DT214494
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 7.416e-11 Identity = 48/178 (26.97%), Postives = 84/178 (47.19%), Query Frame = -1 Query: 371 ETFASRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 892 E F P++ + KV+ D +G+SKG+GFV F + +A+ EMNG + + + +G A + QG ++V LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG ++ + + ++ + +Q Sbjct: 209 ELFGKFGPAL-SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG---------VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 7.416e-11 Identity = 48/178 (26.97%), Postives = 84/178 (47.19%), Query Frame = -1 Query: 371 ETFASRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 892 E F P++ + KV+ D +G+SKG+GFV F + +A+ EMNG + + + +G A + QG ++V LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG ++ + + ++ + +Q Sbjct: 209 ELFGKFGPAL-SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG---------VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: SR140_MOUSE (U2-associated protein SR140 OS=Mus musculus GN=Sr140 PE=1 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 9.685e-11 Identity = 35/91 (38.46%), Postives = 51/91 (56.04%), Query Frame = -1 Query: 389 GPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---------PVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 634 G GD S T +++G ++P + +E L Q F ++G +ASVKI + CGFV F +R +AE AL LNG +I ++L WGR Sbjct: 264 GSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGFVAFMSRRDAERALKNLNGKMIMSFEMKLGWGR 354
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 9.685e-11 Identity = 45/168 (26.79%), Postives = 80/168 (47.62%), Query Frame = -1 Query: 407 HETFASRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQFANRENAEEALHKLNGTVIGKQSV 895 H+TFA+ + ++ + KV D G SKGYGFV + + A+ +NG+ + + + +G +K Q E ++ T I++ +DP V DE+ R+ F ++GEI S + +G GFV F+ E+A+ A+ ++N + Q + Sbjct: 147 HDTFAA-FGNILSCKVAQD-EFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDR-------------------QSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKL 293
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 9.685e-11 Identity = 45/167 (26.95%), Postives = 79/167 (47.31%), Query Frame = -1 Query: 371 AAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 859 + KV+ D +G+SKG+GFV F + +A+ EMNG + + + +G A + QG ++V LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG ++ + + ++ + +Q Sbjct: 219 SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG---------VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 9.685e-11 Identity = 45/167 (26.95%), Postives = 79/167 (47.31%), Query Frame = -1 Query: 371 AAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 859 + KV+ D +G+SKG+GFV F + +A+ EMNG + + + +G A + QG ++V LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG ++ + + ++ + +Q Sbjct: 219 SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG---------VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 9.685e-11 Identity = 45/167 (26.95%), Postives = 79/167 (47.31%), Query Frame = -1 Query: 371 AAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 859 + KV+ D +G+SKG+GFV F + +A+ EMNG + + + +G A + QG ++V LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG ++ + + ++ + +Q Sbjct: 219 SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG---------VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375 The following BLAST results are available for this feature:
BLAST of DT214494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 57
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Sequences
The
following sequences are available for this feature:
EST sequence >DT214494 ID=DT214494; Name=DT214494; organism=Citrus sinensis; type=EST; length=895bpback to top |