EY676899

Overview
NameEY676899
Unique NameEY676899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length983
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_GEOKA (tRNA modification GTPase mnmE OS=Geobacillus kaustophilus GN=mnmE PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.972e-27
Identity = 68/160 (42.50%), Postives = 91/160 (56.88%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            PK  TREDVVE+ CHG  V + RVL+  L  GA LA+PGEFT RAFLNGR+DLSQAE V  LI              ++G  S L+  +R   +E L  +E  +D+   D++  +   L+ +K   +   +E  + TA   K+L+ GL   I GRPNVGK
Sbjct:   78 PKTFTREDVVEINCHGGFVSVNRVLQLVLANGARLAEPGEFTKRAFLNGRIDLSQAEAVIDLIRAKTDRAMNVALQQMEGRLSKLIRELRQTILETLAHVEVNIDYPEYDDVEEMTPRLLREKAEYVRGQIEKLLSTAAQGKILREGLATVIIGRPNVGK 237          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_BACSK (tRNA modification GTPase mnmE OS=Bacillus clausii (strain KSM-K16) GN=mnmE PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.972e-27
Identity = 66/159 (41.51%), Postives = 93/159 (58.49%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFDD-EMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P+  TRED+VE+ CHG  V + RVL+A L  GA LA+PGEFT RAFLNGR+DLSQAE V  LI              ++G  S  +  +R   +E +  IE  +D+ + +   +   L+ +K+  +  ++E  + TA   K+L+ GL  AI GRPNVGK
Sbjct:   75 PRTYTREDIVEINCHGGLVSVNRVLQAVLAKGARLAEPGEFTKRAFLNGRIDLSQAEGVIDLIRSKTDRAMNVALRQVEGRLSKKIGKLRQALLETIASIEVNIDYPEYDAETMTAKLINEKMTIVLAEIEALLATAKQGKVLREGLATAIIGRPNVGK 233          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_BACCR (tRNA modification GTPase mnmE OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=mnmE PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 6.494e-27
Identity = 63/160 (39.38%), Postives = 96/160 (60.00%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P+  TRE++VE+ CHG  V + +VL+  L  G  LA+PGEFT RAFLNGR+DLSQAE V  LI              ++G  S L+  +R + +E L  +E  +D+   D++  +  N++++K   +  ++E  +ET+   K+L+ G+  AI GRPNVGK
Sbjct:   74 PRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAEPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGLLRQEILETLAHVEVNIDYPEYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPNVGK 233          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_LACSS (tRNA modification GTPase mnmE OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=mnmE PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 8.481e-27
Identity = 60/159 (37.74%), Postives = 95/159 (59.75%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFDD-EMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            PK  TREDV+E+ CHG  V   R+L+  +  GA +A+PGEFT RAFLNGR+DL+QAE+V  LI              + G  + L+ ++R + +E+L ++E  +D+ + +   +   ++++K   +   +   ++TA   K+L+ GL  AI GRPNVGK
Sbjct:   79 PKTFTREDVIEINCHGGIVATNRILQLLMSYGARMAEPGEFTKRAFLNGRIDLTQAESVMDLIRAKTDRAMQVAVDQLDGSLTHLIKNLRQEILEVLAQVEVNIDYPEYDTDEMTTRILLEKAELVKGRIGELLQTAQQGKVLREGLATAIVGRPNVGK 237          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_LACPL (tRNA modification GTPase mnmE OS=Lactobacillus plantarum GN=mnmE PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 8.481e-27
Identity = 65/160 (40.62%), Postives = 91/160 (56.88%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            PK  TREDVVE+ CHG  V    +L+  L  GA +A+PGEFT RAFLNGRLDLSQAE V  LI              + G  S L+  +R   +++L ++E  +D+   D +  +   ++ +K   ++Q +   + TA   K+L+ GL  AI GRPNVGK
Sbjct:   78 PKTYTREDVVEINCHGGLVATNEILQLILSHGARMAEPGEFTKRAFLNGRLDLSQAEAVMDLIRAKTDKSMKVALNQLDGDLSKLIRHLRQDILDVLAQVEVNIDYPEYDAVETMTTKMLKEKATEVAQSINQLLATAKQGKVLREGLATAIIGRPNVGK 237          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_LACLS (tRNA modification GTPase mnmE OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=mnmE PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 8.481e-27
Identity = 63/160 (39.38%), Postives = 94/160 (58.75%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            PK  TRED+VE+  HG     + +L+  L  GA LA+PGEFT RAFLNGR+DL+QAE+V  LI              + G  S ++ ++R   +E L ++E  +D+   D++  +   ++++K     Q +EN + TA   K+L+ GL+ AI GRPNVGK
Sbjct:   76 PKTFTREDIVEINTHGGIAVTQEILQLLLRNGARLAEPGEFTKRAFLNGRIDLAQAESVMDLIRAKTDKAANIAVKQLDGSLSKMINNIRQDILESLAQVEVNIDYPEYDDVETMTSQMLLEKTAHFEQLLENLLSTAKRGKILREGLKTAIIGRPNVGK 235          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_CLOTH (tRNA modification GTPase mnmE OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=mnmE PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 8.481e-27
Identity = 63/159 (39.62%), Postives = 97/159 (61.01%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            PK  TREDVVE+ CHG  V L+ +L  C++ GA LA+PGEFT RAFLNGR+DLSQAE V  LI+             ++G  S  +   R+K IELL  IE  +D+ + ++  +  N+V ++I  + + + + +++    ++++ G+   I G+PNVGK
Sbjct:   76 PKTFTREDVVEINCHGGMVVLKNILELCIKEGARLAEPGEFTKRAFLNGRIDLSQAEAVIDLINSKTNESSKAAISQLEGKLSRKIKDARSKLIELLAHIEVTVDYPEHDIEEITGNMVYEEIGKIKEKLCDIVKSFERGRIIREGIDAVIIGKPNVGK 234          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_OCEIH (tRNA modification GTPase mnmE OS=Oceanobacillus iheyensis GN=mnmE PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.889e-26
Identity = 64/161 (39.75%), Postives = 93/161 (57.76%), Query Frame = 3
Query:   15 GPKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            GPK  TREDVVE+ CHG  V + RVL   L  G  LA+PGEFT RAFL+GR+DLSQAE V  LI              + G  S L+  +R + +E +  +E  +D+   D++  ++  ++ +K   +  +++  ++ A   K+L+ GL  AI GRPNVGK
Sbjct:   74 GPKTFTREDVVEINCHGGMVAVNRVLEIVLAKGVRLAEPGEFTKRAFLHGRIDLSQAEAVMDLIRAKTDKAMSVALKQMDGRLSKLIQKLRQELLETVAHVEVNIDYPEYDDVEEMSHAMMKEKSKEVRDELDKLLQIAQQGKILREGLSTAIIGRPNVGK 234          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_BACWK (tRNA modification GTPase mnmE OS=Bacillus weihenstephanensis (strain KBAB4) GN=mnmE PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.889e-26
Identity = 63/160 (39.38%), Postives = 95/160 (59.38%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P+  TRE++VE+ CHG  V + +VL+  L  G  LA+PGEFT RAFLNGR+DLSQAE V  LI              ++G  S L+  +R + +E L  IE  +D+   D++  +  N++++K   +  ++   +ET+   K+L+ G+  AI GRPNVGK
Sbjct:   74 PRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAEPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGHLRQEILETLAHIEVNIDYPEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGISTAIIGRPNVGK 233          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_SYNR3 (tRNA modification GTPase mnmE OS=Synechococcus sp. (strain RCC307) GN=mnmE PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.468e-26
Identity = 63/158 (39.87%), Postives = 96/158 (60.76%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P+  TRE VVE   HG  V ++R+L   L AGA  A PGEF+ RAFLNGRLDL++AE + +L+S            G+ GG    + ++R + ++ L E+EAR+DF++++P L+   V   +  + Q ++  +      +LL+ GL++AI GRPNVGK
Sbjct:   80 PRSFTRETVVEFHGHGGLVAVQRLLELVLAAGARRALPGEFSQRAFLNGRLDLTRAEAISELVSARSRRAAELAMAGLDGGLQQRIEALRDQLLDQLCELEARVDFEEDLPSLDGAAVCTALRDVQQALDQLVLDGQQAQLLRDGLRVAIIGRPNVGK 237          
The following BLAST results are available for this feature:
BLAST of EY676899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MNME_GEOKA4.972e-2742.50tRNA modification GTPase mnmE OS=Geobacillus kaust... [more]
MNME_BACSK4.972e-2741.51tRNA modification GTPase mnmE OS=Bacillus clausii ... [more]
MNME_BACCR6.494e-2739.38tRNA modification GTPase mnmE OS=Bacillus cereus (... [more]
MNME_LACSS8.481e-2737.74tRNA modification GTPase mnmE OS=Lactobacillus sak... [more]
MNME_LACPL8.481e-2740.63tRNA modification GTPase mnmE OS=Lactobacillus pla... [more]
MNME_LACLS8.481e-2739.38tRNA modification GTPase mnmE OS=Lactococcus lacti... [more]
MNME_CLOTH8.481e-2739.62tRNA modification GTPase mnmE OS=Clostridium therm... [more]
MNME_OCEIH1.889e-2639.75tRNA modification GTPase mnmE OS=Oceanobacillus ih... [more]
MNME_BACWK1.889e-2639.38tRNA modification GTPase mnmE OS=Bacillus weihenst... [more]
MNME_SYNR32.468e-2639.87tRNA modification GTPase mnmE OS=Synechococcus sp.... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-028-D03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676899 ID=EY676899; Name=EY676899; organism=Citrus sinensis; type=EST; length=983bp
CCACGCGTCCGGTTGGCCCCAAGATCCTCACCCGTGAAGATGTGGTTGAG
CTTCAATGTCACGGCCCTGAAGTGTGTCTGCGCCGTGTGTTAAGAGCTTG
TTTAGAAGCTGGGGCGACCCTTGCTCAACCAGGCGAGTTCACTCTCCGCG
CCTTTCTCAATGGCCGCTTAGACCTATCTCAAGCTGAAAATGTTGAAAAG
TTAATTTCAGCAAAGTCTGTGGCTGCTGCAGATGCAGCTTTGGCAGGAAT
TCAGGGGGGCTTCTCTTCTTTGGTCACGTCAGTGAGAGCGAAGTGCATCG
AGTTGCTTACTGAGATTGAGGCTCGTTTAGATTTTGATGATGAGATGCCT
CCTCTCAATTTAAATCTGGTTATGGATAAAATACACGCAATGTCACAAGA
TGTGGAAAATGCCATGGAGACTGCCAATTATGACAAACTTCTGCAATCTG
GCTTACAAATAGCAATTGGCGGGCGACCAAATGTTGGGAAGTCTAGCCTT
CTTAATGCTTTGGAGCAAAATTGAGAGAACAATAGTTTACAAGAAAATTG
CCGGTACTACTCAAAAATGTCGTTGAAACCAATGGAAACATTATGTGGGT
GGACCTGGGGAAACTTCCTTGAAACCGCAGGGCTTAAAAAAAACTGAAAA
AAATTTGGGGAAAAAAATTGGTGGGGAAAAAGATCTGAAAACAATAACCT
TGGGGGGGGGGAGAGTTATATAAATAGAAAAAGGAGGGGGCAACTTAGAT
GGGTGGAATCTTTCAAAAAAAAAACACCAAACCTCTTATTAAAAAAATTA
CAATGCCCAAATAAAAAAAAGCTCCGCGGGGGACTCTCTCACCCCCCCCG
AGGAGTATTTCATGTGAAAATCAAGCAAAAAAAAGAAGAAGGGGGGCACC
CCCCATCATCACTAAACAACAAAGAAAAGGGGAGAAAAAAAAAGACACGC
GGAGCCAAATAAATTTTTCCGCACGAACAGAGA
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