EY676888

Overview
NameEY676888
Unique NameEY676888
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length994
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY676888 vs. ExPASy Swiss-Prot
Match: PYRC_PEDPA (Dihydroorotase OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=pyrC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.879e-11
Identity = 51/189 (26.98%), Postives = 86/189 (45.50%), Query Frame = 3
Query:    3 MEEIAHARKAGQRVIGEPAVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRIDTNVYEGRKVKGKVEVTNAGG 569
            +E I  A++ G  V  E A   L LD++ +   + +      M+PP+R     +AL   L  G + ++ TDH       KA      +    G+ G+E    L++  +V+ G  +V   V   S + A IFN+    G + VG  AD+ + N    +EI      S+   + + G+KV G+ ++T   G
Sbjct:  237 VELIRRAQRDGVHVTAEVAPHHLFLDETMISMDNPMMK----MNPPLRTLEDRQALLGGLLDGTIGMIATDHAPHTVKDKA---GSMKTASFGITGLETAFPLLYTKLVKPGLCTVEQLVEWMSIQPAEIFNL-KAAGQLEVGDVADLTVMNVEDEYEIKEADFASKGINSPFIGQKVYGQTQLTMVAG 417          
BLAST of EY676888 vs. ExPASy Swiss-Prot
Match: ALLB_STRAW (Allantoinase OS=Streptomyces avermitilis GN=allB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.879e-11
Identity = 45/148 (30.41%), Postives = 70/148 (47.30%), Query Frame = 3
Query:  114 AAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRIDTNVYEGRKVKGKVEVT 557
            A+++   PPIR + +   L  ALA G +  V TDH    +  K    DDF     G++G++  +  +W      G  S+ D VR  S   AR+  +  +KGAI  G DAD  +  P+ +F +   +   R     Y G+ + G V+ T
Sbjct:  278 ASEFKCCPPIREAANQDLLWQALADGTIDCVVTDHSPSTADLKT---DDFATAWGGISGLQLSLPAIWTEARRRGH-SLEDVVRWMSARTARLVGL-AQKGAIEAGRDADFAVLAPDETFTVDPAALQHRNRVTAYAGKTLSGVVKST 420          
BLAST of EY676888 vs. ExPASy Swiss-Prot
Match: PYRC_GEOBB (Dihydroorotase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=pyrC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.067e-11
Identity = 52/186 (27.96%), Postives = 91/186 (48.92%), Query Frame = 3
Query:   12 IAHARKAGQRVIGEPAVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRIDTNVYEGRKVKGKVEVTNAGG 569
            I +A+  G +V  E A     L D  +    + T AK  M+PP+R++   +A++A LA G +  + TDH   +  +K     +F    NG+ G+E  + L    +VE G++ +   V L S   A+I  +   +G + VG+  D+ I +P   +++ A    S+   + + G K+KG+   T   G
Sbjct:  243 IRNAKARGVKVTCETAPHYFTLTDEAV--RGYETNAK--MNPPLRSAADVEAMKAGLADGTIDAIATDHAPHHPDEKDV---EFNVALNGIVGLETSLSLSL-KLVEEGRLDLNQLVSLMSCTPAKILGL--DRGTLKVGAVGDVTIIDPAKEWQVEAAKLESKSKNSPFLGWKMKGRAVYTVVKG 418          
BLAST of EY676888 vs. ExPASy Swiss-Prot
Match: PYRC_ENTFA (Dihydroorotase OS=Enterococcus faecalis GN=pyrC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.067e-11
Identity = 53/197 (26.90%), Postives = 86/197 (43.65%), Query Frame = 3
Query:   12 IAHARKAGQRVIGEPAVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRIDTNVYEGRKVKGKVEVTNAGGGLFGKWMTEGR 602
            I  A+KAG  V  E +   L+L D  +   +      + M+PP+R     +AL   L  G +  + TDH      +K      F   P G+ G E    L++   VE+G  ++   +   + + A IF +    G + +G+ ADI +F+  ++  I A +  S      + G  VKGK  +T   G L   W  E +
Sbjct:  242 IRDAKKAGIHVTAEVSPHHLILVDEDIPGDE----GFWKMNPPLRGLADRQALIDGLLDGTIDCIATDHAPHGLEEKQ---QSFLNAPFGIVGSETAFQLIYTNFVETGIFTLEQVIDWMAVKPAEIFGL--NAGTLTIGAPADIAVFDLATAAPIDAEAFESMAVNTPFTGWTVKGKTLMTFVDGAL--AWSEEAQ 427          
BLAST of EY676888 vs. ExPASy Swiss-Prot
Match: ALLB_SALTY (Allantoinase OS=Salmonella typhimurium GN=allB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.067e-11
Identity = 53/185 (28.65%), Postives = 85/185 (45.95%), Query Frame = 3
Query:    3 MEEIAHARKAGQRVIGEPAVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRIDTNVYEGRKVKGKVEVT 557
            +EE+  AR+ GQ V  E      VLD       +  T AK   SPPIR   + K +   L  G +  + +DH       KA  I    +   G+ G++  M +++D  V+   +S+  + +L +T  A IF +   KG I  G DAD++   P+SS+ +       R   + Y GR +  ++  T
Sbjct:  249 VEEVTRARQEGQDVTCESCPHYFVLDTDQF--EEIGTLAK--CSPPIRDQENQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNI---MQAWGGIAGLQNCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGL-KHKGRIAPGKDADLVFIQPDSSYVLKNEDLEYRHKVSPYVGRTIGARITKT 425          
BLAST of EY676888 vs. ExPASy Swiss-Prot
Match: ALLB_SALTI (Allantoinase OS=Salmonella typhi GN=allB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.067e-11
Identity = 53/185 (28.65%), Postives = 85/185 (45.95%), Query Frame = 3
Query:    3 MEEIAHARKAGQRVIGEPAVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRIDTNVYEGRKVKGKVEVT 557
            +EE+  AR+ GQ V  E      VLD       +  T AK   SPPIR   + K +   L  G +  + +DH       KA  I    +   G+ G++  M +++D  V+   +S+  + +L +T  A IF +   KG I  G DAD++   P+SS+ +       R   + Y GR +  ++  T
Sbjct:  249 VEEVTRARQEGQDVTCESCPHYFVLDTDQF--EEIGTLAK--CSPPIRDQENQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNI---MQAWGGIAGLQNCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGL-KHKGRIAPGKDADLVFIQPDSSYVLKNEDLEYRHKVSPYVGRTIGARITKT 425          
BLAST of EY676888 vs. ExPASy Swiss-Prot
Match: ALLB_SALPK (Allantoinase OS=Salmonella paratyphi A (strain AKU_12601) GN=allB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.067e-11
Identity = 53/185 (28.65%), Postives = 85/185 (45.95%), Query Frame = 3
Query:    3 MEEIAHARKAGQRVIGEPAVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRIDTNVYEGRKVKGKVEVT 557
            +EE+  AR+ GQ V  E      VLD       +  T AK   SPPIR   + K +   L  G +  + +DH       KA  I    +   G+ G++  M +++D  V+   +S+  + +L +T  A IF +   KG I  G DAD++   P+SS+ +       R   + Y GR +  ++  T
Sbjct:  249 VEEVTRARQEGQDVTCESCPHYFVLDTDQF--EEIGTLAK--CSPPIRDQENQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNI---MQAWGGIAGLQNCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGL-KHKGRIAPGKDADLVFIQPDSSYVLKNEDLEYRHKVSPYVGRTIGARITKT 425          
BLAST of EY676888 vs. ExPASy Swiss-Prot
Match: ALLB_SALPA (Allantoinase OS=Salmonella paratyphi A GN=allB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.067e-11
Identity = 53/185 (28.65%), Postives = 85/185 (45.95%), Query Frame = 3
Query:    3 MEEIAHARKAGQRVIGEPAVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRIDTNVYEGRKVKGKVEVT 557
            +EE+  AR+ GQ V  E      VLD       +  T AK   SPPIR   + K +   L  G +  + +DH       KA  I    +   G+ G++  M +++D  V+   +S+  + +L +T  A IF +   KG I  G DAD++   P+SS+ +       R   + Y GR +  ++  T
Sbjct:  249 VEEVTRARQEGQDVTCESCPHYFVLDTDQF--EEIGTLAK--CSPPIRDQENQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNI---MQAWGGIAGLQNCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGL-KHKGRIAPGKDADLVFIQPDSSYVLKNEDLEYRHKVSPYVGRTIGARITKT 425          
BLAST of EY676888 vs. ExPASy Swiss-Prot
Match: ALLB_SALNS (Allantoinase OS=Salmonella newport (strain SL254) GN=allB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.067e-11
Identity = 53/185 (28.65%), Postives = 85/185 (45.95%), Query Frame = 3
Query:    3 MEEIAHARKAGQRVIGEPAVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRIDTNVYEGRKVKGKVEVT 557
            +EE+  AR+ GQ V  E      VLD       +  T AK   SPPIR   + K +   L  G +  + +DH       KA  I    +   G+ G++  M +++D  V+   +S+  + +L +T  A IF +   KG I  G DAD++   P+SS+ +       R   + Y GR +  ++  T
Sbjct:  249 VEEVTRARQEGQDVTCESCPHYFVLDTDQF--EEIGTLAK--CSPPIRDQENQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNI---MQAWGGIAGLQNCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGL-KHKGRIAPGKDADLVFIQPDSSYVLKNEDLEYRHKVSPYVGRTIGARITKT 425          
BLAST of EY676888 vs. ExPASy Swiss-Prot
Match: ALLB_SALHS (Allantoinase OS=Salmonella heidelberg (strain SL476) GN=allB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.067e-11
Identity = 53/185 (28.65%), Postives = 85/185 (45.95%), Query Frame = 3
Query:    3 MEEIAHARKAGQRVIGEPAVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRIDTNVYEGRKVKGKVEVT 557
            +EE+  AR+ GQ V  E      VLD       +  T AK   SPPIR   + K +   L  G +  + +DH       KA  I    +   G+ G++  M +++D  V+   +S+  + +L +T  A IF +   KG I  G DAD++   P+SS+ +       R   + Y GR +  ++  T
Sbjct:  249 VEEVTRARQEGQDVTCESCPHYFVLDTDQF--EEIGTLAK--CSPPIRDQENQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNI---MQAWGGIAGLQNCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGL-KHKGRIAPGKDADLVFIQPDSSYVLKNEDLEYRHKVSPYVGRTIGARITKT 425          
The following BLAST results are available for this feature:
BLAST of EY676888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
PYRC_PEDPA3.879e-1126.98Dihydroorotase OS=Pediococcus pentosaceus (strain ... [more]
ALLB_STRAW3.879e-1130.41Allantoinase OS=Streptomyces avermitilis GN=allB P... [more]
PYRC_GEOBB5.067e-1127.96Dihydroorotase OS=Geobacter bemidjiensis (strain B... [more]
PYRC_ENTFA5.067e-1126.90Dihydroorotase OS=Enterococcus faecalis GN=pyrC PE... [more]
ALLB_SALTY5.067e-1128.65Allantoinase OS=Salmonella typhimurium GN=allB PE=... [more]
ALLB_SALTI5.067e-1128.65Allantoinase OS=Salmonella typhi GN=allB PE=3 SV=1[more]
ALLB_SALPK5.067e-1128.65Allantoinase OS=Salmonella paratyphi A (strain AKU... [more]
ALLB_SALPA5.067e-1128.65Allantoinase OS=Salmonella paratyphi A GN=allB PE=... [more]
ALLB_SALNS5.067e-1128.65Allantoinase OS=Salmonella newport (strain SL254) ... [more]
ALLB_SALHS5.067e-1128.65Allantoinase OS=Salmonella heidelberg (strain SL47... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-028-C03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676888 ID=EY676888; Name=EY676888; organism=Citrus sinensis; type=EST; length=994bp
CAATGGAAGAAATAGCTCATGCTCGAAAAGCAGGGCAGAGGGTCATTGGA
GAGCCCGCAGTTTCTGGATTAGTCCTTGATGATTCTTGGCTTTGGCATTC
AGATTTTGTCACTGCTGCAAAGTATGTCATGAGTCCCCCTATTAGAGCAT
CAGGACACAACAAGGCTCTACAAGCTGCCCTTGCAACTGGGATTTTGCAG
CTTGTAGGAACTGATCATTGTGCCTTTAATTCTACACAAAAGGCTTTTGG
TATTGATGATTTCCGGAAGATACCAAATGGTGTGAATGGTATCGAAGAGA
GGATGCATTTGGTCTGGGATACAATGGTGGAATCTGGCCAAATTTCTGTG
ACTGATTATGTCAGGTTAACTAGCACTGAATGTGCTAGAATATTCAACGT
ATATCCCAGAAAAGGAGCAATTCTTGTTGGATCTGATGCAGATATAATTA
TATTCAACCCAAATTCAAGCTTTGAAATTACTGCAAGGTCCCACCACTCT
AGAATAGATACAAATGTCTATGAAGGCAGGAAAGTAAAAGGGAAAGTTGA
AGTGACGAATGCTGGGGGCGGGTTGTTTGGGAAATGGATGACTGAAGGCC
GTTCCAGGTCCGGAAATTTCAAAAAAGGCGTCCCTTTATTATCTTTTTCT
GGGAATTGAAAAAGCCGAAGGTAATTTTTTTTTCTTCCCCCCAAGCCCCA
GGGAACGGTCTTAACCCCTCACCTAAAATTACGGGTTTTAACCTTTTTTT
TTTTTTTTTCATTTTGTGGTACAAAAATTTAAAAGGAAAAACCCGCCCCC
CATGGTCTAAAATTTTGGTGTTAGGCTTGGGAACTTTTAAAAAAAAAAAA
TTTCATCCTTGTTTTTTCCCCCCCCGGGGGAAACAAAAAAAAAAAAAAAA
CACGCGGCCCCCATCCTCATTTTTTTTAAAAAAAAAAGATATTTGACCCA
CGGGTGGTAATTAAAAAAATATTTTTTTTTTTTTTTTTTTACAA
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