EY676897

Overview
NameEY676897
Unique NameEY676897
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY676897 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.665e-27
Identity = 41/65 (63.08%), Postives = 50/65 (76.92%), Query Frame = 1
Query:   31 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSTNDINAGRLPGYGLTTNIINGGIECGYVGNDAV 225
            VLSFK+A+WFWMT Q PKPSCH+V+   W+PS  D  AGRLPGYG+ TN++NGG+ECG   N  V
Sbjct:  148 VLSFKTALWFWMTPQAPKPSCHDVLTGRWQPSAADTAAGRLPGYGVLTNLLNGGLECGKGPNPQV 212          

HSP 2 Score: 44.669 bits (104), Expect = 7.665e-27
Identity = 16/30 (53.33%), Postives = 23/30 (76.67%), Query Frame = 2
Query:  230 NRIGFFTTFCGKFGIQPGDNLDCSNRRPYG 319
            +R+GFF  +CG  G+  G+NLDC N+RP+G
Sbjct:  214 DRLGFFRRYCGLLGVGTGNNLDCYNQRPFG 243          
BLAST of EY676897 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 9.912e-27
Identity = 41/60 (68.33%), Postives = 50/60 (83.33%), Query Frame = 1
Query:   25 NPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSTNDINAGRLPGYGLTTNIINGGIECG 204
            +PV+SFK+A+WFWMT Q PKPSCH+VII  W PS+ D  A RLPG+G+ TNIINGG+ECG
Sbjct:  223 DPVISFKTALWFWMTPQSPKPSCHDVIIGRWNPSSADRAANRLPGFGVITNIINGGLECG 282          

HSP 2 Score: 42.743 bits (99), Expect = 9.912e-27
Identity = 16/30 (53.33%), Postives = 22/30 (73.33%), Query Frame = 2
Query:  230 NRIGFFTTFCGKFGIQPGDNLDCSNRRPYG 319
            +RIGF+  +C   G+ PGDNLDC N+R +G
Sbjct:  291 DRIGFYRRYCSILGVTPGDNLDCVNQRWFG 320          
BLAST of EY676897 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.190e-26
Identity = 41/63 (65.08%), Postives = 49/63 (77.78%), Query Frame = 1
Query:   25 NPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSTNDINAGRLPGYGLTTNIINGGIECGYVG 213
            +P ++FK+A+WFWMT Q PKPSCH VI + W PS  D  AGR+PGYG+ TNIINGGIECG  G
Sbjct:  195 DPFIAFKTALWFWMTPQSPKPSCHAVITESWTPSAADSEAGRVPGYGVITNIINGGIECGQGG 257          

HSP 2 Score: 41.9726 bits (97), Expect = 2.190e-26
Identity = 16/30 (53.33%), Postives = 20/30 (66.67%), Query Frame = 2
Query:  230 NRIGFFTTFCGKFGIQPGDNLDCSNRRPYG 319
            NRIGF+ T+C   G   G NLDC  +RP+G
Sbjct:  264 NRIGFYKTYCDSLGTTYGSNLDCYQQRPFG 293          
BLAST of EY676897 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.847e-26
Identity = 44/66 (66.67%), Postives = 54/66 (81.82%), Query Frame = 1
Query:   25 NPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSTNDINAGRLPGYGLTTNIINGGIECGYVGNDA 222
            +PV++FK+AIWFWMT Q PKPSCH VI+ +W+PS  D  AGR+PGYG+ TNIINGG+ECG  G DA
Sbjct:  215 DPVIAFKAAIWFWMTPQSPKPSCHAVIVGQWQPSDADRAAGRVPGYGVITNIINGGLECGR-GQDA 279          

HSP 2 Score: 39.2762 bits (90), Expect = 2.847e-26
Identity = 14/29 (48.28%), Postives = 20/29 (68.97%), Query Frame = 2
Query:  230 NRIGFFTTFCGKFGIQPGDNLDCSNRRPY 316
            +RIGF+  +C   G+ PG NLDC N+R +
Sbjct:  283 DRIGFYQRYCNILGVNPGGNLDCYNQRSF 311          
BLAST of EY676897 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 3.702e-26
Identity = 44/69 (63.77%), Postives = 52/69 (75.36%), Query Frame = 1
Query:   25 NPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSTNDINAGRLPGYGLTTNIINGGIECGYVGNDAVRK 231
            +PV+SFK+AIWFWM  Q PKPSCH VI   W PS  D+ AGR+PGYG+ TNIINGGIECG  G +A  +
Sbjct:  232 DPVISFKTAIWFWMKPQSPKPSCHAVITGNWTPSAADLEAGRVPGYGVITNIINGGIECGQGGPNAANE 300          

HSP 2 Score: 37.7354 bits (86), Expect = 3.702e-26
Identity = 14/30 (46.67%), Postives = 19/30 (63.33%), Query Frame = 2
Query:  230 NRIGFFTTFCGKFGIQPGDNLDCSNRRPYG 319
            +RIGF+  +C   G   G NLDC  +RP+G
Sbjct:  301 DRIGFYKKYCDSLGTTYGSNLDCYQQRPFG 330          
BLAST of EY676897 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.705e-26
Identity = 43/63 (68.25%), Postives = 50/63 (79.37%), Query Frame = 1
Query:   16 LPLNPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSTNDINAGRLPGYGLTTNIINGGIECG 204
            L  +P +SFKSA WFWMT Q PKPSCH VII  W PS++D  AGR+PGYG+ TNIINGG+ECG
Sbjct:  216 LSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRVPGYGVITNIINGGLECG 278          

HSP 2 Score: 38.891 bits (89), Expect = 3.705e-26
Identity = 14/30 (46.67%), Postives = 21/30 (70.00%), Query Frame = 2
Query:  230 NRIGFFTTFCGKFGIQPGDNLDCSNRRPYG 319
            +RIGF+  +C   G+  G+NLDC N+ P+G
Sbjct:  287 DRIGFYKRYCDILGVSYGNNLDCYNQSPFG 316          
BLAST of EY676897 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 4.824e-26
Identity = 41/64 (64.06%), Postives = 49/64 (76.56%), Query Frame = 1
Query:   34 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSTNDINAGRLPGYGLTTNIINGGIECGYVGNDAV 225
            +SFK+A WFWMT Q PKPSCH VI  +W PS +D  AGR+PGYG  TNIINGG+ECG+  +D V
Sbjct:  224 VSFKTAFWFWMTPQSPKPSCHAVITGQWTPSADDQAAGRVPGYGEITNIINGGVECGHGADDKV 287          

HSP 2 Score: 43.1282 bits (100), Expect = 4.824e-26
Identity = 16/29 (55.17%), Postives = 21/29 (72.41%), Query Frame = 2
Query:  230 NRIGFFTTFCGKFGIQPGDNLDCSNRRPY 316
            +RIGF+  +C   G+  GDNLDC N+RPY
Sbjct:  289 DRIGFYKRYCDMLGVSYGDNLDCYNQRPY 317          
BLAST of EY676897 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.064e-25
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 1
Query:   16 LPLNPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSTNDINAGRLPGYGLTTNIINGGIECGYVGNDAV 225
            L  +P +SFKSA WFWMT Q PKPSCH+VII  W PS +D  AGR+PG+GL TNIINGG+ECG   N  V
Sbjct:  213 LATDPTISFKSAFWFWMTPQSPKPSCHDVIIGAWSPSGSDQAAGRVPGFGLITNIINGGLECGQGWNAKV 282          

HSP 2 Score: 37.3502 bits (85), Expect = 1.064e-25
Identity = 14/29 (48.28%), Postives = 20/29 (68.97%), Query Frame = 2
Query:  230 NRIGFFTTFCGKFGIQPGDNLDCSNRRPY 316
            +RIGF+  +C   G+  G+NLDC N+R Y
Sbjct:  284 DRIGFYKRYCDTLGVGYGNNLDCYNQRSY 312          
BLAST of EY676897 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.385e-25
Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 1
Query:   16 LPLNPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSTNDINAGRLPGYGLTTNIINGGIECGY 207
            L  NP +SFK+AIWFWMT Q  KPS H+VI   W PS  D +AGR+PGYG+ TNIINGGIECG+
Sbjct:  220 LSTNPTVSFKTAIWFWMTPQANKPSSHDVITGRWTPSAADSSAGRVPGYGVITNIINGGIECGH 283          

HSP 2 Score: 41.5874 bits (96), Expect = 1.385e-25
Identity = 14/29 (48.28%), Postives = 22/29 (75.86%), Query Frame = 2
Query:  230 NRIGFFTTFCGKFGIQPGDNLDCSNRRPY 316
            +R+GF+  +C  FG+ PG NLDC+N+R +
Sbjct:  291 DRVGFYKRYCQIFGVDPGGNLDCNNQRSF 319          
BLAST of EY676897 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.068e-25
Identity = 41/60 (68.33%), Postives = 53/60 (88.33%), Query Frame = 1
Query:   25 NPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSTNDINAGRLPGYGLTTNIINGGIECG 204
            +PV++F++AIWFWMTAQ PKPSCH+VI ++W PS +D ++GRLPGYG+ TNIINGG ECG
Sbjct:  156 DPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDDRSSGRLPGYGMATNIINGGEECG 215          

HSP 2 Score: 35.8094 bits (81), Expect = 3.068e-25
Identity = 11/30 (36.67%), Postives = 21/30 (70.00%), Query Frame = 2
Query:  230 NRIGFFTTFCGKFGIQPGDNLDCSNRRPYG 319
            +R+G++  +C  F +  GDN+ C +++PYG
Sbjct:  225 DRVGYYKRYCDMFRVGYGDNIACRDQKPYG 254          
The following BLAST results are available for this feature:
BLAST of EY676897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CHIT_CARPA7.665e-2763.08Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHIT_SOLTU9.912e-2768.33Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHIB_POPTR2.190e-2665.08Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHI2_BRANA2.847e-2666.67Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHI6_POPTR3.702e-2663.77Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHI1_GOSHI3.705e-2668.25Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI3_ORYSJ4.824e-2664.06Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI1_THECC1.064e-2564.29Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHIX_PEA1.385e-2565.63Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI11_ORYSJ3.068e-2568.33Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-028-D01-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676897 ID=EY676897; Name=EY676897; organism=Citrus sinensis; type=EST; length=858bp
CCACGCGTCCGCTAATTGCCACTGAATCCAGTACTATCATTCAAGTCAGC
AATCTGGTTCTGGATGACTGCACAGCCACCAAAGCCATCGTGCCACGAAG
TCATTATCGACGAATGGAAACCATCAACAAATGACATAAACGCCGGCCGG
CTTCCGGGATACGGTCTAACCACAAATATAATCAACGGTGGAATTGAATG
TGGCTACGTTGGGAATGACGCTGTACGTAAACCGTATTGGGTTCTTTACC
ACTTTCTGTGGCAAGTTTGGGATTCAACCTGGTGACAATCTTGATTGCTC
CAACCGACGGCCTTATGGCCTTAATCAGATGGCACAATCAATGTGATCAT
CATGATCAACGTTTTAATAAAATAAGACTAATAAAAGCTACTTAGTGAAA
ACTTTAGATGTCACACTTGTAGGTAGGACAACTAAGCTGTTTACGCCCAT
ATTGAAAATAAATATAAATAAAAATGATCGAACAATGGGTAAATAGAAGC
TTCTCCAGAAAAAAACAAAAAAAAGAGGCGAGCGCGACAAAGAAACCAAG
CTTTAAGTAGAAGGGCGAGCAAATGAGCAAAAGTCTTATATATGTCAACA
AAATTCAAATACGCAGGGACAGAGGTATACAGAAAAATGGGGGGAAAAAG
CAGAGCATTACAATTATAAGAAACCTTAAGAACAGACACTCCTTATACGA
CGATGAGAAAGAATGAGAAAAGGCAAAAGAAGGAGACTCTTAAAACAATT
ATACAATAAAAAATAGGTAAAAGAACCACGCCCGATGACAGGAGCAAAAA
AACAAAAAAGGGATGCAAGACAACAAAAGAGAAATGAAAAAAAATGAAAA
CAGGACAA
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