FC871221

Overview
NameFC871221
Unique NameFC871221
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_SALCH (Malate dehydrogenase OS=Salmonella choleraesuis GN=mdh PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.927e-13
Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 241
            VEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  L+
Sbjct:  214 VEAKAGGGSATLSMGQAAARFGLSLVRALQGEKGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQHSLD 293          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_SALA4 (Malate dehydrogenase OS=Salmonella agona (strain SL483) GN=mdh PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.927e-13
Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 241
            VEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  L+
Sbjct:  214 VEAKAGGGSATLSMGQAAARFGLSLVRALQGEKGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQHSLD 293          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_PHOPR (Malate dehydrogenase OS=Photobacterium profundum GN=mdh PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.927e-13
Identity = 37/79 (46.84%), Postives = 50/79 (63.29%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL 238
            VEAK G GSATLSM  AA +F  + +R L+G+ G++ECAYV        FFA  V LG+ G+EE+   G L+ +E+  L
Sbjct:  214 VEAKAGGGSATLSMGQAAYRFGLSLVRALQGEQGIVECAYVEGDGKHARFFAQPVLLGKDGVEEVIDYGKLSTFEQEAL 292          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_SHEHH (Malate dehydrogenase OS=Shewanella halifaxensis (strain HAW-EB4) GN=mdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.823e-13
Identity = 37/75 (49.33%), Postives = 50/75 (66.67%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYE 226
            VEAK G GSATLSM  AA +F  + +RGL+G+A V+ECAYV        FFA  V LG+ GIE++ + G ++ +E
Sbjct:  214 VEAKAGGGSATLSMGQAACRFGLSLVRGLQGEANVVECAYVDGGSEHTEFFAQPVVLGKNGIEQVLAYGEVSAFE 288          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_SERP5 (Malate dehydrogenase OS=Serratia proteamaculans (strain 568) GN=mdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.823e-13
Identity = 38/80 (47.50%), Postives = 52/80 (65.00%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 241
            VEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FFA  + LG+ G+EE   +G L+ +E+  L+
Sbjct:  214 VEAKAGGGSATLSMGQAAARFGLSLVRALQGEKGVVECAYVEGDGKYARFFAQPLVLGKNGVEERKDIGTLSAFEQKALD 293          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_EDWI9 (Malate dehydrogenase OS=Edwardsiella ictaluri (strain 93-146) GN=mdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.823e-13
Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 241
            VEAK G GSATL+M  AAA+FA + +R ++GD  V+EC YV S      FFA  + LG+AG+ +  S+G L+ +E+  LE
Sbjct:  214 VEAKAGGGSATLAMGQAAARFALSLVRAMQGDENVVECGYVESDGEYARFFAQPLLLGKAGLVQRLSIGTLSAFEQDALE 293          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_ALISL (Malate dehydrogenase OS=Aliivibrio salmonicida (strain LFI1238) GN=mdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.823e-13
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 241
            VEAK G GSATLSM  AA +F  + ++ L G+ GV+ECAYV        FFA  + LG+ G+EEI   G L+ +E+  L+
Sbjct:  214 VEAKAGGGSATLSMGQAACRFGLSLVKALSGEKGVVECAYVEGNGEHARFFAQPILLGKNGVEEIQHYGELSTFEQDALD 293          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_SHESW (Malate dehydrogenase OS=Shewanella sp. (strain W3-18-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.993e-13
Identity = 37/75 (49.33%), Postives = 49/75 (65.33%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYE 226
            VEAK G GSATLSM  AA +F  + +RGL+G+A V+ECAYV        FFA  V LG+ GIE++   G ++ +E
Sbjct:  214 VEAKAGGGSATLSMGQAACRFGMSLVRGLQGEANVVECAYVDGGSEHAEFFAQPVLLGKNGIEKVLPYGEVSAFE 288          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_SHESH (Malate dehydrogenase OS=Shewanella sediminis (strain HAW-EB3) GN=mdh PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.993e-13
Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYE 226
            VEAK G GSATLSM  AA +F  + +RGL+G+  VIECAYV        FFA  + LG+ G+E + + G ++E+E
Sbjct:  214 VEAKAGGGSATLSMGQAACRFGLSLVRGLQGEENVIECAYVDGGSEHADFFAQPILLGKNGVESVLAYGEVSEFE 288          
BLAST of FC871221 vs. ExPASy Swiss-Prot
Match: MDH_SHEPW (Malate dehydrogenase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=mdh PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.993e-13
Identity = 36/75 (48.00%), Postives = 50/75 (66.67%), Query Frame = 2
Query:    2 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYE 226
            VEAK G GSATLSM  AA +F  + +RGL+G+A V+ECAYV        FFA  V LG+ G+E++ + G ++ +E
Sbjct:  214 VEAKAGGGSATLSMGQAACRFGLSLVRGLQGEANVVECAYVDGGSEHAEFFAQPVVLGKNGVEQVLAYGDVSAFE 288          
The following BLAST results are available for this feature:
BLAST of FC871221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
MDH_SALCH2.927e-1347.50Malate dehydrogenase OS=Salmonella choleraesuis GN... [more]
MDH_SALA42.927e-1347.50Malate dehydrogenase OS=Salmonella agona (strain S... [more]
MDH_PHOPR2.927e-1346.84Malate dehydrogenase OS=Photobacterium profundum G... [more]
MDH_SHEHH3.823e-1349.33Malate dehydrogenase OS=Shewanella halifaxensis (s... [more]
MDH_SERP53.823e-1347.50Malate dehydrogenase OS=Serratia proteamaculans (s... [more]
MDH_EDWI93.823e-1347.50Malate dehydrogenase OS=Edwardsiella ictaluri (str... [more]
MDH_ALISL3.823e-1346.25Malate dehydrogenase OS=Aliivibrio salmonicida (st... [more]
MDH_SHESW4.993e-1349.33Malate dehydrogenase OS=Shewanella sp. (strain W3-... [more]
MDH_SHESH4.993e-1348.00Malate dehydrogenase OS=Shewanella sediminis (stra... [more]
MDH_SHEPW4.993e-1348.00Malate dehydrogenase OS=Shewanella piezotolerans (... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2AG05FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2AG05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871221 ID=FC871221; Name=FC871221; organism=Citrus sinensis; type=EST; length=592bp
AGTTGAGGCAAAAACTGGAGCTGGTTCGGCCACTCTATCGATGGCATATG
CTGCTGCCAAGTTTGCCGATGCTTGTCTCCGAGGCTTGAGGGGGGATGCC
GGTGTTATTGAGTGTGCATACGTGGCTTCTACGGTGACTGAACTCCCTTT
CTTTGCATCCAAGGTACGGCTTGGCCGTGCTGGAATTGAGGAAATTTACT
CACTTGGCCCATTGAATGAGTATGAGAGGGCTGGTTTGGAAAGGCAAAGA
AAGAGTTAGCGGGAAGCATTCAGAAGGGAGTCAGTTTTGTCAGGAAATGA
GTAACCAATCACATGGTGACTAATGATAATGGTTGTGCTTTTGTTGTTTG
CCTCAAATATCTCAAGATTACTTTCCCCAGAATAAGAGGTAGGGTTTTCG
TTTTTCCATAATCAGATTGAATTAAGTTAGTTACAAAGAAGAAGCAAAAG
ATTCATCTTAGTGGGGTTGGTTTGGTTCTTTTGATATTCTTGTAATGAAG
GGATAAAGAATATGTAGATGACGAACTGCCGCCTGTTTTATCATTTTAAT
CAATTCAAAATCAGAGTTCATACTAAAAAAAAAAAAAAAAAA
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