DT214489

Overview
NameDT214489
Unique NameDT214489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8653 contig Csv1_Contig8653:237..1120. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.354e-22
Identity = 70/194 (36.08%), Postives = 93/194 (47.94%), Query Frame = -1
Query:  138 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSS----------------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 656
            PGD G+D  GL+ DPE      + E+++SRWAMLG +G   PE+  K G+      W+ AG ++ FA                    ++  + +L  +VE  R      P     DP+            YPGG F+PL  A       E K KEL NGRLAM +  GF VQ  VTGKGP +NL  H++DP  N
Sbjct:   74 PGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAG-SQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGG--GPLGEGLDPL------------YPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVAN 252          
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.992e-22
Identity = 69/183 (37.70%), Postives = 96/183 (52.46%), Query Frame = -1
Query:  138 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 656
            PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+      W+  G ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   76 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGG-SQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 254          
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.992e-22
Identity = 69/183 (37.70%), Postives = 96/183 (52.46%), Query Frame = -1
Query:  138 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 656
            PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+      W+  G ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   73 PGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKG-SQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVVDPLYPGGSFDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 251          
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.132e-22
Identity = 71/182 (39.01%), Postives = 95/182 (52.20%), Query Frame = -1
Query:  138 GDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 653
            GD G+D  GL+ DPE      + E++++RWAMLG +G L PE+  K G+      W+ AG A+ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A       E K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP  N
Sbjct:   78 GDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVAN 255          
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.132e-22
Identity = 69/193 (35.75%), Postives = 94/193 (48.70%), Query Frame = -1
Query:  138 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 656
            PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+F + G+      W  AG         +Y  + S         ++  + +L   VE   ++    P  V  DP+            YPGG F+PL  A   EA    K KE  NGRLAM +  GF +Q  VTGKGP ENL  H+ DP +N
Sbjct:   76 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVE--GYRVAGGPLGVVVDPL------------YPGGSFDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNN 254          
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.193e-21
Identity = 69/183 (37.70%), Postives = 96/183 (52.46%), Query Frame = -1
Query:  138 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 656
            PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA    K K + NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   76 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 254          
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.034e-21
Identity = 73/188 (38.83%), Postives = 99/188 (52.66%), Query Frame = -1
Query:  180 LDGFSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFAPT-------------DEAKEKELANGRLAMLAFLGFIVQHNVTGKGP 674
            LDG SLPGD GFDPLGL +DP  LKWY +AEL++ RWAML V+G+ + + +T I       W++AG    A    S  TL   + +L  +VE +RW D  +P S + +         + +S    E GYPGG  F+PL+ A T             +  K  E+ + RLAMLA L F  +    GK P
Sbjct:   76 LDG-SLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGI------PWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEAG-QGKTP 255          
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.657e-21
Identity = 69/183 (37.70%), Postives = 96/183 (52.46%), Query Frame = -1
Query:  138 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 656
            PGD G+D   L+ DPE      + E+++ RWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   76 PGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 254          
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.470e-21
Identity = 67/186 (36.02%), Postives = 97/186 (52.15%), Query Frame = -1
Query:  138 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 656
            PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   +   W   +   G+V      + Y +    +G      YPGG F+PL  A   +A    K KE+ NGRLAM +  GF VQ  VTGKGP E+L  HI+DP +N
Sbjct:   75 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAG-SQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAV------EGYRIAGGPLGEIVDPLYPGGSFDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNN 253          
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.919e-21
Identity = 70/195 (35.90%), Postives = 93/195 (47.69%), Query Frame = -1
Query:  138 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTK---IGIINVPQWYDAGKA-------EYFASSSTL--------FVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 656
            PGD G+D  GL+ DPE  K Y + EL+++R  +LG +GM+ PE+      I   +   W+ AG A        Y  + S +          ++ +L   VE  R      P     DP+            YPG  F+PL  A       E K KE+ NGRLAM A LGF VQ  VTGKGP ENL  H+++P  N
Sbjct:   81 PGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNG--GPAGEGLDPL------------YPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAEN 261          
The following BLAST results are available for this feature:
BLAST of DT214489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
CB215_PEA5.354e-2236.08Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB23_NICPL6.992e-2237.70Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB22_HORVU6.992e-2237.70Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2_PHYPA9.132e-2239.01Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_PETSP9.132e-2235.75Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB25_TOBAC1.193e-2137.70Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB4_SPIOL2.034e-2138.83Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB25_PETSP2.657e-2137.70Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB21_WHEAT3.470e-2136.02Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2_DUNSA5.919e-2135.90Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_023A07_T72 Ruby Orange Developing Flower cDNA Library UCRCS04-2 Citrus sinensis cDNA clone UCRCS04_023_VN_A07_rd, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214489 ID=DT214489; Name=DT214489; organism=Citrus sinensis; type=EST; length=884bp
ATTGAGGGTTTCCATGTTTACATTGATGCTCAAATCTCACTCAAAAACTA
CAGATTCATGGTTACAAAAGAAAGAAACAGGATCCCGAATTGCCAATCCA
TCTTTGATTAATTACCACTAAGTGTCTGGACGATGGTGTTGTGCCATGGG
TCAGAGATATGTTGCAGGAGGTTTTCAAATGGCCCTTTGCCTGTCACATT
GTGCTGAACAATAAATCCCAAGAATGCCAACATTGCCAATCTCCCATTGG
CAAGCTCCTTCTCCTTTGCCTCATCAGTGGGTGCAAAGTTGAGTGGGTTG
AAGATGCCACCGGGGTACCCAACTTCGTTTGGAGGCAAGCTGTACTGCTT
GAAAATGGGGTCTTGGTTGACACTTCCTGGGTTCTTTATGTCTTGCCATC
TTCTTATCTCCACATAGTGGAACAAGATGAACTCGATCACGAAAAGGGTC
GATGATGATGCAAAGTACTCAGCCTTCCCAGCATCATACCATTGAGGAAC
ATTAATAATTCCAATCTTTGTGAAAACTTCGGGCAACAACATTCCAACAA
CACCCAACATGGCCCAGCGCGAATTCACAAGCTCGGCTTGCACATACCAC
TTCAAGTTCTCAGGATCCTCGGCAAGCCCCAAGGGGTCAAATCCATTGTC
ACCGGGGAGGCTAAAACCATCAAGAGATTTTGTAAATGTTAGATTTTTAG
TAGCATGAAATGATAGCAACACTTTGTTTACAAAATCAGGAGGATATAGA
GAATTTGGTATTAGAAGTAATGTAAAATATGACGTGACATTGTTCTAAAC
TGATCGCATATATGCATGTGACATCAGTTGTTGACATGACTTTGAGGGGG
TTTTGTTTGAGTTAAGTTTTGTACCTGCCGTTGA
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