EY676899

Overview
NameEY676899
Unique NameEY676899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length983
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_CHLT2 (tRNA modification GTPase mnmE OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=mnmE PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.450e-18
Identity = 54/158 (34.18%), Postives = 79/158 (50.00%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P+  T ED+VE QCHG      +++ A L  GA  A PGEF+ RAFLNG++DL QAE +++LI+              QG  S  ++S+ +  IE L  IE   DF +E      +L   +I       +  + + +  + L  G  I + G PN GK
Sbjct:   72 PRSFTGEDIVEFQCHGGYFACSQIVNALLAEGARAALPGEFSQRAFLNGKIDLIQAEAIQQLIAADNIDAFRIAQNQFQGHTSQAISSISSLIIEALAYIEVLADFPEEDIETEDSLPKHRIMEALSITDELLSSFDEGQRLAQGTSIVLAGLPNAGK 229          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_SHEFN (tRNA modification GTPase mnmE OS=Shewanella frigidimarina (strain NCIMB 400) GN=mnmE PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.894e-18
Identity = 52/161 (32.30%), Postives = 89/161 (55.28%), Query Frame = 3
Query:   15 GPKILTREDVVELQCHGPEVCLRRVLRACLEA-GATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            GP   T EDV+ELQ HG ++ L  +++  +E  G  +A+PGEF+ +AF+N +LDL+QAE +  LI              +QG FS  V  +  +   L   +EA +DF D+E+  L+   + + ++ +   ++    +A    +++ G+++ I GRPN GK
Sbjct:   68 GPNSFTGEDVLELQGHGGQIVLDMLIKRVMEIDGIRIARPGEFSEQAFMNDKLDLTQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPDEEVDFLSDGKIANALYKIISKLDTVQASAKQGSIIREGMKVVIAGRPNAGK 228          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_IDILO (tRNA modification GTPase mnmE OS=Idiomarina loihiensis GN=mnmE PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.894e-18
Identity = 59/161 (36.65%), Postives = 86/161 (53.42%), Query Frame = 3
Query:   15 GPKILTREDVVELQCHGPEVCLRRVLRACLEA-GATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            GP   T EDV+ELQ HG  V +  ++RA LE  G   A+PGEF+ RAFLN +LDL+QAE +  LI              ++G FS  +  +    I L   +EA +DF D+E+  L+   V   +  +   + +  + A    L++ G++I I GRPN GK
Sbjct:   73 GPNSFTGEDVLELQGHGGPVIIDMIIRAILEIPGIRPARPGEFSERAFLNDKLDLTQAEAIADLIDTNSEQAAKAALQSLKGEFSHKIDQLVDAVIHLRIYVEAAIDFPDEEIDFLSDGKVSGDLAEIIDQLFHIEQEAKQGTLMREGMRIVIAGRPNAGK 233          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_BURS3 (tRNA modification GTPase mnmE OS=Burkholderia sp. (strain 383) GN=mnmE PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.894e-18
Identity = 59/163 (36.20%), Postives = 86/163 (52.76%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGA----TLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P   T E V+ELQ HG  + ++ +L+ CL+AG      LA+PGEFT RAFLN +LDL+QAE V  LI              + G FS  + ++    I L   +EA LDF ++E+  L       K+  +   + + +  A    LL+ GL + + G+PNVGK
Sbjct:   77 PHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEPGEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVITLRMLVEATLDFPEEEIDFLEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNVGK 239          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_BURCH (tRNA modification GTPase mnmE OS=Burkholderia cenocepacia (strain HI2424) GN=mnmE PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.894e-18
Identity = 59/163 (36.20%), Postives = 86/163 (52.76%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGA----TLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P   T E V+ELQ HG  + ++ +L+ CL+AG      LA+PGEFT RAFLN +LDL+QAE V  LI              + G FS  + ++    I L   +EA LDF ++E+  L       K+  +   + + +  A    LL+ GL + + G+PNVGK
Sbjct:   77 PHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEPGEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVITLRMLVEATLDFPEEEIDFLEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNVGK 239          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_BURCC (tRNA modification GTPase mnmE OS=Burkholderia cenocepacia (strain MC0-3) GN=mnmE PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.894e-18
Identity = 59/163 (36.20%), Postives = 86/163 (52.76%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGA----TLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P   T E V+ELQ HG  + ++ +L+ CL+AG      LA+PGEFT RAFLN +LDL+QAE V  LI              + G FS  + ++    I L   +EA LDF ++E+  L       K+  +   + + +  A    LL+ GL + + G+PNVGK
Sbjct:   77 PHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEPGEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVITLRMLVEATLDFPEEEIDFLEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNVGK 239          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_BURCA (tRNA modification GTPase mnmE OS=Burkholderia cenocepacia (strain AU 1054) GN=mnmE PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.894e-18
Identity = 59/163 (36.20%), Postives = 86/163 (52.76%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGA----TLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P   T E V+ELQ HG  + ++ +L+ CL+AG      LA+PGEFT RAFLN +LDL+QAE V  LI              + G FS  + ++    I L   +EA LDF ++E+  L       K+  +   + + +  A    LL+ GL + + G+PNVGK
Sbjct:   77 PHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEPGEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVITLRMLVEATLDFPEEEIDFLEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNVGK 239          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_SHESA (tRNA modification GTPase mnmE OS=Shewanella sp. (strain ANA-3) GN=mnmE PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.473e-18
Identity = 53/161 (32.92%), Postives = 88/161 (54.66%), Query Frame = 3
Query:   15 GPKILTREDVVELQCHGPEVCLRRVLRACLEA-GATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            GP   T EDV+ELQ HG ++ L  +++  LE  G  +A+PGEF+ +AF+N +LDL+QAE +  LI              +QG FS  V  +  +   L   +EA +DF D+E+  L+   + + ++ +   +     +A    +++ G+++ I GRPN GK
Sbjct:   68 GPNSFTGEDVLELQGHGGQIVLDMLIKRVLEVEGIRIAKPGEFSEQAFMNDKLDLTQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTHLRLYVEAAIDFPDEEVDFLSDGKIANALYKIIDKLSAVQASAKQGSIIREGMKVVIAGRPNAGK 228          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_SHEB9 (tRNA modification GTPase mnmE OS=Shewanella baltica (strain OS195) GN=mnmE PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.473e-18
Identity = 52/161 (32.30%), Postives = 89/161 (55.28%), Query Frame = 3
Query:   15 GPKILTREDVVELQCHGPEVCLRRVLRACLEAGAT-LAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            GP   T EDV+ELQ HG ++ L  +++  +E G   +A+PGEF+ +AF+N +LDL+QAE +  LI              +QG FS  V  +  +   L   +EA +DF D+E+  L+   + + ++ +   ++    +A    +++ G+++ I GRPN GK
Sbjct:   68 GPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVGGIRIAKPGEFSEQAFMNDKLDLTQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPDEEVDFLSDGKIANALYKIIDKLDLVQASAKQGSIIREGMKVVIAGRPNAGK 228          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_SHEB8 (tRNA modification GTPase mnmE OS=Shewanella baltica (strain OS185) GN=mnmE PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.473e-18
Identity = 52/161 (32.30%), Postives = 89/161 (55.28%), Query Frame = 3
Query:   15 GPKILTREDVVELQCHGPEVCLRRVLRACLEAGAT-LAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            GP   T EDV+ELQ HG ++ L  +++  +E G   +A+PGEF+ +AF+N +LDL+QAE +  LI              +QG FS  V  +  +   L   +EA +DF D+E+  L+   + + ++ +   ++    +A    +++ G+++ I GRPN GK
Sbjct:   68 GPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVGGIRIAKPGEFSEQAFMNDKLDLTQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPDEEVDFLSDGKIANALYKIIDKLDLVQASAKQGSIIREGMKVVIAGRPNAGK 228          
The following BLAST results are available for this feature:
BLAST of EY676899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MNME_CHLT21.450e-1834.18tRNA modification GTPase mnmE OS=Chlamydia trachom... [more]
MNME_SHEFN1.894e-1832.30tRNA modification GTPase mnmE OS=Shewanella frigid... [more]
MNME_IDILO1.894e-1836.65tRNA modification GTPase mnmE OS=Idiomarina loihie... [more]
MNME_BURS31.894e-1836.20tRNA modification GTPase mnmE OS=Burkholderia sp. ... [more]
MNME_BURCH1.894e-1836.20tRNA modification GTPase mnmE OS=Burkholderia ceno... [more]
MNME_BURCC1.894e-1836.20tRNA modification GTPase mnmE OS=Burkholderia ceno... [more]
MNME_BURCA1.894e-1836.20tRNA modification GTPase mnmE OS=Burkholderia ceno... [more]
MNME_SHESA2.473e-1832.92tRNA modification GTPase mnmE OS=Shewanella sp. (s... [more]
MNME_SHEB92.473e-1832.30tRNA modification GTPase mnmE OS=Shewanella baltic... [more]
MNME_SHEB82.473e-1832.30tRNA modification GTPase mnmE OS=Shewanella baltic... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-028-D03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676899 ID=EY676899; Name=EY676899; organism=Citrus sinensis; type=EST; length=983bp
CCACGCGTCCGGTTGGCCCCAAGATCCTCACCCGTGAAGATGTGGTTGAG
CTTCAATGTCACGGCCCTGAAGTGTGTCTGCGCCGTGTGTTAAGAGCTTG
TTTAGAAGCTGGGGCGACCCTTGCTCAACCAGGCGAGTTCACTCTCCGCG
CCTTTCTCAATGGCCGCTTAGACCTATCTCAAGCTGAAAATGTTGAAAAG
TTAATTTCAGCAAAGTCTGTGGCTGCTGCAGATGCAGCTTTGGCAGGAAT
TCAGGGGGGCTTCTCTTCTTTGGTCACGTCAGTGAGAGCGAAGTGCATCG
AGTTGCTTACTGAGATTGAGGCTCGTTTAGATTTTGATGATGAGATGCCT
CCTCTCAATTTAAATCTGGTTATGGATAAAATACACGCAATGTCACAAGA
TGTGGAAAATGCCATGGAGACTGCCAATTATGACAAACTTCTGCAATCTG
GCTTACAAATAGCAATTGGCGGGCGACCAAATGTTGGGAAGTCTAGCCTT
CTTAATGCTTTGGAGCAAAATTGAGAGAACAATAGTTTACAAGAAAATTG
CCGGTACTACTCAAAAATGTCGTTGAAACCAATGGAAACATTATGTGGGT
GGACCTGGGGAAACTTCCTTGAAACCGCAGGGCTTAAAAAAAACTGAAAA
AAATTTGGGGAAAAAAATTGGTGGGGAAAAAGATCTGAAAACAATAACCT
TGGGGGGGGGGAGAGTTATATAAATAGAAAAAGGAGGGGGCAACTTAGAT
GGGTGGAATCTTTCAAAAAAAAAACACCAAACCTCTTATTAAAAAAATTA
CAATGCCCAAATAAAAAAAAGCTCCGCGGGGGACTCTCTCACCCCCCCCG
AGGAGTATTTCATGTGAAAATCAAGCAAAAAAAAGAAGAAGGGGGGCACC
CCCCATCATCACTAAACAACAAAGAAAAGGGGAGAAAAAAAAAGACACGC
GGAGCCAAATAAATTTTTCCGCACGAACAGAGA
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