DT214494

Overview
NameDT214494
Unique NameDT214494
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6523 contig Csv1_Contig6523:1..895. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.351e-12
Identity = 51/184 (27.72%), Postives = 81/184 (44.02%), Query Frame = -1
Query:  368 RYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEG--------DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQF 877
            R  +V+  +V++D  TGRS+G+GFV      E   A  + NG     R +R+ A                   +S G    G  S G        DSSN  ++VG L   V D  L++ FS+ G +   K+         +G GFV +++ +   +A+  LNG  +  +S+R+S       +QF
Sbjct:  109 RAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSN-RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEERPRRQF 291          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.305e-12
Identity = 44/160 (27.50%), Postives = 81/160 (50.62%), Query Frame = -1
Query:  431 HETFASRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI-----PVGKGCGFVQFANRENAEEALHKLNG 895
            H+TF+S + ++ + KV  D++ G+SKGYGFV++ ++    +A+ ++NG+  + + + +G    R+                     +   +   +  T ++V  L  + TD+DL+  F +YG+I S  +        KG GFV F N ++A  A+  LNG
Sbjct:  141 HDTFSS-FGNIVSCKVAVDSS-GQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQ---------------------ERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNG 277          

HSP 2 Score: 69.707 bits (169), Expect = 2.549e-11
Identity = 48/176 (27.27%), Postives = 88/176 (50.00%), Query Frame = -1
Query:  365 YPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDS-SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVG--KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQFR 874
            Y  + +A V+ D   G+SKG+GFV F + ++ ++A+  +NG     +   +G A  +                      Q  +   D   ++ ++V  LDP+++DE L++ FS +G + S K+   P G  KG GFV FA  E A EA+ +L+G +I  + + ++  +   +++ R
Sbjct:  238 YGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYE----------QNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVR 402          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: ELAV3_XENTR (ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.305e-12
Identity = 50/189 (26.46%), Postives = 87/189 (46.03%), Query Frame = -1
Query:  362 ETFASRYPSV---KAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI-------PVGKGCGFVQFANRENAEEALHKLNG--TVIGKQSVRLSWGRNPANKQFRA 892
            E F S + S+   ++ K+V D  TG+S GYGFV + D N+  +A+  +NG+   ++ +++  A P                           S     +  ++V  L   +  +++ Q FSQYG I + +I        V +G GF++F  R  AEEA+  LNG   +   + + + +  NP+ K  +A
Sbjct:   49 EEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARP---------------------------SSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKFANNPSQKTGQA 210          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: ELAV3_XENLA (ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.305e-12
Identity = 50/188 (26.60%), Postives = 87/188 (46.28%), Query Frame = -1
Query:  362 ETFASRYPSV---KAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRENAEEALHKLNG--TVIGKQSVRLSWGRNPANKQFRA 892
            E F S + S+   ++ K+V D  TG+S GYGFV + D N+  +A+  +NG+   ++ +++  A P                           S     +  ++V  L   +  +++ Q FSQYG I + +I       V +G GF++F  R  AEEA+  LNG   +   + + + +  NP+ K  +A
Sbjct:   48 EEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARP---------------------------SSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKFANNPSQKTGQA 208          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: ELAV2_XENTR (ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.305e-12
Identity = 47/172 (27.33%), Postives = 80/172 (46.51%), Query Frame = -1
Query:  374 VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRENAEEALHKLNGTVI--GKQSVRLSWGRNPANK 865
            +++ K+V D  TG+S GYGFV + D  +  +A+  +NG+   ++ +++  A P                           S     +  ++V GL   +T ++L Q FSQYG I + +I       V +G GF++F  R  AEEA+  LNG       + + + +  NP+ K
Sbjct:   93 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP---------------------------SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 237          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: ELAV2_RAT (ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.305e-12
Identity = 47/176 (26.70%), Postives = 82/176 (46.59%), Query Frame = -1
Query:  362 VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRENAEEALHKLNGTVI--GKQSVRLSWGRNPANKQFRA 865
            +++ K+V D  TG+S GYGFV + D  +  +A+  +NG+   ++ +++  A P                           S     +  ++V GL   +T ++L Q FSQYG I + +I       + +G GF++F  R  AEEA+  LNG       + + + +  NP+ K  +A
Sbjct:   65 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP---------------------------SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQA 213          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: ELAV2_PONAB (ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.305e-12
Identity = 47/176 (26.70%), Postives = 82/176 (46.59%), Query Frame = -1
Query:  362 VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRENAEEALHKLNGTVI--GKQSVRLSWGRNPANKQFRA 865
            +++ K+V D  TG+S GYGFV + D  +  +A+  +NG+   ++ +++  A P                           S     +  ++V GL   +T ++L Q FSQYG I + +I       + +G GF++F  R  AEEA+  LNG       + + + +  NP+ K  +A
Sbjct:   65 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP---------------------------SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQA 213          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: ELAV2_MOUSE (ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.305e-12
Identity = 47/176 (26.70%), Postives = 82/176 (46.59%), Query Frame = -1
Query:  362 VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRENAEEALHKLNGTVI--GKQSVRLSWGRNPANKQFRA 865
            +++ K+V D  TG+S GYGFV + D  +  +A+  +NG+   ++ +++  A P                           S     +  ++V GL   +T ++L Q FSQYG I + +I       + +G GF++F  R  AEEA+  LNG       + + + +  NP+ K  +A
Sbjct:   65 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP---------------------------SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQA 213          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: ELAV2_HUMAN (ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.305e-12
Identity = 47/176 (26.70%), Postives = 82/176 (46.59%), Query Frame = -1
Query:  362 VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRENAEEALHKLNGTVI--GKQSVRLSWGRNPANKQFRA 865
            +++ K+V D  TG+S GYGFV + D  +  +A+  +NG+   ++ +++  A P                           S     +  ++V GL   +T ++L Q FSQYG I + +I       + +G GF++F  R  AEEA+  LNG       + + + +  NP+ K  +A
Sbjct:   65 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP---------------------------SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQA 213          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.932e-12
Identity = 49/183 (26.78%), Postives = 90/183 (49.18%), Query Frame = -1
Query:  344 SRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQFRADYGNQW 880
            S++    + KV+ D N G+SKG+GFV +    + ++A+ EMNG   S + + +G A  +                   +  QG           +++  LD  + DE LR+ FS +G I S K+ +     KG GFV F++ E A +A+ ++NG ++G + + ++  +    ++ +A   NQ+
Sbjct:  212 SQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQG---------VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQR--KEERKAHLTNQY 382          

HSP 2 Score: 68.1662 bits (165), Expect = 7.416e-11
Identity = 52/180 (28.89%), Postives = 85/180 (47.22%), Query Frame = -1
Query:  371 HETFASRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVG--KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 895
            ++TF S + ++ + KVV D N   SKGY FV F       +A+ +MNG+  + R + +G    RK              A  GA  +          T +++      V DE L++ FSQ+G+  SVK+   P G  KG GFV +   E+A +A+ ++NG  I  + + +   +    +Q
Sbjct:  116 YDTF-SAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK-----------EREAELGAKAK--------EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQ 273          
The following BLAST results are available for this feature:
BLAST of DT214494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ROC2_NICSY1.351e-1227.7229 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
PABP2_ARATH2.305e-1227.50Polyadenylate-binding protein 2 OS=Arabidopsis tha... [more]
ELAV3_XENTR2.305e-1226.46ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl... [more]
ELAV3_XENLA2.305e-1226.60ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE... [more]
ELAV2_XENTR2.305e-1227.33ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl... [more]
ELAV2_RAT2.305e-1226.70ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2... [more]
ELAV2_PONAB2.305e-1226.70ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2... [more]
ELAV2_MOUSE2.305e-1226.70ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2... [more]
ELAV2_HUMAN2.305e-1226.70ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1... [more]
PABP4_HUMAN3.932e-1226.78Polyadenylate-binding protein 4 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_18F08_b2 Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07-2 Citrus sinensis cDNA clone UCRCS07-18F08-L16-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214494 ID=DT214494; Name=DT214494; organism=Citrus sinensis; type=EST; length=895bp
TTAGTTCTAGACAATAATAAATCCAATCCCTAGAAACTACCTCAGGTCGT
CATAATTCAATTCCGCTCCACAATGGACGGCATTTTATAAGAATTACTAC
AGAACCAAGAGACTACCGAAGATCAGGCACATTTGCCCTTTCTAGCGTGA
TAACGTTTAAATTTCTAGAGCTATACGTATTCTCTCCCGTGCAGTTACCT
CAGCTTACTTGTTGTTGGTGGCTGCCATACACAGGGTAAGCCCCATAGGC
CGCAGCTGCTGCAGCGTACATGCTTGGGTCATTTGGTGGCGGAATAGCAT
ACCCATAACCATCATAAACTTGCCCTCCATAGTATGCCCCACTCCATTGA
TTGCCATAATCTGCCCTAAACTGCTTATTTGCTGGGTTGCGCCCCCAAGA
AAGACGCACACTTTGCTTGCCAATTACTGTCCCATTCAACTTATGCAGTG
CTTCCTCAGCATTCTCTCTGTTGGCAAATTGTACGAATCCGCATCCTTTC
CCGACTGGTATTTTAACCGAGGCTATTTCGCCATACTGAGAGAAAGGTTG
TCGTAGATCTTCATCTGTGACATTAGGGTCAAGGCCACCAACAAATATTG
TTGTGTTTGAAGAGTCTCCTTCAGATTGAGGGCCTTGGCCTGGGGCACCA
TTTGACGCATACCCTCCTTGAGAAGAGTATTGCTGTTGATAACCAGAGGA
CTTCCTTGGAGTTGCAGCACCAATACGCATAGGCCTGCTTGAACAATAGA
CACCATTCATTTCAGTCATGGCCTGGGACCTCTCATTATCATCTCCAAAC
CTTACAAAACCATAACCTTTTGATCGACCAGTATTGGCATCAAAGACAAC
TTTTGCTGCTTTAACAGAAGGATATCTACTAGCAAAAGTTTCATG
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