FC871221

Overview
NameFC871221
Unique NameFC871221
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_COLP3 (Malate dehydrogenase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=mdh PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 2 
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 241
            VEAK G GSATLSM  AAA+F  + ++GL+G+  V++ AYV     +  FFA  VRLG  G+ EI   G L+ +E+   E
Sbjct:  214 VEAKAGGGSATLSMGAAAARFCMSLVKGLQGE-DVVDYAYVEGNGADAQFFAQPVRLGVNGVSEILPYGELSAFEQKAKE 292
The following BLAST results are available for this feature:
BLAST of FC871221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
MDH_COLP37.972e-1146.25Malate dehydrogenase OS=Colwellia psychrerythraea ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2AG05FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2AG05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871221 ID=FC871221; Name=FC871221; organism=Citrus sinensis; type=EST; length=592bp
AGTTGAGGCAAAAACTGGAGCTGGTTCGGCCACTCTATCGATGGCATATG
CTGCTGCCAAGTTTGCCGATGCTTGTCTCCGAGGCTTGAGGGGGGATGCC
GGTGTTATTGAGTGTGCATACGTGGCTTCTACGGTGACTGAACTCCCTTT
CTTTGCATCCAAGGTACGGCTTGGCCGTGCTGGAATTGAGGAAATTTACT
CACTTGGCCCATTGAATGAGTATGAGAGGGCTGGTTTGGAAAGGCAAAGA
AAGAGTTAGCGGGAAGCATTCAGAAGGGAGTCAGTTTTGTCAGGAAATGA
GTAACCAATCACATGGTGACTAATGATAATGGTTGTGCTTTTGTTGTTTG
CCTCAAATATCTCAAGATTACTTTCCCCAGAATAAGAGGTAGGGTTTTCG
TTTTTCCATAATCAGATTGAATTAAGTTAGTTACAAAGAAGAAGCAAAAG
ATTCATCTTAGTGGGGTTGGTTTGGTTCTTTTGATATTCTTGTAATGAAG
GGATAAAGAATATGTAGATGACGAACTGCCGCCTGTTTTATCATTTTAAT
CAATTCAAAATCAGAGTTCATACTAAAAAAAAAAAAAAAAAA
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