EY676899

Overview
NameEY676899
Unique NameEY676899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length983
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig870 contig Csv1_Contig870:126..1108. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_BORRA (tRNA modification GTPase mnmE OS=Borrelia recurrentis (strain A1) GN=mnmE PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.501e-15
Identity = 46/158 (29.11%), Postives = 84/158 (53.16%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            PK  T +D +E+  HG  + +RR++   L+ G  +A+PGEFTLR+FL G+LDL++AE + +LIS             + G     +  ++   +  L+ I   LD+  E     + + +D I     ++E  +++ +  + L++G+ + + G  NVGK
Sbjct:   80 PKSFTGQDSIEVMAHGSLIGIRRIIDFFLKVGFRMAEPGEFTLRSFLAGKLDLTKAEAINELISAKTRQVHALAVNKLSGSLFDKIDLIKKDILNFLSAISVYLDY--ETDDNEVVIPVDIILKSKSELERLIDSYDTARKLENGVTLVLAGSVNVGK 235          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_BORDL (tRNA modification GTPase mnmE OS=Borrelia duttonii (strain Ly) GN=mnmE PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.501e-15
Identity = 46/158 (29.11%), Postives = 84/158 (53.16%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            PK  T +D +E+  HG  + +RR++   L+ G  +A+PGEFTLR+FL G+LDL++AE + +LIS             + G     +  ++   +  L+ I   LD+  E     + + +D I     ++E  +++ +  + L++G+ + + G  NVGK
Sbjct:   80 PKSFTGQDSIEVMAHGSLIGIRRIIDFFLKVGFRMAEPGEFTLRSFLAGKLDLTKAEAINELISAKTRQVHALAVNKLSGSLFDKIDLIKKDILNFLSAISVYLDY--ETDDNEVVIPVDIILKSKSELERLIDSYDTARKLENGVTLVLAGSVNVGK 235          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_BLOPB (tRNA modification GTPase mnmE OS=Blochmannia pennsylvanicus (strain BPEN) GN=mnmE PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.960e-15
Identity = 49/161 (30.43%), Postives = 83/161 (51.55%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATL--AQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P   T E+++E+  HG ++ L  +L   L+  + +  A PGEFT RAFLN ++DL QAE +  +I              +QG FS  +  +  +   L    E+ +DF +DE+  +    +  K+  +  DV+   ++  +  LL+ G++I I G+PN GK
Sbjct:   71 PNSFTGENILEIHGHGGQIILDILLERILKTSSDIRIAHPGEFTKRAFLNNKIDLVQAEAIADIIDATSYQAAKSASNSLQGIFSRKIYIILEQLTNLRMYAESSIDFSEDEISIIPYEDIKKKLRNIISDVQKMYKSTYHGVLLREGIKIVIAGKPNAGK 231          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_SILST (tRNA modification GTPase mnmE OS=Silicibacter sp. (strain TM1040) GN=mnmE PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.559e-15
Identity = 54/160 (33.75%), Postives = 77/160 (48.12%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAG-ATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNLN-LVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P   T E++VE Q HG    +  V+ A  E G A LA PGEFT RA  NG+LDL+Q E +  LI              + G    L    R   I   + IE  +DF DE  P+++   V   +  +  D+E  ++     + ++ G ++AI G PNVGK
Sbjct:   67 PDSFTGENIVEFQLHGSIAVVSAVMSAIEETGVARLADPGEFTRRALDNGKLDLTQVEGLADLIDAETEAQRKQAQVILAGTLGDLADRWRTDLIRAASLIEVTIDFADEEVPVDVTPEVKQLLSGVLHDIEKEVDGVAIAERIREGFEVAIVGSPNVGK 226          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_RICBR (tRNA modification GTPase mnmE OS=Rickettsia bellii (strain RML369-C) GN=mnmE PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.559e-15
Identity = 53/160 (33.12%), Postives = 80/160 (50.00%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEA-GATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P   T EDVVE+  HG +     +  A L   G  LA+ GEFT RAFLN + DL+ AE +  LI+               G    L  S R++ + +++ +EA +DF D+++P   L  V +    +   +   +      +LL+SGL++AI G PN GK
Sbjct:   69 PNSFTGEDVVEIHTHGSKAISIMLTNALLNIPGVRLAEAGEFTKRAFLNNKFDLTAAEGIADLINAETIMQHKQAIRQAGGALEELYNSWRSQLLRIISLLEAYIDFPDEDIPESVLKDVTNTHKTLINTISEYLNDNRKGELLRSGLKLAIIGPPNAGK 228          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_RICB8 (tRNA modification GTPase mnmE OS=Rickettsia bellii (strain OSU 85-389) GN=mnmE PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.559e-15
Identity = 53/160 (33.12%), Postives = 80/160 (50.00%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEA-GATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P   T EDVVE+  HG +     +  A L   G  LA+ GEFT RAFLN + DL+ AE +  LI+               G    L  S R++ + +++ +EA +DF D+++P   L  V +    +   +   +      +LL+SGL++AI G PN GK
Sbjct:   69 PNSFTGEDVVEIHTHGSKAISIMLTNALLNIPGVRLAEAGEFTKRAFLNNKFDLTAAEGIADLINAETIMQHKQAIRQAGGALEELYNSWRSQLLRIISLLEAYIDFPDEDIPESVLKDVTNTHKTLINTISEYLNDNRKGELLRSGLKLAIIGPPNAGK 228          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_LAWIP (tRNA modification GTPase mnmE OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=mnmE PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.559e-15
Identity = 51/159 (32.08%), Postives = 79/159 (49.69%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P   T EDVVEL CHG    L  +L   L     LA+PGEF+ RAFLNGR+DL+QAE V +LI+             ++G     +  +R +  EL   I   +DF ++E     L   ++ +  + + ++  +  A   +  + G+ +A+ G  N GK
Sbjct:   74 PYTFTGEDVVELHCHGGHFLLLTILETVLCKNIRLAKPGEFSQRAFLNGRMDLTQAEAVAELIAASSRNEVLLASNRLKGLLGQKIIDIRRRIEELRVWICLAVDFPEEESGIFPLEKFINGLLEIHEIIQKLIHAAERSRCWKEGVTVALAGAVNAGK 232          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_EHRCJ (tRNA modification GTPase mnmE OS=Ehrlichia canis (strain Jake) GN=mnmE PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.559e-15
Identity = 54/162 (33.33%), Postives = 82/162 (50.62%), Query Frame = 3
Query:   12 VGPKILTREDVVELQCHGPEVCLRRVLRACLEAGATL--AQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            V P   T EDVVE   HG    ++ +L    E G     A PGEF+LRAFLN ++DL++AE +  LI+             + G    L  S R + I++L+ IEA +DF +E+    L  +   ++ + + +E  +      + L+ G+ IAI G PN GK
Sbjct:   68 VAPSSFTGEDVVEFHTHGSLAVIKMILA---ELGKIFVPAGPGEFSLRAFLNNKVDLTRAEAIVDLINSETEMQAKQAIRQMSGALEKLYQSWRQQLIDILSNIEAYIDFPEEVNSAALANIGYLLNNLQESLECHLNDDRKGERLRQGIYIAIVGEPNSGK 226          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_BLOFL (tRNA modification GTPase mnmE OS=Blochmannia floridanus GN=mnmE PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.559e-15
Identity = 49/161 (30.43%), Postives = 83/161 (51.55%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGAT--LAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P   T E+++E+  HG ++ L  +L   L   +   LA PGEFT RAFLN ++DL QAE++  +I+             +QG FS+ +  +  K     T IE+ LDF D E+  ++   + + +  +  +     +  +   LL+ G+++ I G+PN GK
Sbjct:   72 PHSFTGENILEIHGHGGQMILDLLLDRILNISSRIRLANPGEFTERAFLNEKIDLIQAESIADIINATSYQAAKSACNSLQGHFSNQIRIILNKITNFRTYIESTLDFSDQEISDISYQHIYNTLQNIIDNTNQICKLTHSGVLLRDGIKVVIAGKPNAGK 232          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_RHOP5 (tRNA modification GTPase mnmE OS=Rhodopseudomonas palustris (strain BisA53) GN=mnmE PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 3.343e-15
Identity = 58/163 (35.58%), Postives = 80/163 (49.08%), Query Frame = 3
Query:   15 GPKILTREDVVELQCHGPEVCLRRVLRACLEA--GATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDE--MPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            GP   T EDV E   HG    L   L A L +      A+PGEFT RAF +G++DL++AE ++ LI              + G         RA+ IE    IEA +DF DE  +P   L   + KI A++ ++E  +      + L+ GL +AI G PNVGK
Sbjct:   70 GPASATGEDVAEFHIHGGRAVLA-ALMATLSSFENVRAAEPGEFTRRAFEHGKIDLTEAEGLDDLIHADTDRQRRQALRQLNGLLGDRARDWRAQIIEAQALIEAGIDFADEGDVPDDLLAPALAKIEALAGEIEALLAAQGRSERLRDGLVVAIVGPPNVGK 231          
The following BLAST results are available for this feature:
BLAST of EY676899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MNME_BORRA1.501e-1529.11tRNA modification GTPase mnmE OS=Borrelia recurren... [more]
MNME_BORDL1.501e-1529.11tRNA modification GTPase mnmE OS=Borrelia duttonii... [more]
MNME_BLOPB1.960e-1530.43tRNA modification GTPase mnmE OS=Blochmannia penns... [more]
MNME_SILST2.559e-1533.75tRNA modification GTPase mnmE OS=Silicibacter sp. ... [more]
MNME_RICBR2.559e-1533.13tRNA modification GTPase mnmE OS=Rickettsia bellii... [more]
MNME_RICB82.559e-1533.13tRNA modification GTPase mnmE OS=Rickettsia bellii... [more]
MNME_LAWIP2.559e-1532.08tRNA modification GTPase mnmE OS=Lawsonia intracel... [more]
MNME_EHRCJ2.559e-1533.33tRNA modification GTPase mnmE OS=Ehrlichia canis (... [more]
MNME_BLOFL2.559e-1530.43tRNA modification GTPase mnmE OS=Blochmannia flori... [more]
MNME_RHOP53.343e-1535.58tRNA modification GTPase mnmE OS=Rhodopseudomonas ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-028-D03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676899 ID=EY676899; Name=EY676899; organism=Citrus sinensis; type=EST; length=983bp
CCACGCGTCCGGTTGGCCCCAAGATCCTCACCCGTGAAGATGTGGTTGAG
CTTCAATGTCACGGCCCTGAAGTGTGTCTGCGCCGTGTGTTAAGAGCTTG
TTTAGAAGCTGGGGCGACCCTTGCTCAACCAGGCGAGTTCACTCTCCGCG
CCTTTCTCAATGGCCGCTTAGACCTATCTCAAGCTGAAAATGTTGAAAAG
TTAATTTCAGCAAAGTCTGTGGCTGCTGCAGATGCAGCTTTGGCAGGAAT
TCAGGGGGGCTTCTCTTCTTTGGTCACGTCAGTGAGAGCGAAGTGCATCG
AGTTGCTTACTGAGATTGAGGCTCGTTTAGATTTTGATGATGAGATGCCT
CCTCTCAATTTAAATCTGGTTATGGATAAAATACACGCAATGTCACAAGA
TGTGGAAAATGCCATGGAGACTGCCAATTATGACAAACTTCTGCAATCTG
GCTTACAAATAGCAATTGGCGGGCGACCAAATGTTGGGAAGTCTAGCCTT
CTTAATGCTTTGGAGCAAAATTGAGAGAACAATAGTTTACAAGAAAATTG
CCGGTACTACTCAAAAATGTCGTTGAAACCAATGGAAACATTATGTGGGT
GGACCTGGGGAAACTTCCTTGAAACCGCAGGGCTTAAAAAAAACTGAAAA
AAATTTGGGGAAAAAAATTGGTGGGGAAAAAGATCTGAAAACAATAACCT
TGGGGGGGGGGAGAGTTATATAAATAGAAAAAGGAGGGGGCAACTTAGAT
GGGTGGAATCTTTCAAAAAAAAAACACCAAACCTCTTATTAAAAAAATTA
CAATGCCCAAATAAAAAAAAGCTCCGCGGGGGACTCTCTCACCCCCCCCG
AGGAGTATTTCATGTGAAAATCAAGCAAAAAAAAGAAGAAGGGGGGCACC
CCCCATCATCACTAAACAACAAAGAAAAGGGGAGAAAAAAAAAGACACGC
GGAGCCAAATAAATTTTTCCGCACGAACAGAGA
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