EY676899

Overview
NameEY676899
Unique NameEY676899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length983
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_VIBHB (tRNA modification GTPase mnmE OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=mnmE PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.603e-17
Identity = 54/160 (33.75%), Postives = 86/160 (53.75%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEA-GATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P   T EDV+ELQ HG  V +  +++  L   G   A+PGEF+ RAFLN ++DL+QAE +  LI              +QG FS  + ++    I L   +EA +DF ++E+  L    V   + A+  +++   + AN   +++ G+++ I GRPN GK
Sbjct:   69 PHSFTGEDVLELQGHGGPVVMDMLIKRILGIDGVRAARPGEFSERAFLNDKMDLTQAEAIADLIDASSEEAAKSALQSLQGQFSQRIQTLVESLIHLRIYVEAAIDFPEEEIDFLADGKVSGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGK 228          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_ROSS1 (tRNA modification GTPase mnmE OS=Roseiflexus sp. (strain RS-1) GN=mnmE PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.603e-17
Identity = 55/160 (34.38%), Postives = 85/160 (53.12%), Query Frame = 3
Query:   15 GPKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            GP+  T ED  E+  HG  + + RVL+  L AGA  A PGEFT+RAFLNGR+DL+QAE    +I+             + G  S  +  +R   ++ L    A +DF +DE+ P ++      + A  Q ++  + +A +  + + G + A+ GRPN GK
Sbjct:   73 GPRSFTAEDTAEISVHGGPLVVERVLQQALAAGARAAAPGEFTMRAFLNGRIDLAQAEATLDIITARTTTALALAEAQLGGWLSQELHRIRDLLMDPLAYCTALVDFPEDEVDPQDIE---TPLTAAVQALDALVASAQHGIIYRQGARAALIGRPNAGK 229          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_PARDP (tRNA modification GTPase mnmE OS=Paracoccus denitrificans (strain Pd 1222) GN=mnmE PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.603e-17
Identity = 55/155 (35.48%), Postives = 80/155 (51.61%), Query Frame = 3
Query:   30 TREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            T E+V EL  HG  V   R+ +A L  G   A+ GEFT RAFLNGR+DL++AE +  L+S              +G        +R+K I     IEA +DF D+E+P       +D I A+  D++  + +    + L+ G ++AI G PN GK
Sbjct:   70 TGEEVAELHLHGAPVIASRLSQALLARGLRRAEAGEFTKRAFLNGRIDLAEAEGLADLLSAETEAQRKLAMRATEGELGRKADELRSKLIRAGALIEASIDFADEEVPDEVPEEALDLIKAVRSDIQGMLASYPATERLRQGYEVAIIGPPNAGK 224          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_CAUSK (tRNA modification GTPase mnmE OS=Caulobacter sp. (strain K31) GN=mnmE PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.603e-17
Identity = 55/160 (34.38%), Postives = 78/160 (48.75%), Query Frame = 3
Query:   15 GPKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            GP   T ED  E   HG    +  VL A    G  LA+PGEFT RAF NG+LDL+QAE V  LI              + G  S    + R   ++ L  +EA +DF D+E+P          + A+  ++  A+  A+  + ++ G +IA+ G PN GK
Sbjct:   66 GPASYTGEDAAEFHVHGGRAVVEAVLEALAAEGLRLAEPGEFTRRAFENGKLDLTQAEGVADLIDAETEAQRRQALGQLGGALSQRYEAWRGLLVQALAMLEAAVDFPDEELPEDVAARARPGLEALEAEIGAALVDASRGRRVRDGYRIALVGAPNAGK 225          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_BUCMP (tRNA modification GTPase mnmE OS=Buchnera aphidicola subsp. Myzus persicae GN=mnmE PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.603e-17
Identity = 54/160 (33.75%), Postives = 86/160 (53.75%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEA-GATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNL-NLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P   T EDV+ELQ HG  + +  +++         +A+PGEF+ RAFLNG++DL QAE ++ LI+             +QG FSS +  + +  IE  T IE+ +DF +E   ++L +L+  K+  + +      +  +   LL+ G +I I G PN GK
Sbjct:   70 PFSFTGEDVLELQGHGSPLIMDLLIKRITSIENVRMAKPGEFSERAFLNGKIDLIQAEAIDDLINSETESSIRASLHSLQGDFSSHIKQLISTVIEFRTNIESSIDFSEEEIDIDLKSLIYIKLKELEEKFIKTKKVISEGSLLKEGKKIVIAGPPNAGK 229          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_WOLPP (tRNA modification GTPase mnmE OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=mnmE PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.094e-17
Identity = 53/160 (33.12%), Postives = 85/160 (53.12%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEM--PPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P   T EDV+ELQ HG +  ++ +L   L     +A+PGEF+LRAFLNG+ DL+Q E +  LI              I G    L ++ R + I + ++IEA +DF +++      L  + +++ ++ Q ++  +      + L+ GL I I G PNVGK
Sbjct:   72 PNSFTGEDVIELQVHGSKAVIKIILEK-LSKIFVMARPGEFSLRAFLNGKFDLTQIEGIADLIDAETKMQAKQAIKQISGELERLYSNWRQRLITIQSKIEAYIDFPEDIWAEKSELEKINNEVQSLVQLIQEHLNDNRRGERLREGLHIVITGEPNVGK 230          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_HELAH (tRNA modification GTPase mnmE OS=Helicobacter acinonychis (strain Sheeba) GN=mnmE PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.094e-17
Identity = 52/159 (32.70%), Postives = 81/159 (50.94%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDE-MPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P   T EDV E+QCHG  +  + +L+ACL  GA LAQ GEF+ +AFLN ++DLS+ E   +LI              ++G     +   R   ++LL   E  +D+ +E +P   LN V   +       ++ ++ +N  K    G  ++I G+PN GK
Sbjct:   68 PYSFTGEDVCEIQCHGSPLLTQNILQACLNLGARLAQAGEFSKKAFLNHKMDLSEIEASIRLILCEDESVLNALARQLKGELKIFIEEARNNLLKLLASSEVLIDYSEEDIPSDFLNEVSLSLEKQIASFKDLLDFSNMQKQKNKGHALSIIGKPNAGK 226          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_EHRRG (tRNA modification GTPase mnmE OS=Ehrlichia ruminantium (strain Gardel) GN=mnmE PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.094e-17
Identity = 57/163 (34.97%), Postives = 87/163 (53.37%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATL--AQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPL---NLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P   T EDVVEL  HG    +R +L    E G     A PGEF+LRAFLN ++DL++AE +  LI+             + G    L  S R + I++L+ +EA +DF +E+      N++ ++DKI    + +EN +      ++L+ G+ +AI G PN GK
Sbjct:   68 PNSFTGEDVVELHTHGSIAVIRMIL---CELGKIFIPAGPGEFSLRAFLNNKVDLTRAEAIVDLINAETEMQAKQAIRQMSGSLEKLYQSWRQQLIDVLSNMEAYIDFPEEVTSFAVENISFLLDKI---KESLENHLNDGRKGEILRQGIYVAILGEPNSGK 224          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_BAUCH (tRNA modification GTPase mnmE OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=mnmE PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.094e-17
Identity = 60/165 (36.36%), Postives = 91/165 (55.15%), Query Frame = 3
Query:   15 GPKILTREDVVELQCHGPEVCLRRVLRACLEA-GATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNLNLVMDK--IHAMSQDV--ENAMETANYDK-LLQSGLQIAIGGRPNVGK 491
            GP   T ED++EL  HG  V L  +L+  +   G  +A+PGEF+ RAFLN ++DL+QAE +  LI              +QG FS+ +  +  K   L  +IEA+++F +E      N+ +DK  I  + Q +   N + TA Y   +L+ G++I I G+PNVGK
Sbjct:   70 GPNSFTGEDILELHGHGGPVVLDLLLQRIITLPGVRIARPGEFSERAFLNEKIDLAQAEAIADLIDANSAQAARAAISSLQGVFSTTINDLVEKLTSLRVDIEAKINFPEEN---ETNVSIDKKIIANLDQAILSINKIRTAAYQGCILREGIKIVITGKPNVGK 231          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_SULNB (tRNA modification GTPase mnmE OS=Sulfurovum sp. (strain NBC37-1) GN=mnmE PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.735e-17
Identity = 48/159 (30.19%), Postives = 84/159 (52.83%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P   T E++VE QCHG  +  + +L   L  G  LA+PGEF+ RAF NG++DL++AE + KLI              ++G     V   R   +  L   E  +D+ ++++P   +  ++ ++  +S+ +   ++ +   + L  G ++AI G+PNVGK
Sbjct:   73 PFSFTGEEIVEFQCHGGMIVAQEILDTILSYGIRLAEPGEFSKRAFFNGKIDLTEAEAISKLIEAKSVDAAKILAKQMKGELKYFVDESRDALLRSLAYSEVMIDYAEEDIPDDIMRSIVTQLDGLSEQIMKIVDASYRRRGLIEGFKVAIIGKPNVGK 231          
The following BLAST results are available for this feature:
BLAST of EY676899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MNME_VIBHB1.603e-1733.75tRNA modification GTPase mnmE OS=Vibrio harveyi (s... [more]
MNME_ROSS11.603e-1734.38tRNA modification GTPase mnmE OS=Roseiflexus sp. (... [more]
MNME_PARDP1.603e-1735.48tRNA modification GTPase mnmE OS=Paracoccus denitr... [more]
MNME_CAUSK1.603e-1734.38tRNA modification GTPase mnmE OS=Caulobacter sp. (... [more]
MNME_BUCMP1.603e-1733.75tRNA modification GTPase mnmE OS=Buchnera aphidico... [more]
MNME_WOLPP2.094e-1733.13tRNA modification GTPase mnmE OS=Wolbachia pipient... [more]
MNME_HELAH2.094e-1732.70tRNA modification GTPase mnmE OS=Helicobacter acin... [more]
MNME_EHRRG2.094e-1734.97tRNA modification GTPase mnmE OS=Ehrlichia ruminan... [more]
MNME_BAUCH2.094e-1736.36tRNA modification GTPase mnmE OS=Baumannia cicadel... [more]
MNME_SULNB2.735e-1730.19tRNA modification GTPase mnmE OS=Sulfurovum sp. (s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-028-D03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676899 ID=EY676899; Name=EY676899; organism=Citrus sinensis; type=EST; length=983bp
CCACGCGTCCGGTTGGCCCCAAGATCCTCACCCGTGAAGATGTGGTTGAG
CTTCAATGTCACGGCCCTGAAGTGTGTCTGCGCCGTGTGTTAAGAGCTTG
TTTAGAAGCTGGGGCGACCCTTGCTCAACCAGGCGAGTTCACTCTCCGCG
CCTTTCTCAATGGCCGCTTAGACCTATCTCAAGCTGAAAATGTTGAAAAG
TTAATTTCAGCAAAGTCTGTGGCTGCTGCAGATGCAGCTTTGGCAGGAAT
TCAGGGGGGCTTCTCTTCTTTGGTCACGTCAGTGAGAGCGAAGTGCATCG
AGTTGCTTACTGAGATTGAGGCTCGTTTAGATTTTGATGATGAGATGCCT
CCTCTCAATTTAAATCTGGTTATGGATAAAATACACGCAATGTCACAAGA
TGTGGAAAATGCCATGGAGACTGCCAATTATGACAAACTTCTGCAATCTG
GCTTACAAATAGCAATTGGCGGGCGACCAAATGTTGGGAAGTCTAGCCTT
CTTAATGCTTTGGAGCAAAATTGAGAGAACAATAGTTTACAAGAAAATTG
CCGGTACTACTCAAAAATGTCGTTGAAACCAATGGAAACATTATGTGGGT
GGACCTGGGGAAACTTCCTTGAAACCGCAGGGCTTAAAAAAAACTGAAAA
AAATTTGGGGAAAAAAATTGGTGGGGAAAAAGATCTGAAAACAATAACCT
TGGGGGGGGGGAGAGTTATATAAATAGAAAAAGGAGGGGGCAACTTAGAT
GGGTGGAATCTTTCAAAAAAAAAACACCAAACCTCTTATTAAAAAAATTA
CAATGCCCAAATAAAAAAAAGCTCCGCGGGGGACTCTCTCACCCCCCCCG
AGGAGTATTTCATGTGAAAATCAAGCAAAAAAAAGAAGAAGGGGGGCACC
CCCCATCATCACTAAACAACAAAGAAAAGGGGAGAAAAAAAAAGACACGC
GGAGCCAAATAAATTTTTCCGCACGAACAGAGA
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