FC871221

Overview
NameFC871221
Unique NameFC871221
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_ECOK1 (Malate dehydrogenase OS=Escherichia coli O1:K1 / APEC GN=mdh PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.314e-13
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = 2 
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 241
            VEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE
Sbjct:  214 VEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALE 293
[Close]
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_ECOHS (Malate dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=mdh PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.314e-13
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = 2 
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 241
            VEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE
Sbjct:  214 VEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALE 293
[Close]
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_ECODH (Malate dehydrogenase OS=Escherichia coli (strain K12 / DH10B) GN=mdh PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.314e-13
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = 2 
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 241
            VEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE
Sbjct:  214 VEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALE 293
[Close]
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_ECOBW (Malate dehydrogenase OS=Escherichia coli (strain K12 / BW2952) GN=mdh PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.314e-13
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = 2 
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 241
            VEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE
Sbjct:  214 VEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALE 293
[Close]
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_ECO81 (Malate dehydrogenase OS=Escherichia coli O81 (strain ED1a) GN=mdh PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.314e-13
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = 2 
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 241
            VEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE
Sbjct:  214 VEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALE 293
[Close]
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_ECO5E (Malate dehydrogenase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.314e-13
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = 2 
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 241
            VEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE
Sbjct:  214 VEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALE 293
[Close]
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_ECO57 (Malate dehydrogenase OS=Escherichia coli O157:H7 GN=mdh PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.314e-13
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = 2 
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 241
            VEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE
Sbjct:  214 VEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALE 293
[Close]
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_ECO45 (Malate dehydrogenase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.314e-13
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = 2 
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 241
            VEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE
Sbjct:  214 VEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALE 293
[Close]
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_ECO27 (Malate dehydrogenase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.314e-13
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = 2 
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 241
            VEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE
Sbjct:  214 VEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALE 293
[Close]
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_ECO24 (Malate dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.314e-13
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = 2 
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 241
            VEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE
Sbjct:  214 VEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALE 293
The following BLAST results are available for this feature:
BLAST of FC871221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
MDH_ECOK11.314e-1348.75Malate dehydrogenase OS=Escherichia coli O1:K1 / A... [more]
MDH_ECOHS1.314e-1348.75Malate dehydrogenase OS=Escherichia coli O9:H4 (st... [more]
MDH_ECODH1.314e-1348.75Malate dehydrogenase OS=Escherichia coli (strain K... [more]
MDH_ECOBW1.314e-1348.75Malate dehydrogenase OS=Escherichia coli (strain K... [more]
MDH_ECO811.314e-1348.75Malate dehydrogenase OS=Escherichia coli O81 (stra... [more]
MDH_ECO5E1.314e-1348.75Malate dehydrogenase OS=Escherichia coli O157:H7 (... [more]
MDH_ECO571.314e-1348.75Malate dehydrogenase OS=Escherichia coli O157:H7 G... [more]
MDH_ECO451.314e-1348.75Malate dehydrogenase OS=Escherichia coli O45:K1 (s... [more]
MDH_ECO271.314e-1348.75Malate dehydrogenase OS=Escherichia coli O127:H6 (... [more]
MDH_ECO241.314e-1348.75Malate dehydrogenase OS=Escherichia coli O139:H28 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2AG05FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2AG05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871221 ID=FC871221; Name=FC871221; organism=Citrus sinensis; type=EST; length=592bp
AGTTGAGGCAAAAACTGGAGCTGGTTCGGCCACTCTATCGATGGCATATG
CTGCTGCCAAGTTTGCCGATGCTTGTCTCCGAGGCTTGAGGGGGGATGCC
GGTGTTATTGAGTGTGCATACGTGGCTTCTACGGTGACTGAACTCCCTTT
CTTTGCATCCAAGGTACGGCTTGGCCGTGCTGGAATTGAGGAAATTTACT
CACTTGGCCCATTGAATGAGTATGAGAGGGCTGGTTTGGAAAGGCAAAGA
AAGAGTTAGCGGGAAGCATTCAGAAGGGAGTCAGTTTTGTCAGGAAATGA
GTAACCAATCACATGGTGACTAATGATAATGGTTGTGCTTTTGTTGTTTG
CCTCAAATATCTCAAGATTACTTTCCCCAGAATAAGAGGTAGGGTTTTCG
TTTTTCCATAATCAGATTGAATTAAGTTAGTTACAAAGAAGAAGCAAAAG
ATTCATCTTAGTGGGGTTGGTTTGGTTCTTTTGATATTCTTGTAATGAAG
GGATAAAGAATATGTAGATGACGAACTGCCGCCTGTTTTATCATTTTAAT
CAATTCAAAATCAGAGTTCATACTAAAAAAAAAAAAAAAAAA
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