FC871221

Overview
NameFC871221
Unique NameFC871221
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_ACTSZ (Malate dehydrogenase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=mdh PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.516e-14
Identity = 42/80 (52.50%), Postives = 52/80 (65.00%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 241
            VEAK GAGSATLSMAYAA +F  +  R L G+  + ECAY+        FFA  VRLG+ G+EEI  LG L+ +E+  LE
Sbjct:  214 VEAKAGAGSATLSMAYAAMRFVVSMARALNGEV-ITECAYIEGDGKFARFFAQPVRLGKNGVEEILPLGTLSAFEQQALE 292          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_SHIDS (Malate dehydrogenase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=mdh PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.898e-14
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 241
            VEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + LG++G+EE  S+G L+ +E+  LE
Sbjct:  214 VEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKSGVEERKSIGTLSAFEQNALE 293          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_SHELP (Malate dehydrogenase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=mdh PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.898e-14
Identity = 38/75 (50.67%), Postives = 51/75 (68.00%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYE 226
            VEAK G GSATLSM  AA +F  + +RGL+G+A V+ECAYV        FFA  V LG+ GIE++ + G ++E+E
Sbjct:  214 VEAKAGGGSATLSMGQAACRFGLSLVRGLQGEANVVECAYVDGGSEHADFFAQPVLLGKNGIEQVLAYGEVSEFE 288          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_ENT38 (Malate dehydrogenase OS=Enterobacter sp. (strain 638) GN=mdh PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.898e-14
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 241
            VEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + LG+ GIEE  S+G L+ +E+  +E
Sbjct:  214 VEAKAGGGSATLSMGQAAARFGLSLVRALQGEKGVVECAYVEGDGEHARFFSQPLLLGKNGIEERQSIGKLSAFEQQAME 293          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_ECO8A (Malate dehydrogenase OS=Escherichia coli O8 (strain IAI1) GN=mdh PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.898e-14
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 241
            VEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E++ LE
Sbjct:  214 VEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQSALE 293          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_ECO55 (Malate dehydrogenase OS=Escherichia coli (strain 55989 / EAEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.898e-14
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 241
            VEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E++ LE
Sbjct:  214 VEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQSALE 293          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_VIBMA (Malate dehydrogenase OS=Vibrio marinus GN=mdh PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.704e-14
Identity = 37/75 (49.33%), Postives = 50/75 (66.67%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYE 226
            VEAK G GSATLSM  AAA+F  + +R L+G+ G++EC YV        FFA  V LG+ G+EE+ + G L+E+E
Sbjct:  214 VEAKAGGGSATLSMGQAAARFGLSLVRALQGEEGIVECTYVDGGSEHATFFAQPVLLGKNGVEEVLAYGELSEFE 288          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_SALAR (Malate dehydrogenase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=mdh PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.704e-14
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 241
            VEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE
Sbjct:  214 VEAKAGGGSATLSMGQAAARFGLSLVRALQGETGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQRSLE 293          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_MORS5 (Malate dehydrogenase OS=Moritella sp. (strain 5710) GN=mdh PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.704e-14
Identity = 37/75 (49.33%), Postives = 50/75 (66.67%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYE 226
            VEAK G GSATLSM  AAA+F  + +R L+G+ G++EC YV        FFA  V LG+ G+EE+ + G L+E+E
Sbjct:  214 VEAKAGGGSATLSMGQAAARFGLSLVRALQGEKGIVECTYVDGGSEHATFFAQPVLLGKNGVEEVLAYGELSEFE 288          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_MORS2 (Malate dehydrogenase OS=Moritella sp. (strain 2D2) GN=mdh PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.704e-14
Identity = 36/75 (48.00%), Postives = 51/75 (68.00%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYE 226
            VEAK G GSATLSM +AAA+F  + +R L+G+ G++EC YV        FFA  V LG+ G+EE+ + G L+++E
Sbjct:  214 VEAKAGGGSATLSMGHAAARFGLSLVRALQGEKGIVECTYVDGGSEHATFFAQPVLLGKNGVEEVLAYGDLSDFE 288          
The following BLAST results are available for this feature:
BLAST of FC871221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
MDH_ACTSZ4.516e-1452.50Malate dehydrogenase OS=Actinobacillus succinogene... [more]
MDH_SHIDS5.898e-1448.75Malate dehydrogenase OS=Shigella dysenteriae serot... [more]
MDH_SHELP5.898e-1450.67Malate dehydrogenase OS=Shewanella loihica (strain... [more]
MDH_ENT385.898e-1448.75Malate dehydrogenase OS=Enterobacter sp. (strain 6... [more]
MDH_ECO8A5.898e-1448.75Malate dehydrogenase OS=Escherichia coli O8 (strai... [more]
MDH_ECO555.898e-1448.75Malate dehydrogenase OS=Escherichia coli (strain 5... [more]
MDH_VIBMA7.704e-1449.33Malate dehydrogenase OS=Vibrio marinus GN=mdh PE=3... [more]
MDH_SALAR7.704e-1448.75Malate dehydrogenase OS=Salmonella arizonae (strai... [more]
MDH_MORS57.704e-1449.33Malate dehydrogenase OS=Moritella sp. (strain 5710... [more]
MDH_MORS27.704e-1448.00Malate dehydrogenase OS=Moritella sp. (strain 2D2)... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2AG05FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2AG05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871221 ID=FC871221; Name=FC871221; organism=Citrus sinensis; type=EST; length=592bp
AGTTGAGGCAAAAACTGGAGCTGGTTCGGCCACTCTATCGATGGCATATG
CTGCTGCCAAGTTTGCCGATGCTTGTCTCCGAGGCTTGAGGGGGGATGCC
GGTGTTATTGAGTGTGCATACGTGGCTTCTACGGTGACTGAACTCCCTTT
CTTTGCATCCAAGGTACGGCTTGGCCGTGCTGGAATTGAGGAAATTTACT
CACTTGGCCCATTGAATGAGTATGAGAGGGCTGGTTTGGAAAGGCAAAGA
AAGAGTTAGCGGGAAGCATTCAGAAGGGAGTCAGTTTTGTCAGGAAATGA
GTAACCAATCACATGGTGACTAATGATAATGGTTGTGCTTTTGTTGTTTG
CCTCAAATATCTCAAGATTACTTTCCCCAGAATAAGAGGTAGGGTTTTCG
TTTTTCCATAATCAGATTGAATTAAGTTAGTTACAAAGAAGAAGCAAAAG
ATTCATCTTAGTGGGGTTGGTTTGGTTCTTTTGATATTCTTGTAATGAAG
GGATAAAGAATATGTAGATGACGAACTGCCGCCTGTTTTATCATTTTAAT
CAATTCAAAATCAGAGTTCATACTAAAAAAAAAAAAAAAAAA
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