EY676899

Overview
NameEY676899
Unique NameEY676899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length983
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Homology
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_CLOPS (tRNA modification GTPase mnmE OS=Clostridium perfringens (strain SM101 / Type A) GN=mnmE PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.468e-26
Identity = 67/162 (41.36%), Postives = 98/162 (60.49%), Query Frame = 3
Query:   15 GPKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDF--DDEMPPLNLNL-VMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            GP+  T ED VE+ CHG  V   +VL+  ++AGA LA+PGEFT RAFLNGR+DLSQAE V  +I+              QG  S+ + ++R + +++L  IE  +DF  DDE P   + + V + +  +   V N ++TA+  KL++ GL + I G+PNVGK
Sbjct:   76 GPRSFTAEDTVEINCHGGIVATNKVLQNVIKAGARLAEPGEFTKRAFLNGRIDLSQAEAVMDIITAKTELSMKSAMTQSQGRLSTEINNLRKEALDILALIEYAVDFTEDDEEPDETIPVKVKEDVITLRGKVNNLIDTADEGKLIRDGLSMVIVGKPNVGK 237          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_CLOPE (tRNA modification GTPase mnmE OS=Clostridium perfringens GN=mnmE PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.468e-26
Identity = 67/162 (41.36%), Postives = 98/162 (60.49%), Query Frame = 3
Query:   15 GPKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDF--DDEMPPLNLNL-VMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            GP+  T ED VE+ CHG  V   +VL+  ++AGA LA+PGEFT RAFLNGR+DLSQAE V  +I+              QG  S+ + ++R + +++L  IE  +DF  DDE P   + + V + +  +   V N ++TA+  KL++ GL + I G+PNVGK
Sbjct:   76 GPRSFTAEDTVEINCHGGIVATNKVLQNVIKAGARLAEPGEFTKRAFLNGRIDLSQAEAVMDIITAKTELSMKSAMTQSQGRLSTEINNLRKEALDILALIEYAVDFTEDDEEPDETIPVKVKEDVITLRGKVNNLIDTADEGKLIRDGLSMVIVGKPNVGK 237          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_CLOP1 (tRNA modification GTPase mnmE OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=mnmE PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.468e-26
Identity = 67/162 (41.36%), Postives = 98/162 (60.49%), Query Frame = 3
Query:   15 GPKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDF--DDEMPPLNLNL-VMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            GP+  T ED VE+ CHG  V   +VL+  ++AGA LA+PGEFT RAFLNGR+DLSQAE V  +I+              QG  S+ + ++R + +++L  IE  +DF  DDE P   + + V + +  +   V N ++TA+  KL++ GL + I G+PNVGK
Sbjct:   76 GPRSFTAEDTVEINCHGGIVATNKVLQNVIKAGARLAEPGEFTKRAFLNGRIDLSQAEAVMDIITAKTELSMKSAMTQSQGRLSTEINNLRKEALDILALIEYAVDFTEDDEEPDETIPVKVKEDVITLRGKVNNLIDTADEGKLIRDGLSMVIVGKPNVGK 237          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_LACS1 (tRNA modification GTPase mnmE OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=mnmE PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 3.223e-26
Identity = 61/162 (37.65%), Postives = 96/162 (59.26%), Query Frame = 3
Query:   12 VGPKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            + P+  TREDV+E+ CHG  V   ++L+  L  GA LA+PGEFT RAFL+GR+DL+QAE+V  LI              + G  S L+ ++R   +++L ++E  +D+   D++  L   ++ +K   + + ++  + TA   K+L+ GL  AI GRPNVGK
Sbjct:   78 LAPRTFTREDVIEINCHGGIVPTNQILQLLLSNGARLAEPGEFTKRAFLHGRIDLTQAESVMDLIRAKTDRSMKVALNQLDGNLSHLIRNLRQDILDVLAQVEVNIDYPEYDDVETLTTKMLREKAIEVKKSIQQLLTTAKQGKVLREGLATAIVGRPNVGK 239          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_STRTD (tRNA modification GTPase mnmE OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=mnmE PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 4.209e-26
Identity = 63/160 (39.38%), Postives = 90/160 (56.25%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            PK  TREDVVE+  HG       +L+  + +GA +A+PGEFT RAFLNGR+DL+QAE V  LI              + G   +L+ + R + +  L ++E  +D+   D++  +  NLV +K       +EN + TA   K+L+ GL  AI GRPNVGK
Sbjct:   76 PKTFTREDVVEINTHGGVAVTNEILQLLIRSGARMAEPGEFTKRAFLNGRIDLTQAEAVMDLIRAKTDKAMTVAVSQLDGSLKNLINNTRQEILNTLAQVEVNIDYPEYDDVEEVTTNLVREKTQEFQALLENLLATAKRGKILREGLSTAIIGRPNVGK 235          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_STRT1 (tRNA modification GTPase mnmE OS=Streptococcus thermophilus (strain CNRZ 1066) GN=mnmE PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 4.209e-26
Identity = 63/160 (39.38%), Postives = 90/160 (56.25%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            PK  TREDVVE+  HG       +L+  + +GA +A+PGEFT RAFLNGR+DL+QAE V  LI              + G   +L+ + R + +  L ++E  +D+   D++  +  NLV +K       +EN + TA   K+L+ GL  AI GRPNVGK
Sbjct:   76 PKTFTREDVVEINTHGGVAVTNEILQLLIRSGARMAEPGEFTKRAFLNGRIDLTQAEAVMDLIRAKTDKAMTVAVSQLDGSLKNLINNTRQEILNTLAQVEVNIDYPEYDDVEEVTTNLVREKTQEFQALLENLLATAKRGKILREGLSTAIIGRPNVGK 235          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_BACAH (tRNA modification GTPase mnmE OS=Bacillus thuringiensis (strain Al Hakam) GN=mnmE PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 4.209e-26
Identity = 62/160 (38.75%), Postives = 94/160 (58.75%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P+  TRE++VE+ CHG  V + +VL+  L  G  LA+PGEFT RAFLNGR+DLSQAE V  LI              ++G  S L+  +R   +E L  +E  +D+   D++  +  N++++K   +  ++   +ET+   K+L+ G+  AI GRPNVGK
Sbjct:   74 PRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAEPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDYPEYDDVEEMTHNILIEKATHVRSEIAKILETSKQGKILREGIATAIIGRPNVGK 233          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_STRT2 (tRNA modification GTPase mnmE OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=mnmE PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.497e-26
Identity = 63/160 (39.38%), Postives = 90/160 (56.25%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            PK  TREDVVE+  HG       +L+  + +GA +A+PGEFT RAFLNGR+DL+QAE V  LI              + G   +L+ + R + +  L ++E  +D+   D++  +  NLV +K       +EN + TA   K+L+ GL  AI GRPNVGK
Sbjct:   76 PKTFTREDVVEVNTHGGVAVTNEILQLLIRSGARMAEPGEFTKRAFLNGRIDLTQAEAVMDLIRAKTDKAMTVAVSQLDGSLKNLINNTRQEILNTLAQVEVNIDYPEYDDVEEVTTNLVREKTQEFQALLENLLATAKRGKILREGLSTAIIGRPNVGK 235          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_BACHK (tRNA modification GTPase mnmE OS=Bacillus thuringiensis subsp. konkukian GN=mnmE PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.497e-26
Identity = 62/160 (38.75%), Postives = 94/160 (58.75%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P+  TRE++VE+ CHG  V + +VL+  L  G  LA+PGEFT RAFLNGR+DLSQAE V  LI              ++G  S L+  +R   +E L  +E  +D+   D++  +  N++++K   +  ++   +ET+   K+L+ G+  AI GRPNVGK
Sbjct:   74 PRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAEPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDYPEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPNVGK 233          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_BACCZ (tRNA modification GTPase mnmE OS=Bacillus cereus (strain ZK / E33L) GN=mnmE PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.497e-26
Identity = 62/160 (38.75%), Postives = 94/160 (58.75%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P+  TRE++VE+ CHG  V + +VL+  L  G  LA+PGEFT RAFLNGR+DLSQAE V  LI              ++G  S L+  +R   +E L  +E  +D+   D++  +  N++++K   +  ++   +ET+   K+L+ G+  AI GRPNVGK
Sbjct:   74 PRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAEPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDYPEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPNVGK 233          
The following BLAST results are available for this feature:
BLAST of EY676899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MNME_CLOPS2.468e-2641.36tRNA modification GTPase mnmE OS=Clostridium perfr... [more]
MNME_CLOPE2.468e-2641.36tRNA modification GTPase mnmE OS=Clostridium perfr... [more]
MNME_CLOP12.468e-2641.36tRNA modification GTPase mnmE OS=Clostridium perfr... [more]
MNME_LACS13.223e-2637.65tRNA modification GTPase mnmE OS=Lactobacillus sal... [more]
MNME_STRTD4.209e-2639.38tRNA modification GTPase mnmE OS=Streptococcus the... [more]
MNME_STRT14.209e-2639.38tRNA modification GTPase mnmE OS=Streptococcus the... [more]
MNME_BACAH4.209e-2638.75tRNA modification GTPase mnmE OS=Bacillus thuringi... [more]
MNME_STRT25.497e-2639.38tRNA modification GTPase mnmE OS=Streptococcus the... [more]
MNME_BACHK5.497e-2638.75tRNA modification GTPase mnmE OS=Bacillus thuringi... [more]
MNME_BACCZ5.497e-2638.75tRNA modification GTPase mnmE OS=Bacillus cereus (... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-028-D03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676899 ID=EY676899; Name=EY676899; organism=Citrus sinensis; type=EST; length=983bp
CCACGCGTCCGGTTGGCCCCAAGATCCTCACCCGTGAAGATGTGGTTGAG
CTTCAATGTCACGGCCCTGAAGTGTGTCTGCGCCGTGTGTTAAGAGCTTG
TTTAGAAGCTGGGGCGACCCTTGCTCAACCAGGCGAGTTCACTCTCCGCG
CCTTTCTCAATGGCCGCTTAGACCTATCTCAAGCTGAAAATGTTGAAAAG
TTAATTTCAGCAAAGTCTGTGGCTGCTGCAGATGCAGCTTTGGCAGGAAT
TCAGGGGGGCTTCTCTTCTTTGGTCACGTCAGTGAGAGCGAAGTGCATCG
AGTTGCTTACTGAGATTGAGGCTCGTTTAGATTTTGATGATGAGATGCCT
CCTCTCAATTTAAATCTGGTTATGGATAAAATACACGCAATGTCACAAGA
TGTGGAAAATGCCATGGAGACTGCCAATTATGACAAACTTCTGCAATCTG
GCTTACAAATAGCAATTGGCGGGCGACCAAATGTTGGGAAGTCTAGCCTT
CTTAATGCTTTGGAGCAAAATTGAGAGAACAATAGTTTACAAGAAAATTG
CCGGTACTACTCAAAAATGTCGTTGAAACCAATGGAAACATTATGTGGGT
GGACCTGGGGAAACTTCCTTGAAACCGCAGGGCTTAAAAAAAACTGAAAA
AAATTTGGGGAAAAAAATTGGTGGGGAAAAAGATCTGAAAACAATAACCT
TGGGGGGGGGGAGAGTTATATAAATAGAAAAAGGAGGGGGCAACTTAGAT
GGGTGGAATCTTTCAAAAAAAAAACACCAAACCTCTTATTAAAAAAATTA
CAATGCCCAAATAAAAAAAAGCTCCGCGGGGGACTCTCTCACCCCCCCCG
AGGAGTATTTCATGTGAAAATCAAGCAAAAAAAAGAAGAAGGGGGGCACC
CCCCATCATCACTAAACAACAAAGAAAAGGGGAGAAAAAAAAAGACACGC
GGAGCCAAATAAATTTTTCCGCACGAACAGAGA
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