DT214534

Overview
NameDT214534
Unique NameDT214534
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length544
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8218 contig Csv1_Contig8218:133..676. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DT214534 vs. ExPASy Swiss-Prot
Match: CYSE_ECOLI (Serine acetyltransferase OS=Escherichia coli (strain K12) GN=cysE PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.050e-20
Identity = 59/115 (51.30%), Postives = 72/115 (62.61%), Query Frame = -2
Query:  211 VVVGETAVIGHNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILXXXXXXXXXXXXXGSVVLKDVPPRTTAVGNPARLIGGKENPFMLDKIPSFTMDH----TSHIHEWSD 543
            +VVGETAVI ++VSIL +VTLGGTGK  GDRHPKI  GV++GAG  IL             GSVVL+ VPP TTA G PAR++G  ++    DK PS  MD      +H  E+ D
Sbjct:  162 IVVGETAVIENDVSILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQPVPPHTTAAGVPARIVGKPDS----DK-PSMDMDQHFNGINHTFEYGD 271          
BLAST of DT214534 vs. ExPASy Swiss-Prot
Match: CYSE_ECOL6 (Serine acetyltransferase OS=Escherichia coli O6 GN=cysE PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.050e-20
Identity = 59/115 (51.30%), Postives = 72/115 (62.61%), Query Frame = -2
Query:  211 VVVGETAVIGHNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILXXXXXXXXXXXXXGSVVLKDVPPRTTAVGNPARLIGGKENPFMLDKIPSFTMDH----TSHIHEWSD 543
            +VVGETAVI ++VSIL +VTLGGTGK  GDRHPKI  GV++GAG  IL             GSVVL+ VPP TTA G PAR++G  ++    DK PS  MD      +H  E+ D
Sbjct:  162 IVVGETAVIENDVSILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQPVPPHTTAAGVPARIVGKPDS----DK-PSMDMDQHFNGINHTFEYGD 271          
BLAST of DT214534 vs. ExPASy Swiss-Prot
Match: CYSE_ECO57 (Serine acetyltransferase OS=Escherichia coli O157:H7 GN=cysE PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.050e-20
Identity = 59/115 (51.30%), Postives = 72/115 (62.61%), Query Frame = -2
Query:  211 VVVGETAVIGHNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILXXXXXXXXXXXXXGSVVLKDVPPRTTAVGNPARLIGGKENPFMLDKIPSFTMDH----TSHIHEWSD 543
            +VVGETAVI ++VSIL +VTLGGTGK  GDRHPKI  GV++GAG  IL             GSVVL+ VPP TTA G PAR++G  ++    DK PS  MD      +H  E+ D
Sbjct:  162 IVVGETAVIENDVSILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQPVPPHTTAAGVPARIVGKPDS----DK-PSMDMDQHFNGINHTFEYGD 271          
BLAST of DT214534 vs. ExPASy Swiss-Prot
Match: SAT2_ARATH (Serine acetyltransferase 2 OS=Arabidopsis thaliana GN=SAT2 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 3.496e-20
Identity = 55/102 (53.92%), Postives = 64/102 (62.75%), Query Frame = -2
Query:  238 VVVGETAVIGHNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILXXXXXXXXXXXXXGSVVLKDVPPRTTAVGNPARLIGGKENPFMLDKIPSFTMDH 543
            VV+GETAVIG+ VSILH VTLGGTGK +GDRHPKIG G L+GA   IL             GS+VLKDVP  +   GNPA+LI       M ++ PS  M H
Sbjct:  189 VVIGETAVIGNGVSILHGVTLGGTGKETGDRHPKIGEGALLGACVTILGNISIGAGAMVAAGSLVLKDVPSHSVVAGNPAKLI-----RVMEEQDPSLAMKH 285          
BLAST of DT214534 vs. ExPASy Swiss-Prot
Match: SAT3_ORYSJ (Probable serine acetyltransferase 3 OS=Oryza sativa subsp. japonica GN=SAT3 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.125e-18
Identity = 54/111 (48.65%), Postives = 68/111 (61.26%), Query Frame = -2
Query:  211 VVVGETAVIGHNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILXXXXXXXXXXXXXGSVVLKDVPPRTTAVGNPARLIGGKENPFMLDKIPSFTMDHTSHIHEWSD 543
            VV+GETAV+G+ VSILH VTLGGTGK SGDRHPK+G+GVL+GAG  +L             G++VL+DV   TTA      +IG K  P    ++P  TM+       WSD
Sbjct:  202 VVIGETAVVGYGVSILHAVTLGGTGKESGDRHPKVGDGVLIGAGASVLGNVHIGDGAEIGAGAIVLRDVADGTTA----KPIIGKKAEP--QRELPGVTME-----QRWSD 301          
BLAST of DT214534 vs. ExPASy Swiss-Prot
Match: CYSE_HAEIN (Serine acetyltransferase OS=Haemophilus influenzae GN=cysE PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.375e-16
Identity = 45/83 (54.22%), Postives = 54/83 (65.06%), Query Frame = -2
Query:  295 VVVGETAVIGHNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILXXXXXXXXXXXXXGSVVLKDVPPRTTAVGNPARLI 543
            +VVGET+VI ++VSIL  VTLGGTGK SGDRHPK+  GV++GAG  IL              SVVL  VP   TA G PAR++
Sbjct:  158 IVVGETSVIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVLNPVPEYATAAGVPARIV 240          
BLAST of DT214534 vs. ExPASy Swiss-Prot
Match: CYSE_SYNY3 (Serine acetyltransferase OS=Synechocystis sp. (strain PCC 6803) GN=cysE PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.386e-15
Identity = 46/99 (46.46%), Postives = 57/99 (57.58%), Query Frame = -2
Query:  256 VVVGETAVIGHNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILXXXXXXXXXXXXXGSVVLKDVPPRTTAVGNPARLI---GGKENPFMLDKIP 543
            VV+GETA++G    I   VTLGGTGK SG RHP +G  V+VGAG  +L             GSVVL+DVP   T VG P R++   G + NP    K+P
Sbjct:   86 VVIGETAIVGDYSLIYQGVTLGGTGKESGKRHPTLGENVVVGAGAKVLGNIAIGDNVRIGAGSVVLRDVPADFTVVGVPGRMVHPSGERVNPLEHGKLP 184          
BLAST of DT214534 vs. ExPASy Swiss-Prot
Match: CYSE_HELPY (Serine acetyltransferase OS=Helicobacter pylori GN=cysE PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 7.544e-15
Identity = 41/83 (49.40%), Postives = 52/83 (62.65%), Query Frame = -2
Query:  295 VVVGETAVIGHNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILXXXXXXXXXXXXXGSVVLKDVPPRTTAVGNPARLI 543
            VV+GET  IG +V+I H VTLGGTGK  G RHP +GN V+VGAG  +L              +VVL D+P  +TAVG+ A+ I
Sbjct:   85 VVIGETTEIGDDVTIYHGVTLGGTGKFKGKRHPTLGNRVVVGAGAKVLGAICVGDDVKIGANAVVLSDLPTGSTAVGSKAKTI 167          
BLAST of DT214534 vs. ExPASy Swiss-Prot
Match: CYSE_HELPJ (Serine acetyltransferase OS=Helicobacter pylori J99 GN=cysE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.681e-14
Identity = 41/83 (49.40%), Postives = 51/83 (61.45%), Query Frame = -2
Query:  295 VVVGETAVIGHNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILXXXXXXXXXXXXXGSVVLKDVPPRTTAVGNPARLI 543
            VV+GET  IG +V+I H VTLGGTGK  G RHP +GN V+VGAG  +L              +VVL D+P  +TAVG  A+ I
Sbjct:   85 VVIGETTEIGDDVTIYHGVTLGGTGKFKGKRHPTLGNRVVVGAGAKVLGAICVGDDVRIGANAVVLSDLPTGSTAVGAKAKTI 167          
BLAST of DT214534 vs. ExPASy Swiss-Prot
Match: CYSE_SYNE7 (Serine acetyltransferase OS=Synechococcus elongatus (strain PCC 7942) GN=cysE PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.195e-14
Identity = 42/83 (50.60%), Postives = 50/83 (60.24%), Query Frame = -2
Query:  295 VVVGETAVIGHNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILXXXXXXXXXXXXXGSVVLKDVPPRTTAVGNPARLI 543
            VV+GETA++G    I   VTLGGTGK SG RHP + N V+VGAG  +L             GSVVL+DVP   T VG P R+I
Sbjct:   86 VVIGETAIVGDYCLIYQGVTLGGTGKQSGKRHPTLANNVVVGAGAKVLGNIQIGENVRIGAGSVVLRDVPSDCTVVGIPGRVI 168          
The following BLAST results are available for this feature:
BLAST of DT214534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
CYSE_ECOLI2.050e-2051.30Serine acetyltransferase OS=Escherichia coli (stra... [more]
CYSE_ECOL62.050e-2051.30Serine acetyltransferase OS=Escherichia coli O6 GN... [more]
CYSE_ECO572.050e-2051.30Serine acetyltransferase OS=Escherichia coli O157:... [more]
SAT2_ARATH3.496e-2053.92Serine acetyltransferase 2 OS=Arabidopsis thaliana... [more]
SAT3_ORYSJ1.125e-1848.65Probable serine acetyltransferase 3 OS=Oryza sativ... [more]
CYSE_HAEIN1.375e-1654.22Serine acetyltransferase OS=Haemophilus influenzae... [more]
CYSE_SYNY33.386e-1546.46Serine acetyltransferase OS=Synechocystis sp. (str... [more]
CYSE_HELPY7.544e-1549.40Serine acetyltransferase OS=Helicobacter pylori GN... [more]
CYSE_HELPJ1.681e-1449.40Serine acetyltransferase OS=Helicobacter pylori J9... [more]
CYSE_SYNE72.195e-1450.60Serine acetyltransferase OS=Synechococcus elongatu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_10D01_b2 Ruby Orange Developing Seed cDNA Library UCRCS09-2 Citrus sinensis cDNA clone UCRCS09-10D01-H1-1-4.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214534 ID=DT214534; Name=DT214534; organism=Citrus sinensis; type=EST; length=544bp
GTAATAGACTTGGCAACATCTTATGACCACACACCGAAAAAGCCGATCAA
AAACTACAACATAACATCAACAATGTTGCAAATCTAGCAACATACAATAA
TCTTAATAAACGACCTGTTTGCTAATGGGGAGAACTTCAGTTCTCACTCA
CAACTCAAGCAAAATCCACACTAACGAAGATGGAAACAAATTAGCCCTCT
AGATAACATAATCAGACCATTCATGTATATGTGATGTGTGGTCCATTGTG
AAGCTAGGGATTTTATCAAGCATGAATGGATTTTCCTTTCCCCCAATCAG
CCTAGCCGGGTTACCAACAGCAGTTGTTCTTGGTGGAACATCCTTTAAAA
CTACAGAACCAGCACCAATTTTAGCCCCATCACCGATCTTAATGTTCCCC
AAAATGCAAGTGCCTGCACCAACCAACACCCCGTTCCCAATTTTCGGATG
CCTATCACCAGACATTTTCCCTGTGCCCCCTAATGTAACATTGTGCAAAA
TTGACACATTATGTCCGATCACCGCCGTCTCTCCGACGACAACT
back to top