCTGTGGCCA
ATGACCACACTCTGACAGAATCTTGACTGACAGATGCCAAATATTCTCCA
TTTGTGTCCCAACACACAGAGTGTATCTCAGTGGAGTGTCCCTTGAAAGA
GTGTGTCAGTCTATCTGTTTCAACATCAAAGATAGACACAACATTCTCGG
ACGCTGCCGCCAAGAGAAGTCCAAGTCTTGGCTGAAATCTTACTTGCACA
GTACCACCCTTG
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