FC871221

Overview
NameFC871221
Unique NameFC871221
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_PHOLL (Malate dehydrogenase OS=Photorhabdus luminescens subsp. laumondii GN=mdh PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.100e-15
Identity = 40/80 (50.00%), Postives = 55/80 (68.75%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 241
            VEAK G GSATLSM  AAA+   + +RGL+G++ V+ECAYV        FFA  VRLG+ G+EE  ++G L+++E+  LE
Sbjct:  214 VEAKAGGGSATLSMGQAAARLGLSLVRGLQGESDVVECAYVEGDGKYARFFAQPVRLGKNGVEERLNIGELSDFEQKALE 293          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_HAEIG (Malate dehydrogenase OS=Haemophilus influenzae (strain PittGG) GN=mdh PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.188e-14
Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 241
            V AK G GSATLSMA AAA+FA + ++GL G+  V+EC YV        FF+  VRLG+ G+EEI  +GPL+ +E+  LE
Sbjct:  214 VNAKAGGGSATLSMAQAAARFARSLVKGLSGET-VVECTYVEGDGKYARFFSQPVRLGKEGVEEILPIGPLSNFEQQALE 292          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_HAEIE (Malate dehydrogenase OS=Haemophilus influenzae (strain PittEE) GN=mdh PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.188e-14
Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 241
            V AK G GSATLSMA AAA+FA + ++GL G+  V+EC YV        FF+  VRLG+ G+EEI  +GPL+ +E+  LE
Sbjct:  214 VNAKAGGGSATLSMAQAAARFARSLVKGLSGET-VVECTYVEGDGKYARFFSQPVRLGKEGVEEILPIGPLSNFEQQALE 292          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_HAEI8 (Malate dehydrogenase OS=Haemophilus influenzae (strain 86-028NP) GN=mdh PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.188e-14
Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 241
            V AK G GSATLSMA AAA+FA + ++GL G+  V+EC YV        FF+  VRLG+ G+EEI  +GPL+ +E+  LE
Sbjct:  214 VNAKAGGGSATLSMAQAAARFARSLVKGLSGET-VVECTYVEGDGKYARFFSQPVRLGKEGVEEILPIGPLSNFEQQALE 292          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_HAEIN (Malate dehydrogenase OS=Haemophilus influenzae GN=mdh PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.648e-14
Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 241
            + AK G GSATLSMA AAA+FA + ++GL G+  V+EC YV        FF+  VRLG+ G+EEI  +GPL+ +E+  LE
Sbjct:  214 LNAKAGGGSATLSMAQAAARFARSLVKGLSGET-VVECTYVEGDGKYARFFSQPVRLGKEGVEEILPIGPLSNFEQQALE 292          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_VIBFM (Malate dehydrogenase OS=Vibrio fischeri (strain MJ11) GN=mdh PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.458e-14
Identity = 39/80 (48.75%), Postives = 51/80 (63.75%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 241
            VEAK G GSATLSM  AA +F  + ++ L G+ GV+ECAYV        FFA  + LG+ G+EEI S G L+ +E+  LE
Sbjct:  214 VEAKAGGGSATLSMGQAACRFGLSLVKALSGEQGVVECAYVEGNGEHARFFAQPILLGKNGVEEIQSYGELSAFEQEALE 293          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_VIBF1 (Malate dehydrogenase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=mdh PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.458e-14
Identity = 39/80 (48.75%), Postives = 51/80 (63.75%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 241
            VEAK G GSATLSM  AA +F  + ++ L G+ GV+ECAYV        FFA  + LG+ G+EEI S G L+ +E+  LE
Sbjct:  214 VEAKAGGGSATLSMGQAACRFGLSLVKALSGEEGVVECAYVEGNGEHARFFAQPILLGKNGVEEIQSYGELSAFEQEALE 293          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_PASMU (Malate dehydrogenase OS=Pasteurella multocida GN=mdh PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.458e-14
Identity = 42/80 (52.50%), Postives = 54/80 (67.50%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 241
            VEAK G GSATLSMA AAA+FA + ++GL G+  V+EC YV        FFA  VRLG+ G+EEI  LG L+ +E+  L+
Sbjct:  214 VEAKAGGGSATLSMAQAAARFALSLVKGLNGE-NVVECTYVEGDGKYARFFAQPVRLGKEGVEEILPLGSLSAFEQHALD 292          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_HAES2 (Malate dehydrogenase OS=Haemophilus somnus (strain 2336) GN=mdh PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.516e-14
Identity = 42/80 (52.50%), Postives = 54/80 (67.50%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 241
            VEAK G GSATLSMA AAA+FA + ++GL G+  V+EC YV        FFA  VRLG+ G+EEI  +G L+ +E+  LE
Sbjct:  214 VEAKAGGGSATLSMAQAAARFALSLVQGLSGET-VVECTYVEGDGKYARFFAQPVRLGKEGVEEILPVGTLSAFEQKALE 292          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_HAES1 (Malate dehydrogenase OS=Haemophilus somnus (strain 129Pt) GN=mdh PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.516e-14
Identity = 42/80 (52.50%), Postives = 54/80 (67.50%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 241
            VEAK G GSATLSMA AAA+FA + ++GL G+  V+EC YV        FFA  VRLG+ G+EEI  +G L+ +E+  LE
Sbjct:  214 VEAKAGGGSATLSMAQAAARFALSLVQGLSGET-VVECTYVEGDGKYARFFAQPVRLGKEGVEEILPVGTLSAFEQKALE 292          
The following BLAST results are available for this feature:
BLAST of FC871221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
MDH_PHOLL9.100e-1550.00Malate dehydrogenase OS=Photorhabdus luminescens s... [more]
MDH_HAEIG1.188e-1451.25Malate dehydrogenase OS=Haemophilus influenzae (st... [more]
MDH_HAEIE1.188e-1451.25Malate dehydrogenase OS=Haemophilus influenzae (st... [more]
MDH_HAEI81.188e-1451.25Malate dehydrogenase OS=Haemophilus influenzae (st... [more]
MDH_HAEIN2.648e-1450.00Malate dehydrogenase OS=Haemophilus influenzae GN=... [more]
MDH_VIBFM3.458e-1448.75Malate dehydrogenase OS=Vibrio fischeri (strain MJ... [more]
MDH_VIBF13.458e-1448.75Malate dehydrogenase OS=Vibrio fischeri (strain AT... [more]
MDH_PASMU3.458e-1452.50Malate dehydrogenase OS=Pasteurella multocida GN=m... [more]
MDH_HAES24.516e-1452.50Malate dehydrogenase OS=Haemophilus somnus (strain... [more]
MDH_HAES14.516e-1452.50Malate dehydrogenase OS=Haemophilus somnus (strain... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2AG05FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2AG05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871221 ID=FC871221; Name=FC871221; organism=Citrus sinensis; type=EST; length=592bp
AGTTGAGGCAAAAACTGGAGCTGGTTCGGCCACTCTATCGATGGCATATG
CTGCTGCCAAGTTTGCCGATGCTTGTCTCCGAGGCTTGAGGGGGGATGCC
GGTGTTATTGAGTGTGCATACGTGGCTTCTACGGTGACTGAACTCCCTTT
CTTTGCATCCAAGGTACGGCTTGGCCGTGCTGGAATTGAGGAAATTTACT
CACTTGGCCCATTGAATGAGTATGAGAGGGCTGGTTTGGAAAGGCAAAGA
AAGAGTTAGCGGGAAGCATTCAGAAGGGAGTCAGTTTTGTCAGGAAATGA
GTAACCAATCACATGGTGACTAATGATAATGGTTGTGCTTTTGTTGTTTG
CCTCAAATATCTCAAGATTACTTTCCCCAGAATAAGAGGTAGGGTTTTCG
TTTTTCCATAATCAGATTGAATTAAGTTAGTTACAAAGAAGAAGCAAAAG
ATTCATCTTAGTGGGGTTGGTTTGGTTCTTTTGATATTCTTGTAATGAAG
GGATAAAGAATATGTAGATGACGAACTGCCGCCTGTTTTATCATTTTAAT
CAATTCAAAATCAGAGTTCATACTAAAAAAAAAAAAAAAAAA
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