FC871221

Overview
NameFC871221
Unique NameFC871221
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDHM_PIG (Malate dehydrogenase, mitochondrial OS=Sus scrofa GN=MDH2 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.578e-13
Identity = 34/75 (45.33%), Postives = 53/75 (70.67%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYE 226
            V+AK GAGSATLSMAYA A+F  + +  + G  GV+EC++V S  T+ P+F++ + LG+ GIE+   +G ++ +E
Sbjct:  238 VKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFE 312          

HSP 2 Score: 20.4014 bits (41), Expect = 1.578e-13
Identity = 10/23 (43.48%), Postives = 13/23 (56.52%), Query Frame = 1
Query:  226 EGWFGKAKKELAGSIQKGVSFVR 294
            E    +A  EL  SI+KG  FV+
Sbjct:  313 EKMIAEAIPELKASIKKGEEFVK 335          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_PROMH (Malate dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=mdh PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.716e-13
Identity = 38/79 (48.10%), Postives = 49/79 (62.03%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL 238
            VEAK G GSATLSM  AAA+F  + +R L G+  VIEC Y         FFA  VRLG+ G+EE   +G L+++E+  L
Sbjct:  214 VEAKAGGGSATLSMGQAAARFGLSLIRALNGEKDVIECTYTEGDGEHARFFAQPVRLGKNGVEEYLPIGQLSDFEKQSL 292          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_KLEP7 (Malate dehydrogenase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=mdh PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.716e-13
Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 241
            VEAK G GSATLSM  AAA+F  + +R ++G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE
Sbjct:  214 VEAKAGGGSATLSMGQAAARFGLSLVRAMQGEKGVVECAYVEGDGHYARFFSQPLLLGKNGVEERQSIGKLSAFEQQALE 293          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_KLEP3 (Malate dehydrogenase OS=Klebsiella pneumoniae (strain 342) GN=mdh PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.716e-13
Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 241
            VEAK G GSATLSM  AAA+F  + +R ++G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE
Sbjct:  214 VEAKAGGGSATLSMGQAAARFGLSLVRAMQGEKGVVECAYVEGDGHYARFFSQPLLLGKNGVEERQSIGKLSAFEQQALE 293          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDHM_BOVIN (Malate dehydrogenase, mitochondrial OS=Bos taurus GN=MDH2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.050e-13
Identity = 34/75 (45.33%), Postives = 53/75 (70.67%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYE 226
            V+AK GAGSATLSMAYA A+F  + +  + G  GV+EC++V S  T+ P+F++ + LG+ GIE+   +G ++ +E
Sbjct:  238 VKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKVSPFE 312          

HSP 2 Score: 20.4014 bits (41), Expect = 2.050e-13
Identity = 10/23 (43.48%), Postives = 13/23 (56.52%), Query Frame = 1
Query:  226 EGWFGKAKKELAGSIQKGVSFVR 294
            E    +A  EL  SI+KG  FV+
Sbjct:  313 EKMIAEAIPELKASIKKGEEFVK 335          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_SHEPA (Malate dehydrogenase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=mdh PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.241e-13
Identity = 37/75 (49.33%), Postives = 50/75 (66.67%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYE 226
            VEAK G GSATLSM  AA +F  + +RGL+G+A V+ECAYV        FFA  V LG+ G+EE+ + G ++ +E
Sbjct:  214 VEAKAGGGSATLSMGQAACRFGLSLVRGLQGEANVVECAYVDGGSEHAEFFAQPVVLGKNGVEEVLAYGEVSAFE 288          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_PECCP (Malate dehydrogenase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=mdh PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.241e-13
Identity = 39/79 (49.37%), Postives = 52/79 (65.82%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL 238
            VEAK G GSATLSM  AAA+F  + +R L+G++GV+ECAYV S      FFA  V LG+ G+ E   +G L+ +E+  L
Sbjct:  214 VEAKAGGGSATLSMGQAAARFGLSLVRALQGESGVVECAYVESDGKHARFFAQPVLLGKDGVVERKDIGTLSAFEQNAL 292          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_AERHH (Malate dehydrogenase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=mdh PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.241e-13
Identity = 36/80 (45.00%), Postives = 51/80 (63.75%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 241
            VEAK G GSATLSM  AA +F  + ++GL+G+A VIECAYV        FFA  + LG+ G+E +   G L+ +E+  ++
Sbjct:  214 VEAKAGGGSATLSMGQAACRFGLSLIKGLQGEANVIECAYVEGDGKHATFFAQPILLGKNGVETVLDYGKLSAFEQEAMD 293          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_SALTY (Malate dehydrogenase OS=Salmonella typhimurium GN=mdh PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.927e-13
Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 241
            VEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  L+
Sbjct:  214 VEAKAGGGSATLSMGQAAARFGLSLVRALQGEKGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQHSLD 293          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_SALTI (Malate dehydrogenase OS=Salmonella typhi GN=mdh PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.927e-13
Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 241
            VEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  L+
Sbjct:  214 VEAKAGGGSATLSMGQAAARFGLSLVRALQGEKGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSTFEQHSLD 293          
The following BLAST results are available for this feature:
BLAST of FC871221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
MDHM_PIG1.578e-1345.33Malate dehydrogenase, mitochondrial OS=Sus scrofa ... [more]
MDH_PROMH1.716e-1348.10Malate dehydrogenase OS=Proteus mirabilis (strain ... [more]
MDH_KLEP71.716e-1347.50Malate dehydrogenase OS=Klebsiella pneumoniae subs... [more]
MDH_KLEP31.716e-1347.50Malate dehydrogenase OS=Klebsiella pneumoniae (str... [more]
MDHM_BOVIN2.050e-1345.33Malate dehydrogenase, mitochondrial OS=Bos taurus ... [more]
MDH_SHEPA2.241e-1349.33Malate dehydrogenase OS=Shewanella pealeana (strai... [more]
MDH_PECCP2.241e-1349.37Malate dehydrogenase OS=Pectobacterium carotovorum... [more]
MDH_AERHH2.241e-1345.00Malate dehydrogenase OS=Aeromonas hydrophila subsp... [more]
MDH_SALTY2.927e-1347.50Malate dehydrogenase OS=Salmonella typhimurium GN=... [more]
MDH_SALTI2.927e-1347.50Malate dehydrogenase OS=Salmonella typhi GN=mdh PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2AG05FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2AG05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871221 ID=FC871221; Name=FC871221; organism=Citrus sinensis; type=EST; length=592bp
AGTTGAGGCAAAAACTGGAGCTGGTTCGGCCACTCTATCGATGGCATATG
CTGCTGCCAAGTTTGCCGATGCTTGTCTCCGAGGCTTGAGGGGGGATGCC
GGTGTTATTGAGTGTGCATACGTGGCTTCTACGGTGACTGAACTCCCTTT
CTTTGCATCCAAGGTACGGCTTGGCCGTGCTGGAATTGAGGAAATTTACT
CACTTGGCCCATTGAATGAGTATGAGAGGGCTGGTTTGGAAAGGCAAAGA
AAGAGTTAGCGGGAAGCATTCAGAAGGGAGTCAGTTTTGTCAGGAAATGA
GTAACCAATCACATGGTGACTAATGATAATGGTTGTGCTTTTGTTGTTTG
CCTCAAATATCTCAAGATTACTTTCCCCAGAATAAGAGGTAGGGTTTTCG
TTTTTCCATAATCAGATTGAATTAAGTTAGTTACAAAGAAGAAGCAAAAG
ATTCATCTTAGTGGGGTTGGTTTGGTTCTTTTGATATTCTTGTAATGAAG
GGATAAAGAATATGTAGATGACGAACTGCCGCCTGTTTTATCATTTTAAT
CAATTCAAAATCAGAGTTCATACTAAAAAAAAAAAAAAAAAA
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