EY676899

Overview
NameEY676899
Unique NameEY676899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length983
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_MYCPE (tRNA modification GTPase mnmE OS=Mycoplasma penetrans GN=mnmE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.665e-17
Identity = 54/165 (32.73%), Postives = 81/165 (49.09%), Query Frame = 3
Query:   12 VGPKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFD-----DEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            V PK  T ED++E+ CHG  +   ++L   LE+GA LA+ GEFT RAFLN +L L QA ++  LI             GI    +     ++ K   L+ +IE  +D+      +++     NL + +I        N     +Y   L +GL + I G+PNVGK
Sbjct:   67 VAPKSFTGEDLIEINCHGGVLITNKILDLILESGARLAENGEFTKRAFLNNKLTLRQANSINNLIFSKTDIATNLSSNGIINSNNDFFLDIKEKIFYLIGKIEVNIDYPEYEDVEQVTAKEFNLEVKEIIDKLNKTINDFNKVSY---LYNGLNVVIVGKPNVGK 228          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_MAGSA (tRNA modification GTPase mnmE OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=mnmE PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 4.665e-17
Identity = 50/159 (31.45%), Postives = 81/159 (50.94%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P   T EDV EL  HG       +     E G   A+PGEF+ RAFLNG+LDL++AE +  L+              + GG + LV   R+  +  +  +EA +DF D+++P   L   + ++ ++ +++E  ++     + L+ G+ I I G PN GK
Sbjct:   69 PHSFTGEDVAELHLHGGRAVAAALTARLGELGLRPAEPGEFSRRAFLNGKLDLTRAEAIADLVDAETAAQRRQALRQLDGGLAGLVEGWRSALVRAMAHLEAVIDFADEDIPDTLLEQSVGEVRSLRREMEVHLDERRNGERLRDGIHITILGAPNAGK 227          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_DESVV (tRNA modification GTPase mnmE OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=mnmE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.665e-17
Identity = 55/160 (34.38%), Postives = 81/160 (50.62%), Query Frame = 3
Query:   15 GPKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            GP+  T EDV E+ CHG    L  VL AC+  GA  A+ GEFT RAFLNGR+DL+QAE V ++I+             + G     V ++RA+   L  ++   +DF ++E+  L     + +I A+ Q V          +  Q G  + + G+ N GK
Sbjct:   74 GPRTFTGEDVSEIHCHGGSGVLAAVLEACVRHGARYAERGEFTRRAFLNGRMDLTQAEAVAEMIAAPSREGMRLAQAKLDGLLGQRVGALRARLDALRMQLCVAVDFPEEEVECLAPEAFLAEIEAVRQGVVELSAGYARTRCWQDGALVVLAGQVNAGK 233          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_DESVH (tRNA modification GTPase mnmE OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=mnmE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.665e-17
Identity = 55/160 (34.38%), Postives = 81/160 (50.62%), Query Frame = 3
Query:   15 GPKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            GP+  T EDV E+ CHG    L  VL AC+  GA  A+ GEFT RAFLNGR+DL+QAE V ++I+             + G     V ++RA+   L  ++   +DF ++E+  L     + +I A+ Q V          +  Q G  + + G+ N GK
Sbjct:   74 GPRTFTGEDVSEIHCHGGSGVLAAVLEACVRHGARYAERGEFTRRAFLNGRMDLTQAEAVAEMIAAPSREGMRLAQAKLDGLLGQRVGALRARLDALRMQLCVAVDFPEEEVECLAPEAFLAEIEAVRQGVVELSAGYARTRCWQDGALVVLAGQVNAGK 233          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_ACTPJ (tRNA modification GTPase mnmE OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=mnmE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.665e-17
Identity = 55/160 (34.38%), Postives = 86/160 (53.75%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEA-GATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P   T EDV+ELQ HG +V L  +L+  L   G  +A+ GEF+ +AFLN +LDL+QAE +  LI              +QG FS+ +  +    I L T +EA +DF D+E+  L    +   ++ + + +    + A    +L+ G+++ I GRPN GK
Sbjct:   68 PNSFTGEDVLELQGHGGQVILDILLKRILTIKGIRIARAGEFSEQAFLNDKLDLAQAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEEIDFLADGKIEGHLNDIIRQLNGVRKEAKQGAILREGMKVVIAGRPNAGK 227          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_VIBF1 (tRNA modification GTPase mnmE OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=mnmE PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 6.092e-17
Identity = 53/160 (33.12%), Postives = 86/160 (53.75%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEA-GATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P   T EDV+ELQ HG  V +  +++  L+  G   A+PGEF+ RAFLN ++DL+QAE +  LI              +QG FS+ + ++    I L   +EA +DF ++E+  L    V   +  +  ++    + AN   +++ G+++ I GRPN GK
Sbjct:   71 PHSFTGEDVLELQGHGGPVVMDMLIKRILKIDGIRTARPGEFSERAFLNDKMDLAQAEAIADLIDASSEEAAKSALNSLQGVFSNKINTLVESLIYLRIYVEAAIDFPEEEIDFLADGKVSGDLQGIIDNLNAVRKEANQGAIMREGMKVVIAGRPNAGK 230          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_VIBCH (tRNA modification GTPase mnmE OS=Vibrio cholerae GN=mnmE PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 6.092e-17
Identity = 54/160 (33.75%), Postives = 84/160 (52.50%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEA-GATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P   T EDV+ELQ HG  V +  ++R  L+  G   A+PGEF+ RAFLN ++DL+QAE +  LI              +QG FS  + ++    I L   +EA +DF ++E+  L    V   +  +  ++      AN   +++ G+++ I GRPN GK
Sbjct:   69 PHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEEIDFLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGK 228          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_VIBC3 (tRNA modification GTPase mnmE OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=mnmE PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 6.092e-17
Identity = 54/160 (33.75%), Postives = 84/160 (52.50%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEA-GATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P   T EDV+ELQ HG  V +  ++R  L+  G   A+PGEF+ RAFLN ++DL+QAE +  LI              +QG FS  + ++    I L   +EA +DF ++E+  L    V   +  +  ++      AN   +++ G+++ I GRPN GK
Sbjct:   69 PHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEEIDFLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGK 228          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_BUCAP (tRNA modification GTPase mnmE OS=Buchnera aphidicola subsp. Schizaphis graminum GN=mnmE PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 6.092e-17
Identity = 57/164 (34.76%), Postives = 84/164 (51.22%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGP----EVCLRRVLRACLE-AGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNLNL-VMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P  LT EDV+ELQ HG     ++ ++R+L  CL+     +AQPGEF  RAFLNG++DL QAE ++ LI+             + G FS  +  +  K IE  T IEA +DF +E    + N+ +M     ++          +   L++   +I I G PN GK
Sbjct:   70 PFSLTGEDVLELQGHGNPFIMDLLIKRIL--CLKNIKIRIAQPGEFCQRAFLNGKIDLIQAEAIDDLINSETESVVRASLNSLHGNFSFYIQKIIKKLIEFRTNIEASIDFSEENIDFDFNIFIMSNFEKLNDKFLKIKNIVSEGSLIREAKRIVIVGPPNAGK 231          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_WIGBR (tRNA modification GTPase mnmE OS=Wigglesworthia glossinidia brevipalpis GN=mnmE PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.956e-17
Identity = 54/160 (33.75%), Postives = 84/160 (52.50%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEA-GATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDE-MPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            PK LT EDV+E Q HG  V L  +L+  L   G  LA+PGEF  RAF+NG++DL QAE +  LI+             I+G FS  + ++     +L  +IE  +DF +E    +++  +   +  +  ++     + N   +L+ G +I I G+PN GK
Sbjct:   70 PKSLTGEDVLEFQAHGSPVALNFLLQEILSIKGMRLAKPGEFLERAFINGKIDLIQAEAISDLINSCSIQAAKSALISIRGYFSKKINNLILSIKKLRMKIEVDIDFSEENFNKISIECIKHDLEKIILNINKIQCSFNRGAILKEGSKIVIIGKPNSGK 229          
The following BLAST results are available for this feature:
BLAST of EY676899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MNME_MYCPE4.665e-1732.73tRNA modification GTPase mnmE OS=Mycoplasma penetr... [more]
MNME_MAGSA4.665e-1731.45tRNA modification GTPase mnmE OS=Magnetospirillum ... [more]
MNME_DESVV4.665e-1734.38tRNA modification GTPase mnmE OS=Desulfovibrio vul... [more]
MNME_DESVH4.665e-1734.38tRNA modification GTPase mnmE OS=Desulfovibrio vul... [more]
MNME_ACTPJ4.665e-1734.38tRNA modification GTPase mnmE OS=Actinobacillus pl... [more]
MNME_VIBF16.092e-1733.13tRNA modification GTPase mnmE OS=Vibrio fischeri (... [more]
MNME_VIBCH6.092e-1733.75tRNA modification GTPase mnmE OS=Vibrio cholerae G... [more]
MNME_VIBC36.092e-1733.75tRNA modification GTPase mnmE OS=Vibrio cholerae s... [more]
MNME_BUCAP6.092e-1734.76tRNA modification GTPase mnmE OS=Buchnera aphidico... [more]
MNME_WIGBR7.956e-1733.75tRNA modification GTPase mnmE OS=Wigglesworthia gl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-028-D03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676899 ID=EY676899; Name=EY676899; organism=Citrus sinensis; type=EST; length=983bp
CCACGCGTCCGGTTGGCCCCAAGATCCTCACCCGTGAAGATGTGGTTGAG
CTTCAATGTCACGGCCCTGAAGTGTGTCTGCGCCGTGTGTTAAGAGCTTG
TTTAGAAGCTGGGGCGACCCTTGCTCAACCAGGCGAGTTCACTCTCCGCG
CCTTTCTCAATGGCCGCTTAGACCTATCTCAAGCTGAAAATGTTGAAAAG
TTAATTTCAGCAAAGTCTGTGGCTGCTGCAGATGCAGCTTTGGCAGGAAT
TCAGGGGGGCTTCTCTTCTTTGGTCACGTCAGTGAGAGCGAAGTGCATCG
AGTTGCTTACTGAGATTGAGGCTCGTTTAGATTTTGATGATGAGATGCCT
CCTCTCAATTTAAATCTGGTTATGGATAAAATACACGCAATGTCACAAGA
TGTGGAAAATGCCATGGAGACTGCCAATTATGACAAACTTCTGCAATCTG
GCTTACAAATAGCAATTGGCGGGCGACCAAATGTTGGGAAGTCTAGCCTT
CTTAATGCTTTGGAGCAAAATTGAGAGAACAATAGTTTACAAGAAAATTG
CCGGTACTACTCAAAAATGTCGTTGAAACCAATGGAAACATTATGTGGGT
GGACCTGGGGAAACTTCCTTGAAACCGCAGGGCTTAAAAAAAACTGAAAA
AAATTTGGGGAAAAAAATTGGTGGGGAAAAAGATCTGAAAACAATAACCT
TGGGGGGGGGGAGAGTTATATAAATAGAAAAAGGAGGGGGCAACTTAGAT
GGGTGGAATCTTTCAAAAAAAAAACACCAAACCTCTTATTAAAAAAATTA
CAATGCCCAAATAAAAAAAAGCTCCGCGGGGGACTCTCTCACCCCCCCCG
AGGAGTATTTCATGTGAAAATCAAGCAAAAAAAAGAAGAAGGGGGGCACC
CCCCATCATCACTAAACAACAAAGAAAAGGGGAGAAAAAAAAAGACACGC
GGAGCCAAATAAATTTTTCCGCACGAACAGAGA
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