EY676899

Overview
NameEY676899
Unique NameEY676899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length983
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_RICCN (tRNA modification GTPase mnmE OS=Rickettsia conorii GN=mnmE PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.956e-17
Identity = 56/160 (35.00%), Postives = 85/160 (53.12%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLE-AGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P   T EDVVE+  HG +     +  A L  AG  LA+ GEFT RAFLN + DL+ AE +  LI+               G   +L  + R++ +++L+ +EA +DF D+++P   LN V +    +   +   +      +LL+SGL++AI G PNVGK
Sbjct:   69 PGSFTGEDVVEIHTHGSKAISIMLTNALLNIAGIRLAEAGEFTKRAFLNNKFDLTAAEGIADLINAETIMQHKQAIRQASGKLEALYNNWRSQLLKMLSLLEAYIDFPDEDIPDTVLNEVTNTHTILVNTISEYLNDNRKGELLRSGLKLAIIGPPNVGK 228          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_ACTP2 (tRNA modification GTPase mnmE OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=mnmE PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.956e-17
Identity = 55/160 (34.38%), Postives = 85/160 (53.12%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEA-GATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P   T EDV+ELQ HG +V L  +L+  L   G  +A+ GEF+ +AFLN +LDL+QAE +  LI              +QG FS+ +  +    I L T +EA +DF D+E+  L    +   ++   + +    + A    +L+ G+++ I GRPN GK
Sbjct:   68 PNSFTGEDVLELQGHGGQVILDILLKRILTIKGIRIARAGEFSEQAFLNDKLDLAQAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEEIDFLADGKIEGHLNDTIRQLNGVRKEAKQGAILREGMKVVIAGRPNAGK 227          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_PSYIN (tRNA modification GTPase mnmE OS=Psychromonas ingrahamii (strain 37) GN=mnmE PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.039e-16
Identity = 53/160 (33.12%), Postives = 84/160 (52.50%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEA-GATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P   T EDV+ELQ HG  V +  +++A L       A PGEF+ RAF+N +LDL+QAE +  LI              +QG FS  +  +    I L   +EA +DF ++E+  L+   +   ++ +  ++E   + A    +L+ G+++ I GRPN GK
Sbjct:   71 PNSFTGEDVLELQGHGGPVVMDMLIKAILSIKNLRGANPGEFSERAFMNDKLDLAQAEGIADLIEATSEQAAKSALHSLQGEFSEKIEQLVESLIYLRIYVEASIDFPEEEVDFLSDGKISKGLYQIIDNLEAVKKQAKQGAILRDGMKVVIAGRPNAGK 230          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_BACV8 (tRNA modification GTPase mnmE OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=mnmE PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.039e-16
Identity = 51/160 (31.87%), Postives = 83/160 (51.88%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFDD--EMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P   T ED  E+ CHG    L++V++  +  G   A PGE+T RAFLNG++DLSQAE V  LI+             ++GGFS  ++++R + +   + +E  LDF D  E+   N + +      + Q +     + +    +++G+ +AI G  N GK
Sbjct:  110 PHSYTGEDSTEIMCHGSSYILQQVIQLLIYNGCRAALPGEYTQRAFLNGKMDLSQAEAVADLIASSSASTHRLAMSQMRGGFSKELSNLRNQLLHFTSLMELELDFSDHEELEFANRDELSSLATHIEQVIARLAHSFSVGNAIKNGIPVAIIGETNAGK 269          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_NITHX (tRNA modification GTPase mnmE OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=mnmE PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.357e-16
Identity = 58/166 (34.94%), Postives = 83/166 (50.00%), Query Frame = 3
Query:   15 GPKILTREDVVELQCHGPEVCLRRVLRACLEAGATL-----AQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDE--MPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            GP   T EDV E   HG     R VL A   A +++     A+PGEFT RAF NG++DL++AE ++ LI              +QG         R + IE    IEA +DF DE  +P   L   M+KI  + +++E  +  +   + L+ G+ +AI G PN GK
Sbjct:   70 GPASATGEDVAEFHVHGS----RAVLNALFAALSSIDHVRPAEPGEFTRRAFENGKIDLTEAEGLDDLIHADTDRQRRQALRQLQGLLGDRAREWRRELIEASALIEAGIDFADEGDVPDDLLKPAMEKIARLRREIEETLAASAQSERLRDGMTVAIAGPPNAGK 231          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_MAGSM (tRNA modification GTPase mnmE OS=Magnetococcus sp. (strain MC-1) GN=mnmE PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.357e-16
Identity = 50/159 (31.45%), Postives = 83/159 (52.20%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDE-MPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P   + ED+VEL  HG  V ++R++   +  G   A PGEF+ RAF N ++DL QAE +  LI              + G  S  + +++   +     +EA LDF DE + P +   ++D++  +   ++  + TA   + ++ G ++AI GRPNVGK
Sbjct:   87 PHSFSGEDMVELHGHGAPVVVKRIMEVLVAHGVRPADPGEFSKRAFFNNKMDLVQAEALMGLIEATSLRAAREASRQMTGTLSEHLMALKDHLVLTYAHLEAALDFSDEDIEPESEGGLLDRLAYVHAGIKKMLGTAELGRQMRDGFELAIVGRPNVGK 245          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_HELPH (tRNA modification GTPase mnmE OS=Helicobacter pylori (strain HPAG1) GN=mnmE PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.357e-16
Identity = 50/159 (31.45%), Postives = 81/159 (50.94%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDE-MPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P   T EDV E+QCHG  +  + +L+ACL  GA LA+ GEF+ +AFLN ++DLS+ E   +LI              ++G     +   R+  ++LL   E  +D+ +E +P   L  V   +       ++ ++ +N  K    G  ++I G+PN GK
Sbjct:   79 PYSFTGEDVCEIQCHGSPLLAQNILQACLNLGARLAKAGEFSKKAFLNHKMDLSEIEASVQLILCEDESVLNALARQLKGELKIFIEEARSDLLKLLASSEVLIDYSEEDIPSDFLKEVSFNLEKQIASFKDLLDFSNAQKQKNKGHALSIVGKPNAGK 237          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_HAEDU (tRNA modification GTPase mnmE OS=Haemophilus ducreyi GN=mnmE PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.357e-16
Identity = 58/164 (35.37%), Postives = 87/164 (53.05%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEA-GATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNLNLVMD-KIHAMSQDVENAM----ETANYDKLLQSGLQIAIGGRPNVGK 491
            P   T EDV+ELQ HG +V L  +L+  L   G  +A+ GEF+ +AFLN +LDL+QAE +  LI              +QG FS+ +  +  + I L T +EA +DF DE     ++ + D KI     D+ + +    + A    +L+ G++  I GRPN GK
Sbjct:   68 PNSFTGEDVLELQGHGGQVILDLLLKRILTINGIRIARTGEFSEQAFLNDKLDLAQAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDQVIYLRTYVEAAIDFPDE----EIDFLADGKIERHLNDIIHQLAAVRQEAKQGSILREGMKAVIAGRPNAGK 227          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_BDEBA (tRNA modification GTPase mnmE OS=Bdellovibrio bacteriovorus GN=mnmE PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.357e-16
Identity = 49/155 (31.61%), Postives = 79/155 (50.97%), Query Frame = 3
Query:   30 TREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDE-MPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            T E+V+E+ CHG  +  + +L   +  GA  A  GEFT RAF+NG+LDL QAE+V  LI              ++G  S  +  +      +L   EA +DF  E +  +  N++  ++  +   ++  + T    +LL+ G +I + G PNVGK
Sbjct:   85 TGEEVIEISCHGSPLICQTILNQLVNLGARPADRGEFTFRAFMNGKLDLVQAESVLSLIESQSQQAAKLALRQLKGTLSHKLEEIEDDMTWILAHAEASIDFSTEGIEVIEENVIQVRLKKIEAGLKELVATFKVGRLLKDGFRIVLTGLPNVGK 239          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_HELPY (tRNA modification GTPase mnmE OS=Helicobacter pylori GN=mnmE PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.773e-16
Identity = 50/159 (31.45%), Postives = 81/159 (50.94%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDE-MPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P   T EDV E+QCHG  +  + +L+ACL  GA LA+ GEF+ +AFLN ++DLS+ E   +LI              ++G     +   R   ++LL   E  +D+ +E +P   L+ V   +       ++ ++ +N  K    G  ++I G+PN GK
Sbjct:   79 PYSFTGEDVCEIQCHGSPLLAQNILQACLNLGARLAKAGEFSKKAFLNHKMDLSEIEASVQLILCEDESVLNALARQLKGELKIFIEEARGNLLKLLASSEVLIDYSEEDIPSDFLDGVSLNLEKQIASFKDLLDFSNAQKQRNKGHALSIVGKPNAGK 237          
The following BLAST results are available for this feature:
BLAST of EY676899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MNME_RICCN7.956e-1735.00tRNA modification GTPase mnmE OS=Rickettsia conori... [more]
MNME_ACTP27.956e-1734.38tRNA modification GTPase mnmE OS=Actinobacillus pl... [more]
MNME_PSYIN1.039e-1633.13tRNA modification GTPase mnmE OS=Psychromonas ingr... [more]
MNME_BACV81.039e-1631.88tRNA modification GTPase mnmE OS=Bacteroides vulga... [more]
MNME_NITHX1.357e-1634.94tRNA modification GTPase mnmE OS=Nitrobacter hambu... [more]
MNME_MAGSM1.357e-1631.45tRNA modification GTPase mnmE OS=Magnetococcus sp.... [more]
MNME_HELPH1.357e-1631.45tRNA modification GTPase mnmE OS=Helicobacter pylo... [more]
MNME_HAEDU1.357e-1635.37tRNA modification GTPase mnmE OS=Haemophilus ducre... [more]
MNME_BDEBA1.357e-1631.61tRNA modification GTPase mnmE OS=Bdellovibrio bact... [more]
MNME_HELPY1.773e-1631.45tRNA modification GTPase mnmE OS=Helicobacter pylo... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-028-D03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676899 ID=EY676899; Name=EY676899; organism=Citrus sinensis; type=EST; length=983bp
CCACGCGTCCGGTTGGCCCCAAGATCCTCACCCGTGAAGATGTGGTTGAG
CTTCAATGTCACGGCCCTGAAGTGTGTCTGCGCCGTGTGTTAAGAGCTTG
TTTAGAAGCTGGGGCGACCCTTGCTCAACCAGGCGAGTTCACTCTCCGCG
CCTTTCTCAATGGCCGCTTAGACCTATCTCAAGCTGAAAATGTTGAAAAG
TTAATTTCAGCAAAGTCTGTGGCTGCTGCAGATGCAGCTTTGGCAGGAAT
TCAGGGGGGCTTCTCTTCTTTGGTCACGTCAGTGAGAGCGAAGTGCATCG
AGTTGCTTACTGAGATTGAGGCTCGTTTAGATTTTGATGATGAGATGCCT
CCTCTCAATTTAAATCTGGTTATGGATAAAATACACGCAATGTCACAAGA
TGTGGAAAATGCCATGGAGACTGCCAATTATGACAAACTTCTGCAATCTG
GCTTACAAATAGCAATTGGCGGGCGACCAAATGTTGGGAAGTCTAGCCTT
CTTAATGCTTTGGAGCAAAATTGAGAGAACAATAGTTTACAAGAAAATTG
CCGGTACTACTCAAAAATGTCGTTGAAACCAATGGAAACATTATGTGGGT
GGACCTGGGGAAACTTCCTTGAAACCGCAGGGCTTAAAAAAAACTGAAAA
AAATTTGGGGAAAAAAATTGGTGGGGAAAAAGATCTGAAAACAATAACCT
TGGGGGGGGGGAGAGTTATATAAATAGAAAAAGGAGGGGGCAACTTAGAT
GGGTGGAATCTTTCAAAAAAAAAACACCAAACCTCTTATTAAAAAAATTA
CAATGCCCAAATAAAAAAAAGCTCCGCGGGGGACTCTCTCACCCCCCCCG
AGGAGTATTTCATGTGAAAATCAAGCAAAAAAAAGAAGAAGGGGGGCACC
CCCCATCATCACTAAACAACAAAGAAAAGGGGAGAAAAAAAAAGACACGC
GGAGCCAAATAAATTTTTCCGCACGAACAGAGA
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