EY676899

Overview
NameEY676899
Unique NameEY676899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length983
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig870 contig Csv1_Contig870:126..1108. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_STRA3 (tRNA modification GTPase mnmE OS=Streptococcus agalactiae serotype III GN=mnmE PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 6.078e-25
Identity = 61/162 (37.65%), Postives = 89/162 (54.94%), Query Frame = 3
Query:   12 VGPKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            + PK  TREDV+E+  HG       +L+  L  GA +A+PGEFT RAFLNGR+DL+QAE V  LI              + G   +L+ + R + +  L ++E  +D+   D++  +   L+ +K       +EN + TA   K+L+ GL  AI GRPNVGK
Sbjct:   76 LAPKTFTREDVIEINTHGGIAVTNEILQLILRHGARMAEPGEFTKRAFLNGRVDLTQAEAVMDLIRAKTDKAMDIAVKQLDGSLKTLINNTRQEILNTLAQVEVNIDYPEYDDVEEMTTTLMREKTQEFQALMENLLRTARRGKILREGLSTAIIGRPNVGK 237          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_STRA1 (tRNA modification GTPase mnmE OS=Streptococcus agalactiae serotype Ia GN=mnmE PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 6.078e-25
Identity = 61/162 (37.65%), Postives = 89/162 (54.94%), Query Frame = 3
Query:   12 VGPKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            + PK  TREDV+E+  HG       +L+  L  GA +A+PGEFT RAFLNGR+DL+QAE V  LI              + G   +L+ + R + +  L ++E  +D+   D++  +   L+ +K       +EN + TA   K+L+ GL  AI GRPNVGK
Sbjct:   76 LAPKTFTREDVIEINTHGGIAVTNEILQLILRHGARMAEPGEFTKRAFLNGRVDLTQAEAVMDLIRAKTDKAMDIAVKQLDGSLKTLINNTRQEILNTLAQVEVNIDYPEYDDVEEMTTTLMREKTQEFQALMENLLRTARRGKILREGLSTAIIGRPNVGK 237          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_CLOK5 (tRNA modification GTPase mnmE OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=mnmE PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 6.078e-25
Identity = 59/160 (36.88%), Postives = 95/160 (59.38%), Query Frame = 3
Query:   15 GPKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            GPK  T ED+VE+ CHG  +  R+V+   ++AGA LA+PGEFT RAFLNGR+DLSQAE V  +I               QG  S  +  +R + +E++  IEA +++ ++++  +  + +  KI+ +  ++   +  A   K+++ GL + I G+PNVGK
Sbjct:   77 GPKSYTAEDIVEINCHGGVLATRKVMEEVIKAGARLAEPGEFTKRAFLNGRIDLSQAEAVIDIIRAKSHISVKSAVQQSQGKISKEINLLREELLEIIAHIEATVNYPEEDLEEMTSDQIYLKINKILDEINYILSNAEEGKIVREGLSVVIVGKPNVGK 236          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_STRMU (tRNA modification GTPase mnmE OS=Streptococcus mutans GN=mnmE PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.037e-24
Identity = 61/160 (38.12%), Postives = 89/160 (55.62%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            PK  TREDV+E+  HG       +L+  L +GA +A PGEFT RAFLNGR+DL+QAE V  LI              + G  S+L+ + R + +  L ++E  +D+   D++  +   L+ +K       + N ++TA   K+L+ GL  AI GRPNVGK
Sbjct:   75 PKTFTREDVIEINTHGGVAVTNEILQLVLRSGARMADPGEFTKRAFLNGRVDLAQAEAVMDLIRAKTDKAMAVAVQQLDGSLSNLINNTRQEILNTLAQVEVNIDYPEYDDVEEMTTALMREKTQEFETLLTNLLKTARRGKILREGLSTAIIGRPNVGK 234          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_AQUAE (tRNA modification GTPase mnmE OS=Aquifex aeolicus GN=mnmE PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.037e-24
Identity = 63/159 (39.62%), Postives = 93/159 (58.49%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P   T ED+VEL  HG    L+R L   + AGA LA+PGEFT RAFLNG+LDL+QAE V +LIS             + G  S  +  +R   +ELL  +EA ++F ++++P L    V+  +  + + +   ++TA   K ++ G+++AI GRPNVGK
Sbjct:   70 PHSYTGEDMVELNLHGNPRILKRALELFVNAGARLAEPGEFTKRAFLNGKLDLTQAEAVAELISAKTELARKVALKQLHGELSKHIRPLRETLLELLAYVEADIEFAEEDIPTLTKEQVIQMVDKVIEGINELLKTAKTGKFIREGVKLAIVGRPNVGK 228          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_THEP1 (tRNA modification GTPase mnmE OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=mnmE PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.354e-24
Identity = 60/158 (37.97%), Postives = 93/158 (58.86%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            PK  T ED+VE+ CHG  + ++++L   L++GA +A+PGEFT RAFLNG++DL+ AE V  LI              ++GG    V S+R + IE+L EI   LD+ DE+   N   V+ ++  + + +   ++ A+   LL  G ++ I G+PNVGK
Sbjct:   68 PKSYTGEDMVEVMCHGGPLVVKKLLDLFLKSGARMAEPGEFTKRAFLNGKMDLTSAEAVRDLIEAKSETSLKLSLRNLKGGLKDFVESLRRELIEVLAEIRVELDYPDEI-ETNTGEVVTRLERIKEKLTKELKKADAGILLNRGFRMVIVGKPNVGK 224          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_STAS1 (tRNA modification GTPase mnmE OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=mnmE PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 1.354e-24
Identity = 56/160 (35.00%), Postives = 89/160 (55.62%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            PK  TRED+VE+ CHG  + + R+L   +  GA +A PGE+T RAFLNGR+DLSQAE V   I              I+G  S ++   R   +E+L ++E  +D+   D++      +++ K + +  ++   ++T    K+++ GL   I G+PNVGK
Sbjct:   75 PKTFTREDIVEINCHGGILTINRILELTMTYGARMADPGEYTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDMIKRQRQSILEILAQVEVNIDYPEYDDVEDATTEVLLGKSNEIKTEINKLLDTGTQGKIMREGLSTVIVGKPNVGK 234          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_SOLUE (tRNA modification GTPase mnmE OS=Solibacter usitatus (strain Ellin6076) GN=mnmE PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.354e-24
Identity = 62/159 (38.99%), Postives = 91/159 (57.23%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P+  T ED+VE+ CHG  V LR  +   LEAGA LA+PGEFTLRAFLNGR+DL +AE V  LI              ++G  S  +  ++ + +EL+  +EA +DF +D++       ++ ++  + +  E    +  Y  L+  GL +AI GRPNVGK
Sbjct:   71 PRSYTAEDLVEITCHGSPVVLRHAVERALEAGARLARPGEFTLRAFLNGRIDLPRAEAVRDLIDATTLYQARIAAQQVEGSVSRRIAPLKEQLLELIALLEAGIDFAEDDISVAPPAEILRRLSPVLEGTERLAASFQYGGLVHQGLTLAIVGRPNVGK 229          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_CLOAB (tRNA modification GTPase mnmE OS=Clostridium acetobutylicum GN=mnmE PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.354e-24
Identity = 62/160 (38.75%), Postives = 95/160 (59.38%), Query Frame = 3
Query:   15 GPKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            GPK  T E+VVE+ CHG     +RVL   + AGA LA+PGEFT RAFLNGRLDLSQAE V  +I+              +G  S  +  +R + +E++  IEA +D+ +D++  +    V   ++ + ++++  + +A+  K+L+ GL   I G+PNVGK
Sbjct:   77 GPKSFTGENVVEVNCHGGMYPTKRVLEEIIRAGARLAEPGEFTKRAFLNGRLDLSQAEAVMDIINSKTELSMKSAVAQSEGVISREINKLRQRILEIIAHIEATVDYPEDDLEEVTAENVSKDLNDILKEIDELILSADEGKILREGLNTVIIGKPNVGK 236          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_PSEMY (tRNA modification GTPase mnmE OS=Pseudomonas mendocina (strain ymp) GN=mnmE PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.768e-24
Identity = 65/160 (40.62%), Postives = 90/160 (56.25%), Query Frame = 3
Query:   15 GPKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            GP   T EDV+ELQ HG  V L  +LR CLE GA LA+PGEF+ RAFLN +LDL+QAE +  LI              +QG FS  V ++    I+L   +EA +DF ++E+  L    V+ ++  +  D+   +  A    LL+ G+ + I GRPN GK
Sbjct:   70 GPNSFTGEDVLELQGHGGPVVLDLLLRRCLELGARLARPGEFSERAFLNDKLDLAQAEAIADLIEASSEQAARNALRSLQGEFSKRVHALTESLIQLRIYVEAAIDFPEEEIDFLADGHVLSQLDGVRADLSTVLREAGQGALLRDGMTVVIAGRPNAGK 229          
The following BLAST results are available for this feature:
BLAST of EY676899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MNME_STRA36.078e-2537.65tRNA modification GTPase mnmE OS=Streptococcus aga... [more]
MNME_STRA16.078e-2537.65tRNA modification GTPase mnmE OS=Streptococcus aga... [more]
MNME_CLOK56.078e-2536.88tRNA modification GTPase mnmE OS=Clostridium kluyv... [more]
MNME_STRMU1.037e-2438.13tRNA modification GTPase mnmE OS=Streptococcus mut... [more]
MNME_AQUAE1.037e-2439.62tRNA modification GTPase mnmE OS=Aquifex aeolicus ... [more]
MNME_THEP11.354e-2437.97tRNA modification GTPase mnmE OS=Thermotoga petrop... [more]
MNME_STAS11.354e-2435.00tRNA modification GTPase mnmE OS=Staphylococcus sa... [more]
MNME_SOLUE1.354e-2438.99tRNA modification GTPase mnmE OS=Solibacter usitat... [more]
MNME_CLOAB1.354e-2438.75tRNA modification GTPase mnmE OS=Clostridium aceto... [more]
MNME_PSEMY1.768e-2440.63tRNA modification GTPase mnmE OS=Pseudomonas mendo... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-028-D03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676899 ID=EY676899; Name=EY676899; organism=Citrus sinensis; type=EST; length=983bp
CCACGCGTCCGGTTGGCCCCAAGATCCTCACCCGTGAAGATGTGGTTGAG
CTTCAATGTCACGGCCCTGAAGTGTGTCTGCGCCGTGTGTTAAGAGCTTG
TTTAGAAGCTGGGGCGACCCTTGCTCAACCAGGCGAGTTCACTCTCCGCG
CCTTTCTCAATGGCCGCTTAGACCTATCTCAAGCTGAAAATGTTGAAAAG
TTAATTTCAGCAAAGTCTGTGGCTGCTGCAGATGCAGCTTTGGCAGGAAT
TCAGGGGGGCTTCTCTTCTTTGGTCACGTCAGTGAGAGCGAAGTGCATCG
AGTTGCTTACTGAGATTGAGGCTCGTTTAGATTTTGATGATGAGATGCCT
CCTCTCAATTTAAATCTGGTTATGGATAAAATACACGCAATGTCACAAGA
TGTGGAAAATGCCATGGAGACTGCCAATTATGACAAACTTCTGCAATCTG
GCTTACAAATAGCAATTGGCGGGCGACCAAATGTTGGGAAGTCTAGCCTT
CTTAATGCTTTGGAGCAAAATTGAGAGAACAATAGTTTACAAGAAAATTG
CCGGTACTACTCAAAAATGTCGTTGAAACCAATGGAAACATTATGTGGGT
GGACCTGGGGAAACTTCCTTGAAACCGCAGGGCTTAAAAAAAACTGAAAA
AAATTTGGGGAAAAAAATTGGTGGGGAAAAAGATCTGAAAACAATAACCT
TGGGGGGGGGGAGAGTTATATAAATAGAAAAAGGAGGGGGCAACTTAGAT
GGGTGGAATCTTTCAAAAAAAAAACACCAAACCTCTTATTAAAAAAATTA
CAATGCCCAAATAAAAAAAAGCTCCGCGGGGGACTCTCTCACCCCCCCCG
AGGAGTATTTCATGTGAAAATCAAGCAAAAAAAAGAAGAAGGGGGGCACC
CCCCATCATCACTAAACAACAAAGAAAAGGGGAGAAAAAAAAAGACACGC
GGAGCCAAATAAATTTTTCCGCACGAACAGAGA
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