DT214534

Overview
NameDT214534
Unique NameDT214534
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length544
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8218 contig Csv1_Contig8218:133..676. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DT214534 vs. ExPASy Swiss-Prot
Match: CYSE_STAXY (Serine acetyltransferase OS=Staphylococcus xylosus GN=cysE PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.406e-13
Identity = 39/83 (46.99%), Postives = 47/83 (56.63%), Query Frame = -2
Query:  295 VVVGETAVIGHNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILXXXXXXXXXXXXXGSVVLKDVPPRTTAVGNPARLI 543
            VV+GET  IG NV+I   VTLGGTGK  G RHP IG+ VL+ AG  +L              SVVL  VP  +T VG P  ++
Sbjct:   89 VVIGETCRIGDNVTIYQGVTLGGTGKERGKRHPDIGDNVLIAAGAKVLGNITINANVNIGANSVVLNSVPSYSTVVGIPGHIV 171          
BLAST of DT214534 vs. ExPASy Swiss-Prot
Match: CYSE_BUCAP (Serine acetyltransferase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=cysE PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.054e-12
Identity = 39/84 (46.43%), Postives = 53/84 (63.10%), Query Frame = -2
Query:  295 VVVGETAVIGHNVSILHNVTLGGTGKMSG-DRHPKIGNGVLVGAGTCILXXXXXXXXXXXXXGSVVLKDVPPRTTAVGNPARLI 543
            +V+GE  +I ++VSI H+VTLGGTG  +G +RHP I   V +GAG  IL             GS+VLK++PP  T VG PA++I
Sbjct:  162 IVIGEGVIIENDVSIFHSVTLGGTGSNTGKNRHPIIRKNVTIGAGAKILGNIEVGQGVKVGAGSIVLKNIPPFVTVVGVPAKII 245          
BLAST of DT214534 vs. ExPASy Swiss-Prot
Match: CYSE_BACSU (Serine acetyltransferase OS=Bacillus subtilis GN=cysE PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.054e-12
Identity = 38/83 (45.78%), Postives = 48/83 (57.83%), Query Frame = -2
Query:  295 VVVGETAVIGHNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILXXXXXXXXXXXXXGSVVLKDVPPRTTAVGNPARLI 543
            VV+GET  IG+NV++   VTLGGTGK  G RHP I +  L+  G  +L             GSVVL DVP  +T VG P R++
Sbjct:   87 VVIGETCEIGNNVTVFQGVTLGGTGKEKGKRHPTIKDDALIATGAKVLGSITVGEGSKIGAGSVVLHDVPDFSTVVGIPGRVV 169          
BLAST of DT214534 vs. ExPASy Swiss-Prot
Match: SAT_SCHPO (Putative serine acetyltransferase OS=Schizosaccharomyces pombe GN=SPAC1039.08 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.060e-11
Identity = 36/84 (42.86%), Postives = 48/84 (57.14%), Query Frame = -2
Query:  292 VVVGETAVIGHNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILXXXXXXXXXXXXXGSVVLKDVPPRTTAVGNPARLIG 543
            +V+GETA++   VSI HNVTLG T K SG RHP I    ++  G  +L             G++V KDV P   A+G+PAR +G
Sbjct:  170 IVIGETAIVEDGVSIWHNVTLGSTFKDSGARHPVIRKNAMLCTGATVLGRVEVGENAVVAAGALVTKDVAPNRLALGSPARDVG 253          
The following BLAST results are available for this feature:
BLAST of DT214534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
CYSE_STAXY5.406e-1346.99Serine acetyltransferase OS=Staphylococcus xylosus... [more]
CYSE_BUCAP2.054e-1246.43Serine acetyltransferase OS=Buchnera aphidicola su... [more]
CYSE_BACSU2.054e-1245.78Serine acetyltransferase OS=Bacillus subtilis GN=c... [more]
SAT_SCHPO5.060e-1142.86Putative serine acetyltransferase OS=Schizosacchar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10D01_b2 Ruby Orange Developing Seed cDNA Library UCRCS09-2 Citrus sinensis cDNA clone UCRCS09-10D01-H1-1-4.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214534 ID=DT214534; Name=DT214534; organism=Citrus sinensis; type=EST; length=544bp
GTAATAGACTTGGCAACATCTTATGACCACACACCGAAAAAGCCGATCAA
AAACTACAACATAACATCAACAATGTTGCAAATCTAGCAACATACAATAA
TCTTAATAAACGACCTGTTTGCTAATGGGGAGAACTTCAGTTCTCACTCA
CAACTCAAGCAAAATCCACACTAACGAAGATGGAAACAAATTAGCCCTCT
AGATAACATAATCAGACCATTCATGTATATGTGATGTGTGGTCCATTGTG
AAGCTAGGGATTTTATCAAGCATGAATGGATTTTCCTTTCCCCCAATCAG
CCTAGCCGGGTTACCAACAGCAGTTGTTCTTGGTGGAACATCCTTTAAAA
CTACAGAACCAGCACCAATTTTAGCCCCATCACCGATCTTAATGTTCCCC
AAAATGCAAGTGCCTGCACCAACCAACACCCCGTTCCCAATTTTCGGATG
CCTATCACCAGACATTTTCCCTGTGCCCCCTAATGTAACATTGTGCAAAA
TTGACACATTATGTCCGATCACCGCCGTCTCTCCGACGACAACT
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