DT214494
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.351e-12 Identity = 51/184 (27.72%), Postives = 81/184 (44.02%), Query Frame = -1 Query: 368 RYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEG--------DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQF 877 R +V+ +V++D TGRS+G+GFV E A + NG R +R+ A +S G G S G DSSN ++VG L V D L++ FS+ G + K+ +G GFV +++ + +A+ LNG + +S+R+S +QF Sbjct: 109 RAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSN-RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEERPRRQF 291
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.305e-12 Identity = 44/160 (27.50%), Postives = 81/160 (50.62%), Query Frame = -1 Query: 431 HETFASRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI-----PVGKGCGFVQFANRENAEEALHKLNG 895 H+TF+S + ++ + KV D++ G+SKGYGFV++ ++ +A+ ++NG+ + + + +G R+ + + + T ++V L + TD+DL+ F +YG+I S + KG GFV F N ++A A+ LNG Sbjct: 141 HDTFSS-FGNIVSCKVAVDSS-GQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQ---------------------ERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNG 277 HSP 2 Score: 69.707 bits (169), Expect = 2.549e-11 Identity = 48/176 (27.27%), Postives = 88/176 (50.00%), Query Frame = -1 Query: 365 YPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDS-SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVG--KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQFR 874 Y + +A V+ D G+SKG+GFV F + ++ ++A+ +NG + +G A + Q + D ++ ++V LDP+++DE L++ FS +G + S K+ P G KG GFV FA E A EA+ +L+G +I + + ++ + +++ R Sbjct: 238 YGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYE----------QNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVR 402
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: ELAV3_XENTR (ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.305e-12 Identity = 50/189 (26.46%), Postives = 87/189 (46.03%), Query Frame = -1 Query: 362 ETFASRYPSV---KAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI-------PVGKGCGFVQFANRENAEEALHKLNG--TVIGKQSVRLSWGRNPANKQFRA 892 E F S + S+ ++ K+V D TG+S GYGFV + D N+ +A+ +NG+ ++ +++ A P S + ++V L + +++ Q FSQYG I + +I V +G GF++F R AEEA+ LNG + + + + + NP+ K +A Sbjct: 49 EEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARP---------------------------SSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKFANNPSQKTGQA 210
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: ELAV3_XENLA (ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.305e-12 Identity = 50/188 (26.60%), Postives = 87/188 (46.28%), Query Frame = -1 Query: 362 ETFASRYPSV---KAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRENAEEALHKLNG--TVIGKQSVRLSWGRNPANKQFRA 892 E F S + S+ ++ K+V D TG+S GYGFV + D N+ +A+ +NG+ ++ +++ A P S + ++V L + +++ Q FSQYG I + +I V +G GF++F R AEEA+ LNG + + + + + NP+ K +A Sbjct: 48 EEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARP---------------------------SSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKFANNPSQKTGQA 208
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: ELAV2_XENTR (ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 2.305e-12 Identity = 47/172 (27.33%), Postives = 80/172 (46.51%), Query Frame = -1 Query: 374 VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRENAEEALHKLNGTVI--GKQSVRLSWGRNPANK 865 +++ K+V D TG+S GYGFV + D + +A+ +NG+ ++ +++ A P S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R AEEA+ LNG + + + + NP+ K Sbjct: 93 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP---------------------------SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 237
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: ELAV2_RAT (ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.305e-12 Identity = 47/176 (26.70%), Postives = 82/176 (46.59%), Query Frame = -1 Query: 362 VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRENAEEALHKLNGTVI--GKQSVRLSWGRNPANKQFRA 865 +++ K+V D TG+S GYGFV + D + +A+ +NG+ ++ +++ A P S + ++V GL +T ++L Q FSQYG I + +I + +G GF++F R AEEA+ LNG + + + + NP+ K +A Sbjct: 65 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP---------------------------SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQA 213
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: ELAV2_PONAB (ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.305e-12 Identity = 47/176 (26.70%), Postives = 82/176 (46.59%), Query Frame = -1 Query: 362 VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRENAEEALHKLNGTVI--GKQSVRLSWGRNPANKQFRA 865 +++ K+V D TG+S GYGFV + D + +A+ +NG+ ++ +++ A P S + ++V GL +T ++L Q FSQYG I + +I + +G GF++F R AEEA+ LNG + + + + NP+ K +A Sbjct: 65 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP---------------------------SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQA 213
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: ELAV2_MOUSE (ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.305e-12 Identity = 47/176 (26.70%), Postives = 82/176 (46.59%), Query Frame = -1 Query: 362 VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRENAEEALHKLNGTVI--GKQSVRLSWGRNPANKQFRA 865 +++ K+V D TG+S GYGFV + D + +A+ +NG+ ++ +++ A P S + ++V GL +T ++L Q FSQYG I + +I + +G GF++F R AEEA+ LNG + + + + NP+ K +A Sbjct: 65 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP---------------------------SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQA 213
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: ELAV2_HUMAN (ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 2.305e-12 Identity = 47/176 (26.70%), Postives = 82/176 (46.59%), Query Frame = -1 Query: 362 VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRENAEEALHKLNGTVI--GKQSVRLSWGRNPANKQFRA 865 +++ K+V D TG+S GYGFV + D + +A+ +NG+ ++ +++ A P S + ++V GL +T ++L Q FSQYG I + +I + +G GF++F R AEEA+ LNG + + + + NP+ K +A Sbjct: 65 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP---------------------------SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQA 213
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.932e-12 Identity = 49/183 (26.78%), Postives = 90/183 (49.18%), Query Frame = -1 Query: 344 SRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQFRADYGNQW 880 S++ + KV+ D N G+SKG+GFV + + ++A+ EMNG S + + +G A + + QG +++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG ++G + + ++ + ++ +A NQ+ Sbjct: 212 SQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQG---------VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQR--KEERKAHLTNQY 382 HSP 2 Score: 68.1662 bits (165), Expect = 7.416e-11 Identity = 52/180 (28.89%), Postives = 85/180 (47.22%), Query Frame = -1 Query: 371 HETFASRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVG--KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 895 ++TF S + ++ + KVV D N SKGY FV F +A+ +MNG+ + R + +G RK A GA + T +++ V DE L++ FSQ+G+ SVK+ P G KG GFV + E+A +A+ ++NG I + + + + +Q Sbjct: 116 YDTF-SAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK-----------EREAELGAKAK--------EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQ 273 The following BLAST results are available for this feature:
BLAST of DT214494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 57
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Sequences
The
following sequences are available for this feature:
EST sequence >DT214494 ID=DT214494; Name=DT214494; organism=Citrus sinensis; type=EST; length=895bpback to top |