EY676881

Overview
NameEY676881
Unique NameEY676881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1000
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY676881 vs. ExPASy Swiss-Prot
Match: CCNC_AEDAE (Cyclin-C OS=Aedes aegypti GN=CycC PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.044e-30
Identity = 47/100 (47.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:   19 MAANFWTSSHYKQ-LLDQEDVDVAQPLDREKGITVEDYKLIKMQMSNYISKLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEE 315
            MA NFW SSH++Q +LD++D+   +  D  K +T E+Y+ I M  +N I  L + +K+RQ+V+ATA  Y +R Y R S+   DP L+APTC+ LASK EE
Sbjct:    1 MAGNFWQSSHHQQWILDKQDLIRERQHDL-KNLTEEEYQKIFMFFANVIQVLGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCILLASKVEE 99          

HSP 2 Score: 67.3958 bits (163), Expect = 1.044e-30
Identity = 31/84 (36.90%), Postives = 53/84 (63.10%), Query Frame = 2
Query:  359 YILNEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNEINMTPLSWEILNDT*KMDLILGHPPHLMALACIYI 610
            Y   +++ Y    ILE E  +LE L+  L+V+ PYR L+Q +QD G  +  +T L+W ++ND+ + D+ L +PP+ +A+ C+ I
Sbjct:  122 YAYQQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLIQDIGQEDQLLT-LTWRLINDSLRTDVSLLYPPYQIAIGCLQI 204          
BLAST of EY676881 vs. ExPASy Swiss-Prot
Match: CCNC_DICDI (Cyclin-C OS=Dictyostelium discoideum GN=cycC PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.308e-30
Identity = 45/115 (39.13%), Postives = 69/115 (60.00%), Query Frame = 1
Query:   19 MAANFWTSSHYKQ-LLDQEDVDVAQPLDREKGITVEDYKLIKMQMSNYISKLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKI 360
            MAANFW SSH  + LLD+  ++ + P D++  +T  + K ++      I  L   +K+RQR ++TA+ Y +R Y + S  + +P LVA TCLYL+SK EE   QA+     +K+I
Sbjct:    1 MAANFWESSHCTEWLLDRNKIEESNPKDKQY-LTPIELKKLRTHYCFVIQNLGNALKLRQRAISTAIVYFKRFYLKNSFVDCEPRLVAVTCLYLSSKVEECITQAKKCAAKMKEI 114          

HSP 2 Score: 69.3218 bits (168), Expect = 2.308e-30
Identity = 30/83 (36.14%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  365 LNEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNEINMTPLSWEILNDT*KMDLILGHPPHLMALACIYIG 613
            ++  + Y + DILE E  +LE L++ L+++HPY+SL  +LQ +G++  ++  + W I+ND+ + D+ L +PP ++ L CI +G
Sbjct:  114 IDHSFNYLMNDILECEFFVLEELDFCLIIYHPYKSLPFYLQSSGLDPASI-EIIWGIVNDSYRTDVCLLYPPFVVGLGCILLG 195          
BLAST of EY676881 vs. ExPASy Swiss-Prot
Match: CCNC_ANOGA (Cyclin-C OS=Anopheles gambiae GN=CycC PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.632e-30
Identity = 44/100 (44.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:   19 MAANFWTSSHYKQ-LLDQEDVDVAQPLDREKGITVEDYKLIKMQMSNYISKLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEE 315
            MA NFW SSH++Q +LD++D+   +  D  K ++ E+Y+ + M  +N I  L + +K+RQ+V+ATA  Y +R Y R S+   DP L+APTC+ L+SK EE
Sbjct:    1 MAGNFWQSSHHQQWILDKQDLIRERQHDL-KTLSEEEYQKLFMFFANIIQVLGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCILLSSKVEE 99          

HSP 2 Score: 68.5514 bits (166), Expect = 8.632e-30
Identity = 32/84 (38.10%), Postives = 53/84 (63.10%), Query Frame = 2
Query:  359 YILNEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNEINMTPLSWEILNDT*KMDLILGHPPHLMALACIYI 610
            Y   +++ Y    ILE E  +LE L+  L+V+ PYR L+Q +QD G  E  +T L+W ++ND+ + D+ L +PP+ +A+ C+ I
Sbjct:  122 YAYQQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLMQDIGQEEQLLT-LTWRLINDSLRTDVSLLYPPYQIAIGCLQI 204          
BLAST of EY676881 vs. ExPASy Swiss-Prot
Match: CCNC_DROPS (Cyclin-C OS=Drosophila pseudoobscura pseudoobscura GN=CycC PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.230e-29
Identity = 42/100 (42.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:   19 MAANFWTSSHYKQ-LLDQEDVDVAQPLDREKGITVEDYKLIKMQMSNYISKLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEE 315
            MA NFW SSH +Q +LD++D+   +  D    +  ++Y+ + +  +N I  L + +K+RQ+V+ATA  Y +R Y R S+   DP L+APTC+ LASK EE
Sbjct:    1 MAGNFWQSSHSQQWILDKQDLLRERQHDL-LSLNEDEYQKVFIFFANVIQVLGEQLKLRQQVIATATVYFKRFYARNSLKNIDPLLLAPTCILLASKVEE 99          

HSP 2 Score: 70.4774 bits (171), Expect = 3.230e-29
Identity = 34/84 (40.48%), Postives = 54/84 (64.29%), Query Frame = 2
Query:  359 YILNEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNEINMTPLSWEILNDT*KMDLILGHPPHLMALACIYI 610
            Y   +++ Y    ILE E  +LE L+  L+V+ PYR L+Q +QD G  +  +T LSW I+ND+ + D+ L +PP+ +A+AC+ I
Sbjct:  122 YAYTQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDMGQEDQLLT-LSWRIVNDSLRTDVCLLYPPYQIAIACLQI 204          
BLAST of EY676881 vs. ExPASy Swiss-Prot
Match: CCNC_DROME (Cyclin-C OS=Drosophila melanogaster GN=CycC PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.209e-28
Identity = 42/100 (42.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:   19 MAANFWTSSHYKQ-LLDQEDVDVAQPLDREKGITVEDYKLIKMQMSNYISKLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEE 315
            MA NFW SSH +Q +LD+ D+   +  D    +  ++Y+ + +  +N I  L + +K+RQ+V+ATA  Y +R Y R S+   DP L+APTC+ LASK EE
Sbjct:    1 MAGNFWQSSHSQQWILDKPDLLRERQHDL-LALNEDEYQKVFIFFANVIQVLGEQLKLRQQVIATATVYFKRFYARNSLKNIDPLLLAPTCILLASKVEE 99          

HSP 2 Score: 69.707 bits (169), Expect = 1.209e-28
Identity = 34/84 (40.48%), Postives = 54/84 (64.29%), Query Frame = 2
Query:  359 YILNEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNEINMTPLSWEILNDT*KMDLILGHPPHLMALACIYI 610
            Y   +++ Y    ILE E  +LE L+  L+V+ PYR L+Q +QD G  +  +T LSW I+ND+ + D+ L +PP+ +A+AC+ I
Sbjct:  122 YAYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDMGQEDQLLT-LSWRIVNDSLRTDVCLLYPPYQIAIACLQI 204          
BLAST of EY676881 vs. ExPASy Swiss-Prot
Match: SSN8_YARLI (RNA polymerase II holoenzyme cyclin-like subunit OS=Yarrowia lipolytica GN=SSN8 PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 2.086e-20
Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 2
Query:  398 ILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMN--EINMTP----LSWEILNDT*KMDLILGHPPHLMALACIYI 610
            I E E  ++E L  YLV+FHPY+SL+Q       +  +I M P    ++W ++ND+   DL L +PPH++A+ACIY+
Sbjct:  134 IAECEFYLIEELGTYLVIFHPYKSLMQISDAMARSNAQITMAPEEIQVTWSMINDSYITDLHLLNPPHIVAMACIYM 210          

HSP 2 Score: 57.7658 bits (138), Expect = 2.086e-20
Identity = 36/125 (28.80%), Postives = 65/125 (52.00%), Query Frame = 1
Query:   19 MAANFWTSS---HY---KQLLDQEDVDVAQPLDREKGITVEDYKL--IKMQMSNYISKLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSE 369
            M+AN+WTSS   H+   K+ L +    +    D  K  T++      +++ +   I  L Q++ +RQR++ATA  Y+ R +T+    E +P+LV  T +Y+A K EE     R +    + ++ +
Sbjct:    1 MSANYWTSSQRLHWLLTKETLAERRKGLEDIFDPGKLQTIKALNPWHVRVYLHTLIHLLGQNLSIRQRILATAEVYLTRFHTKVPFGEINPYLVVATAVYVACKVEEHPQHIRTITSEARSLWPD 125          
BLAST of EY676881 vs. ExPASy Swiss-Prot
Match: SSN8_CHAGB (RNA polymerase II holoenzyme cyclin-like subunit OS=Chaetomium globosum GN=SSN8 PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 1.305e-19
Identity = 41/114 (35.96%), Postives = 67/114 (58.77%), Query Frame = 1
Query:   19 MAANFWTSSHYK--QLLDQEDVDVAQPLDREKGITVEDYKLIKMQMSNY-----ISKLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLL 339
            MAAN+W S+  K  Q   Q+   + Q LD E    V+ + L +++  N      I++L++ + +RQ+V+ATA  Y++R YTR ++ + +P+LV  T LYLA K EE     R++
Sbjct:    1 MAANYWESTQRKHWQFTKQDLAAIRQRLDDEDPGLVQMFPLPQLRHLNIYFNQQINRLSKRIGLRQQVMATAQVYLKRFYTRIAIRQTNPYLVLTTVLYLACKMEECPQHIRMM 114          

HSP 2 Score: 50.8322 bits (120), Expect = 1.305e-19
Identity = 24/69 (34.78%), Postives = 41/69 (59.42%), Query Frame = 2
Query:  404 EMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNEINMTPLSWEILNDT*KMDLILGHPPHLMALACIYI 610
            E E  ++  ++  L+V  PYRSL+    + G+ +  M+ L+W ++ND    DL L HPPH++AL  + +
Sbjct:  136 ECEFSLISEMHSNLIVHQPYRSLLGVQDEFGLTQDEMS-LAWTVINDHYMTDLPLLHPPHVVALTAVLL 203          
BLAST of EY676881 vs. ExPASy Swiss-Prot
Match: SSN8_COCIM (RNA polymerase II holoenzyme cyclin-like subunit OS=Coccidioides immitis GN=SSN8 PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 3.064e-18
Identity = 38/115 (33.04%), Postives = 66/115 (57.39%), Query Frame = 1
Query:   19 MAANFWTSS-HYKQLLDQEDVDVAQPL--DREKGITVE----DYKLIKMQMSNYISKLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLV 342
            MAA++W+S+ H   L  +E++  A+ +  D E+    +    D +L  + ++  + KLA+ + VRQ+ +ATA  Y++R YT+  +   +P+LV  T  YLA K EE     RL++
Sbjct:    1 MAADYWSSTQHQSWLFGREELAEARKVLGDAERPFIQQYPLPDLRLFNIYVNQQLIKLAKRLNVRQQALATAQVYVKRFYTKVEIRRTNPYLVLTTAFYLACKIEECPQHIRLVL 115          

HSP 2 Score: 50.0618 bits (118), Expect = 3.064e-18
Identity = 23/69 (33.33%), Postives = 40/69 (57.97%), Query Frame = 2
Query:  404 EMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNEINMTPLSWEILNDT*KMDLILGHPPHLMALACIYI 610
            E E  ++  +N  L+V HPYR+L +      +    +  L+W ++ND    DL+L HPPH++++  I+I
Sbjct:  150 ECEFWLISEMNSQLIVHHPYRTLSELQSYLSLTSDEIA-LAWSVINDHYLTDLLLLHPPHVISVMAIFI 217          
BLAST of EY676881 vs. ExPASy Swiss-Prot
Match: SSN8_ASPOR (RNA polymerase II holoenzyme cyclin-like subunit OS=Aspergillus oryzae GN=ssn8 PE=3 SV=2)

HSP 1 Score: 63.929 bits (154), Expect = 6.745e-18
Identity = 37/124 (29.84%), Postives = 64/124 (51.61%), Query Frame = 1
Query:   19 MAANFWTSSHYKQLLDQED--VDVAQPL-DREKG----ITVEDYKLIKMQMSNYISKLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSE 369
            MAAN+W S+  +  L  ++   D+ +   +R+K       + D +L+ +  S  + KL + +  RQ+ +ATA  Y++R YT+  +   +P+LV  T  YLA K EE     R +V   +  + E
Sbjct:    1 MAANYWASTQRRHWLFTKERLADIRESFRERDKAAHSQFPLPDQRLLNIYFSQQLIKLGKRMSTRQQALATAQVYIKRFYTKNEIRHTNPYLVVTTAFYLACKMEECPQHIRFVVAEARNFWPE 124          

HSP 2 Score: 48.521 bits (114), Expect = 6.745e-18
Identity = 23/75 (30.67%), Postives = 42/75 (56.00%), Query Frame = 2
Query:  386 EVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNEINMTPLSWEILNDT*KMDLILGHPPHLMALACIYI 610
            +V  + E E  ++  +N  L+V HPYR+L +   +  +    +  L+W ++ND    DL L +PPH++A+  I +
Sbjct:  129 DVSKLGECEFALISEMNSQLIVHHPYRTLSELQPELSLTSDEVA-LAWSVINDHYLTDLPLLYPPHVIAVMAIIV 202          
BLAST of EY676881 vs. ExPASy Swiss-Prot
Match: SSN8_NEUCR (RNA polymerase II holoenzyme cyclin-like subunit OS=Neurospora crassa GN=ssn-8 PE=3 SV=2)

HSP 1 Score: 60.077 bits (144), Expect = 1.477e-17
Identity = 39/114 (34.21%), Postives = 61/114 (53.51%), Query Frame = 1
Query:   19 MAANFWTSSHYKQLLDQEDVDVAQ--PLDREKGITVEDYKLIKMQMSNY-----ISKLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLL 339
            MAAN+W S+  K  L  +D   A    L+ E+   V  + L +++  N      I++L + + +RQ+ +ATA  Y++R YT+  +   +PH V  T LYLA K EE     RL+
Sbjct:    1 MAANYWESTQRKHWLFTKDELAAMRAKLEAEEPNLVASFPLPQLRHLNIYFNQQINRLGKRMGLRQQALATAQVYIKRFYTKVEIRRTNPHHVLVTALYLACKMEECPQHIRLM 114          

HSP 2 Score: 51.2174 bits (121), Expect = 1.477e-17
Identity = 26/75 (34.67%), Postives = 44/75 (58.67%), Query Frame = 2
Query:  386 EVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNEINMTPLSWEILNDT*KMDLILGHPPHLMALACIYI 610
            EV  I E E  ++  ++ +L+V  PYR+L     + G+ + ++  L+W ++ND    DL L HPPH++AL  I +
Sbjct:  131 EVARIGECEFYLISEMSSHLIVHSPYRTLTSLQGELGLAQEDVN-LAWSVINDHYMTDLPLLHPPHVIALTAILL 204          
The following BLAST results are available for this feature:
BLAST of EY676881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
CCNC_AEDAE1.044e-3047.00Cyclin-C OS=Aedes aegypti GN=CycC PE=3 SV=1[more]
CCNC_DICDI2.308e-3039.13Cyclin-C OS=Dictyostelium discoideum GN=cycC PE=3 ... [more]
CCNC_ANOGA8.632e-3044.00Cyclin-C OS=Anopheles gambiae GN=CycC PE=3 SV=2[more]
CCNC_DROPS3.230e-2942.00Cyclin-C OS=Drosophila pseudoobscura pseudoobscura... [more]
CCNC_DROME1.209e-2842.00Cyclin-C OS=Drosophila melanogaster GN=CycC PE=1 S... [more]
SSN8_YARLI2.086e-2041.56RNA polymerase II holoenzyme cyclin-like subunit O... [more]
SSN8_CHAGB1.305e-1935.96RNA polymerase II holoenzyme cyclin-like subunit O... [more]
SSN8_COCIM3.064e-1833.04RNA polymerase II holoenzyme cyclin-like subunit O... [more]
SSN8_ASPOR6.745e-1829.84RNA polymerase II holoenzyme cyclin-like subunit O... [more]
SSN8_NEUCR1.477e-1734.21RNA polymerase II holoenzyme cyclin-like subunit O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-028-B07-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676881 ID=EY676881; Name=EY676881; organism=Citrus sinensis; type=EST; length=1000bp
CAAAGGTGGGGTGAAAAAATGGCTGCCAATTTCTGGACATCGTCGCACTA
CAAACAGCTTCTGGACCAAGAAGACGTGGATGTGGCGCAACCTCTTGACA
GAGAAAAGGGCATCACTGTTGAAGATTACAAGCTCATTAAGATGCAGATG
TCCAACTATATATCGAAATTGGCCCAACATGTCAAAGTGAGGCAAAGGGT
TGTAGCCACTGCAGTTACATATATGAGACGCTGTTACACCAGAAAGAGTA
TGACAGAATATGATCCCCATCTTGTTGCTCCAACCTGCTTGTACTTGGCA
TCAAAAGCAGAAGAAAGCACAGTGCAGGCCCGACTTCTTGTTTTTTACAT
TAAAAAAATATATTCTGAATGAAAAGTATCGTTACGAAGTCAAGGATATA
CTTGAAATGGAAATGAAGATTTTAGAAGCTCTTAACTATTACTTAGTTGT
ATTCCATCCTTACCGTTCACTTGTGCAGTTTTTGCAGGACGCTGGCATGA
ATGAAATAAATATGACCCCTTTATCTTGGGAAATTCTGAACGACACATAA
AAGATGGACCTTATTCTTGGTCATCCTCCCCATTTGATGGCTTTGGCTTG
CATATATATTGGCCGGTGTAATTAGAGAAAAAAATAACCCCCCCTGGGTT
GGAAAACCTTCGGGGTTGATTTAAAGGGGGGGGAAAAACATTCTCAAGGG
GAAAAATTTAAAATTTTTTTAGAAAACCCAAAAACGGGGTTAAGGGGGGG
AAAAAAAAAAAACCCGCCCCTTTCGGGAAATTGGGGTTTTAAAAAAAATT
TAAAGAAAAAAGGGGAGACCCCGGCGGGGTTTTTGGCAAAAAACCCCCCC
CCCTGCGGGTGGTTTATACCACAAAAAAGGGGGAGAGAATGATGATATAA
AAATAAAAAAAAAATTATGGGGGGGGCGGGGGGGGTGGGGGGGGGGCCCG
ACAGCGGAAAAAAAAAATCCACACCTCACCACTCCTTTGTGTTTTTTGTT
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