EY676899

Overview
NameEY676899
Unique NameEY676899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length983
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig870 contig Csv1_Contig870:126..1108. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_BACC1 (tRNA modification GTPase mnmE OS=Bacillus cereus (strain ATCC 10987) GN=mnmE PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.497e-26
Identity = 62/160 (38.75%), Postives = 94/160 (58.75%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P+  TRE++VE+ CHG  V + +VL+  L  G  LA+PGEFT RAFLNGR+DLSQAE V  LI              ++G  S L+  +R   +E L  +E  +D+   D++  +  N++++K   +  ++   +ET+   K+L+ G+  AI GRPNVGK
Sbjct:   74 PRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAEPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDYPEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPNVGK 233          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_BACAN (tRNA modification GTPase mnmE OS=Bacillus anthracis GN=mnmE PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.497e-26
Identity = 62/160 (38.75%), Postives = 94/160 (58.75%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P+  TRE++VE+ CHG  V + +VL+  L  G  LA+PGEFT RAFLNGR+DLSQAE V  LI              ++G  S L+  +R   +E L  +E  +D+   D++  +  N++++K   +  ++   +ET+   K+L+ G+  AI GRPNVGK
Sbjct:   74 PRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAEPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDYPEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPNVGK 233          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_SYMTH (tRNA modification GTPase mnmE OS=Symbiobacterium thermophilum GN=mnmE PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 7.180e-26
Identity = 69/164 (42.07%), Postives = 95/164 (57.93%), Query Frame = 3
Query:   15 GPKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNLNL-VMDKIHA----MSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            GP   T EDVVELQCHG ++ +RRVL   L+AGA LA+PGEFT RAFLNGRLDLSQAE V  LI              ++G     +  +R + +E++  +EA +DF    P L L +   +++ A       +VE  +  A   ++L+ GL+  + GRPNVGK
Sbjct:   75 GPHSYTGEDVVELQCHGGQLAVRRVLEQALQAGARLAEPGEFTRRAFLNGRLDLSQAEAVVDLIRAKTDRAMAAAVAHLRGSLRQAIGRIRERLMEMMAHLEADIDF----PELELEVQTREEVAAGCAWCLGEVERLLGGARTGRILREGLRAVLAGRPNVGK 234          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_ALKMQ (tRNA modification GTPase mnmE OS=Alkaliphilus metalliredigens (strain QYMF) GN=mnmE PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 7.180e-26
Identity = 63/160 (39.38%), Postives = 94/160 (58.75%), Query Frame = 3
Query:   15 GPKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDE-MPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            GP   T EDVVE+ CHG  + ++R+L   L  GA  A  GEFT RAFLNGR+DL+QAE V  L+S             ++G  S  V  V+ + +++L  IE  +DF DE +  + L+L++ +   + + ++  +ETA+  K+L+ GL   I G+PNVGK
Sbjct:   77 GPHTYTTEDVVEINCHGGMIPVKRILELILRKGARAADAGEFTKRAFLNGRIDLAQAEAVMDLVSAKTDMGFDVALNQLEGSLSKRVKKVKDELLDMLAHIEVSIDFSDEDVDEVTLDLLLKQSMEIEKKIKVLLETADTGKILREGLNTVIVGKPNVGK 236          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_CLONN (tRNA modification GTPase mnmE OS=Clostridium novyi (strain NT) GN=mnmE PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 9.377e-26
Identity = 62/160 (38.75%), Postives = 94/160 (58.75%), Query Frame = 3
Query:   15 GPKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            GP+  T EDVVE+ CHG  V  +R+L   + AGA LA PGEFT RAFLNGR+DLSQAE V  LI+              +G  S  +  +R K +E++  IEA +D+ +D++  +      + +  +  ++++ ++ A+  K+L+ GL   I G+PNVGK
Sbjct:   77 GPRSFTAEDVVEINCHGGVVVTKRILEEVVAAGARLASPGEFTKRAFLNGRIDLSQAEAVIDLINAKTELSAKSALEQSEGKLSREIGKIRNKLLEIIASIEATVDYPEDDLEEVTSEKGRESVSKLLDEIDSLLDHADEGKILREGLNTVIVGKPNVGK 236          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_STAAB (tRNA modification GTPase mnmE OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=mnmE PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.225e-25
Identity = 58/160 (36.25%), Postives = 90/160 (56.25%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            PK  TRED++E+ CHG  + + RVL   +  GA LA+PGEFT RAFLNGR+DLSQAE V   +              I+G  S L+   R   +E+L ++E  +D+   D++       ++++   + Q++   ++T    K+++ GL   I G+PNVGK
Sbjct:   75 PKTFTREDIIEINCHGGILTINRVLELTMTYGARLAEPGEFTKRAFLNGRIDLSQAEAVMDFVRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDYPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKPNVGK 234          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_STAES (tRNA modification GTPase mnmE OS=Staphylococcus epidermidis (strain ATCC 12228) GN=mnmE PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.599e-25
Identity = 57/160 (35.62%), Postives = 91/160 (56.88%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            PK  TRED++E+ CHG  + + R+L   +  GA +A+PGE+T RAFLNGR+DLSQAE V   I              I+G  S L+   R   +E+L ++E  +D+   D++     + ++++   + +++   +ET    K+++ GL   I GRPNVGK
Sbjct:   75 PKTFTREDIIEINCHGGILTINRILELTMTYGARMAEPGEYTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDYPEYDDVEDATTDFLLEQSKRIKEEINQLLETGAQGKIMREGLSTVIVGRPNVGK 234          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_STAEQ (tRNA modification GTPase mnmE OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=mnmE PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.599e-25
Identity = 57/160 (35.62%), Postives = 91/160 (56.88%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            PK  TRED++E+ CHG  + + R+L   +  GA +A+PGE+T RAFLNGR+DLSQAE V   I              I+G  S L+   R   +E+L ++E  +D+   D++     + ++++   + +++   +ET    K+++ GL   I GRPNVGK
Sbjct:   75 PKTFTREDIIEINCHGGILTINRILELTMTYGARMAEPGEYTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDYPEYDDVEDATTDFLLEQSKRIKEEINQLLETGAQGKIMREGLSTVIVGRPNVGK 234          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_STAAW (tRNA modification GTPase mnmE OS=Staphylococcus aureus (strain MW2) GN=mnmE PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.599e-25
Identity = 58/160 (36.25%), Postives = 90/160 (56.25%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            PK  TRED++E+ CHG  + + RVL   +  GA +A+PGEFT RAFLNGR+DLSQAE V   I              I+G  S L+   R   +E+L ++E  +D+   D++       ++++   + Q++   ++T    K+++ GL   I G+PNVGK
Sbjct:   75 PKTFTREDIIEINCHGGILTINRVLELTMTYGARMAEPGEFTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDYPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKPNVGK 234          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_STAAT (tRNA modification GTPase mnmE OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=mnmE PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.599e-25
Identity = 58/160 (36.25%), Postives = 90/160 (56.25%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            PK  TRED++E+ CHG  + + RVL   +  GA +A+PGEFT RAFLNGR+DLSQAE V   I              I+G  S L+   R   +E+L ++E  +D+   D++       ++++   + Q++   ++T    K+++ GL   I G+PNVGK
Sbjct:   75 PKTFTREDIIEINCHGGILTINRVLELTMTYGARMAEPGEFTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDYPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKPNVGK 234          
The following BLAST results are available for this feature:
BLAST of EY676899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MNME_BACC15.497e-2638.75tRNA modification GTPase mnmE OS=Bacillus cereus (... [more]
MNME_BACAN5.497e-2638.75tRNA modification GTPase mnmE OS=Bacillus anthraci... [more]
MNME_SYMTH7.180e-2642.07tRNA modification GTPase mnmE OS=Symbiobacterium t... [more]
MNME_ALKMQ7.180e-2639.38tRNA modification GTPase mnmE OS=Alkaliphilus meta... [more]
MNME_CLONN9.377e-2638.75tRNA modification GTPase mnmE OS=Clostridium novyi... [more]
MNME_STAAB1.225e-2536.25tRNA modification GTPase mnmE OS=Staphylococcus au... [more]
MNME_STAES1.599e-2535.63tRNA modification GTPase mnmE OS=Staphylococcus ep... [more]
MNME_STAEQ1.599e-2535.63tRNA modification GTPase mnmE OS=Staphylococcus ep... [more]
MNME_STAAW1.599e-2536.25tRNA modification GTPase mnmE OS=Staphylococcus au... [more]
MNME_STAAT1.599e-2536.25tRNA modification GTPase mnmE OS=Staphylococcus au... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-028-D03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676899 ID=EY676899; Name=EY676899; organism=Citrus sinensis; type=EST; length=983bp
CCACGCGTCCGGTTGGCCCCAAGATCCTCACCCGTGAAGATGTGGTTGAG
CTTCAATGTCACGGCCCTGAAGTGTGTCTGCGCCGTGTGTTAAGAGCTTG
TTTAGAAGCTGGGGCGACCCTTGCTCAACCAGGCGAGTTCACTCTCCGCG
CCTTTCTCAATGGCCGCTTAGACCTATCTCAAGCTGAAAATGTTGAAAAG
TTAATTTCAGCAAAGTCTGTGGCTGCTGCAGATGCAGCTTTGGCAGGAAT
TCAGGGGGGCTTCTCTTCTTTGGTCACGTCAGTGAGAGCGAAGTGCATCG
AGTTGCTTACTGAGATTGAGGCTCGTTTAGATTTTGATGATGAGATGCCT
CCTCTCAATTTAAATCTGGTTATGGATAAAATACACGCAATGTCACAAGA
TGTGGAAAATGCCATGGAGACTGCCAATTATGACAAACTTCTGCAATCTG
GCTTACAAATAGCAATTGGCGGGCGACCAAATGTTGGGAAGTCTAGCCTT
CTTAATGCTTTGGAGCAAAATTGAGAGAACAATAGTTTACAAGAAAATTG
CCGGTACTACTCAAAAATGTCGTTGAAACCAATGGAAACATTATGTGGGT
GGACCTGGGGAAACTTCCTTGAAACCGCAGGGCTTAAAAAAAACTGAAAA
AAATTTGGGGAAAAAAATTGGTGGGGAAAAAGATCTGAAAACAATAACCT
TGGGGGGGGGGAGAGTTATATAAATAGAAAAAGGAGGGGGCAACTTAGAT
GGGTGGAATCTTTCAAAAAAAAAACACCAAACCTCTTATTAAAAAAATTA
CAATGCCCAAATAAAAAAAAGCTCCGCGGGGGACTCTCTCACCCCCCCCG
AGGAGTATTTCATGTGAAAATCAAGCAAAAAAAAGAAGAAGGGGGGCACC
CCCCATCATCACTAAACAACAAAGAAAAGGGGAGAAAAAAAAAGACACGC
GGAGCCAAATAAATTTTTCCGCACGAACAGAGA
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