EY676881

Overview
NameEY676881
Unique NameEY676881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1000
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY676881 vs. ExPASy Swiss-Prot
Match: SSN8_EMENI (RNA polymerase II holoenzyme cyclin-like subunit OS=Emericella nidulans GN=ssn8 PE=3 SV=2)

HSP 1 Score: 62.3882 bits (150), Expect = 3.258e-17
Identity = 37/124 (29.84%), Postives = 63/124 (50.81%), Query Frame = 1
Query:   19 MAANFWTSSHYKQ-LLDQEDVDVAQPLDREKG------ITVEDYKLIKMQMSNYISKLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSE 369
            MAAN+W S+  K  L  +E +   +   +EK         + D +L+ +  +  + KL + +  RQ+ +ATA  Y++R YT+  +   +P+LV  T  YLA K EE     R +V   + ++ E
Sbjct:    1 MAANYWASTQRKHWLFTRERLAEIRESFKEKDKASHTHFPLPDQRLLNIYFNQQLIKLGKRMSTRQQALATAQVYIKRYYTKNEIRNTNPYLVLTTAFYLACKMEECPQHIRFVVSEARALWPE 124          

HSP 2 Score: 47.7506 bits (112), Expect = 3.258e-17
Identity = 22/75 (29.33%), Postives = 41/75 (54.67%), Query Frame = 2
Query:  386 EVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNEINMTPLSWEILNDT*KMDLILGHPPHLMALACIYI 610
            +V  + E E  ++  +   L+V HPYR+L +   +  +    +  L+W ++ND    DL L +PPH++A+  I +
Sbjct:  129 DVSKVGECEFSLISEMQAQLIVHHPYRTLSELQPELSLTSDEVA-LAWSVINDHYLTDLSLLYPPHIIAVMAIIV 202          
BLAST of EY676881 vs. ExPASy Swiss-Prot
Match: SRB11_SCHPO (RNA polymerase II holoenzyme cyclin-like subunit OS=Schizosaccharomyces pombe GN=srb11 PE=1 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 4.274e-17
Identity = 33/108 (30.56%), Postives = 56/108 (51.85%), Query Frame = 1
Query:   19 MAANFWTSSHYKQLLDQEDVDVAQPLDREKGITVEDYKLIKMQMSNYISKLAQHVKVRQRVVATAVTYMRRCYTRKSMTE-YDPHLVAPTCLYLASKAEESTVQARLL 339
            MAAN+W SS   QL    D++  +P    K  T+  +K+++             +++RQRV+ATA+  +RR   +K+  + +    +  TC+YL+ K EE  V  R +
Sbjct:    1 MAANYWASSQLTQLFLSTDLESLEPTCLSKD-TIYQWKVVQ--------TFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTI 99          

HSP 2 Score: 54.6842 bits (130), Expect = 4.274e-17
Identity = 31/91 (34.07%), Postives = 47/91 (51.65%), Query Frame = 2
Query:  374 KYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNEINMTPLSWEILNDT*KMDLILGHPPHLMALACIYIGRCN*RKK*PPL 646
            K +    +I E+E +I+  L+ +L+V HPY SL Q   D  +N+  +   +W I+ND+    L L   PH +A A + I  CN     P L
Sbjct:  110 KVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQKQLE-FAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDENTIPKL 199          
BLAST of EY676881 vs. ExPASy Swiss-Prot
Match: SSN8_ASPTN (RNA polymerase II holoenzyme cyclin-like subunit OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=ssn8 PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 5.506e-17
Identity = 37/124 (29.84%), Postives = 62/124 (50.00%), Query Frame = 1
Query:   19 MAANFWTSSHYKQLLDQED--VDVAQPL-DREK----GITVEDYKLIKMQMSNYISKLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSE 369
            MAAN+W S+  +  L   +   D+ +   +R+K       + D +L+ +  S  + KL +    RQ+ +ATA  Y++R YT+  +   +P+LV  T  YLA K EE     R +V   +  + E
Sbjct:    1 MAANYWVSTQRRHWLFTRERLADIREGFKERDKVAHSQFPLPDQRLLNIYFSQQLIKLGKRTTTRQQALATAQVYIKRFYTKNDIRHTNPYLVITTAFYLACKMEECPQHIRFVVAEARSFWPE 124          

HSP 2 Score: 48.1358 bits (113), Expect = 5.506e-17
Identity = 23/75 (30.67%), Postives = 42/75 (56.00%), Query Frame = 2
Query:  386 EVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNEINMTPLSWEILNDT*KMDLILGHPPHLMALACIYI 610
            +V  + E E  ++  +N  L+V HPYR+L +   +  +    +  L+W ++ND    DL L +PPH++A+  I +
Sbjct:  129 DVSKLGECEFALISEMNSQLIVHHPYRTLSELTPELQLTSDEVA-LAWSVINDHYLTDLPLLYPPHVIAVMAIIV 202          
BLAST of EY676881 vs. ExPASy Swiss-Prot
Match: SSN8_ASPFU (RNA polymerase II holoenzyme cyclin-like subunit OS=Aspergillus fumigatus GN=ssn8 PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 7.158e-17
Identity = 37/124 (29.84%), Postives = 63/124 (50.81%), Query Frame = 1
Query:   19 MAANFWTSSHYKQ-LLDQEDVDVAQPLDRE------KGITVEDYKLIKMQMSNYISKLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSE 369
            MAAN+W S+  +  L  +E +   + + RE          + D +L+ +  S  + KL + +  RQ+ +ATA  Y++R YT+  +   +P+LV  T  YLA K EE     R +V   + ++ E
Sbjct:    1 MAANYWASTQRRHWLFTREKLAEIREIFREGDKVAHSQFPLPDQRLLNIYFSQQLIKLGKRMSTRQQALATAQVYIKRFYTKNEIRHTNPYLVLTTAFYLACKMEECPQHIRFVVGEARSLWPE 124          

HSP 2 Score: 45.8246 bits (107), Expect = 7.158e-17
Identity = 22/75 (29.33%), Postives = 41/75 (54.67%), Query Frame = 2
Query:  386 EVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNEINMTPLSWEILNDT*KMDLILGHPPHLMALACIYI 610
            +V  + E E  ++  +N  L+V HPYR+L +   +  +   +   L+W ++ND    DL L + PH++A+  I +
Sbjct:  129 DVSKLGECEFSLISEMNSQLIVHHPYRTLSELQPELSLTS-DEVALAWSVINDHYLTDLPLLYAPHVIAVMAIIV 202          
BLAST of EY676881 vs. ExPASy Swiss-Prot
Match: SSN8_PICST (RNA polymerase II holoenzyme cyclin-like subunit OS=Pichia stipitis GN=SSN8 PE=3 SV=2)

HSP 1 Score: 58.151 bits (139), Expect = 1.205e-16
Identity = 40/130 (30.77%), Postives = 69/130 (53.08%), Query Frame = 1
Query:   19 MAANFWTSSHYK--QLLDQEDVDVAQP---LDRE--KGITVEDYKLI------KMQMSNYISKLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSE 369
            M+A+FW SS     QL  Q  ++  +    L+R+  +   ++DY  I      ++ + N + KL + + +RQ  +ATA  Y+ R  TR S+ E + +L+  TCLY+A K EE     RL++   + ++ E
Sbjct:    1 MSADFWCSSQRNKWQLSRQSLLEARRKVLLLERKMIQNGLIKDYPNIHYDFNMRIYLHNLLIKLGRRLNIRQVALATAEIYLNRFLTRVSLKEINVYLLVTTCLYVACKIEECPQHIRLIISEARNLWPE 130          

HSP 2 Score: 50.0618 bits (118), Expect = 1.205e-16
Identity = 27/84 (32.14%), Postives = 45/84 (53.57%), Query Frame = 2
Query:  383 YEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNEI--------NMTPLSWEILNDT*KMDLILGHPPHLMALACIYI 610
            ++V  + E E  ++E ++ YL + HPY+SL+Q       N          +    +W ++ND+   DL L  PPH++A+A IYI
Sbjct:  134 HDVTKLAEFEFYLIEEMDSYLFLHHPYKSLIQIRDFLNENSAVFGFTLTDDELQNAWSLVNDSYITDLHLLLPPHIIAVASIYI 217          
BLAST of EY676881 vs. ExPASy Swiss-Prot
Match: SSN8_ASPCL (RNA polymerase II holoenzyme cyclin-like subunit OS=Aspergillus clavatus GN=ssn8 PE=3 SV=2)

HSP 1 Score: 62.3882 bits (150), Expect = 3.453e-16
Identity = 37/124 (29.84%), Postives = 63/124 (50.81%), Query Frame = 1
Query:   19 MAANFWTSSHYKQ-LLDQEDVDVAQPLDREKG------ITVEDYKLIKMQMSNYISKLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSE 369
            MAAN+W S+  +  L  +E +   +   RE+         + D +L+ +  S  + KL + +  RQ+ +ATA  Y++R YT+  +   +P+LV  T  YLA K EE     R +V   + ++ E
Sbjct:    1 MAANYWASTQRRHWLFTRERLAEIREAFRERHKLAHSQFPLPDQRLLNIYFSQQLIKLGKRMSTRQQALATAQVYIKRFYTKNEIRHTNPYLVLTTAFYLACKMEECPQHIRFVVGEARSLWPE 124          

HSP 2 Score: 44.2838 bits (103), Expect = 3.453e-16
Identity = 21/75 (28.00%), Postives = 40/75 (53.33%), Query Frame = 2
Query:  386 EVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNEINMTPLSWEILNDT*KMDLILGHPPHLMALACIYI 610
            +V  + E E  ++  +N  L+V HPYR+L     +  +   +   L+W ++ND    DL L + PH++A+  + +
Sbjct:  129 DVSKLGECEFSLISEMNSQLIVHHPYRTLSGLQSELSLTS-DEVALAWSVINDHYLTDLPLLYSPHVIAVMAVMV 202          
BLAST of EY676881 vs. ExPASy Swiss-Prot
Match: SSN8_DEBHA (RNA polymerase II holoenzyme cyclin-like subunit OS=Debaryomyces hansenii GN=SSN8 PE=3 SV=2)

HSP 1 Score: 53.1434 bits (126), Expect = 9.818e-16
Identity = 44/147 (29.93%), Postives = 66/147 (44.90%), Query Frame = 2
Query:  386 EVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMN--------EINMTPLSWEILNDT*KMDLILGHPPHLMALACIYIGRCN*RK-K*PPLGWKTFGVDLKGGEKHSQGEKFKIFLENPKTGLRGGKKKNP---PLSGNWGF 790
            +V  + E E  ++E ++ +LV+ HPYRSL+Q       N          +    SW ++ND+   DL L  PPH++A+A IYI     +      LG  +   D  G + H++     I  E+      GG   N    P SG  GF
Sbjct:  135 DVTKLAEFEFYLIEEMDSFLVLHHPYRSLLQIRDYLNENFALYGFSLSDDELQNSWSLINDSYITDLHLLLPPHIIAIATIYITIVLKKNISSLRLGANSMSNDTVGMDPHTKPNSNSIHAEDLMALATGGSAINDIGNPSSGTNGF 281          

HSP 2 Score: 51.9878 bits (123), Expect = 9.818e-16
Identity = 36/130 (27.69%), Postives = 62/130 (47.69%), Query Frame = 1
Query:   19 MAANFWTSSHYKQ-------LLDQEDVDVAQPLDREKGITVEDYKLI------KMQMSNYISKLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSE 369
            M+A+FW+SS   +       LL+     +       +   ++DY  +      ++ + N + KL + + VRQ  +ATA  YM R   + S+ E + +L+  TCLY A K EE     RL+    + ++ E
Sbjct:    1 MSADFWSSSQRNRWQLTRHSLLESRRKLLLLEKKMIQNGFIKDYPNVEYDANTRIYLHNLLIKLGRRLNVRQIALATAEIYMSRFLIKVSLKEINVYLLVTTCLYAACKIEECPQHIRLITSEARNLWPE 130          
BLAST of EY676881 vs. ExPASy Swiss-Prot
Match: SSN8_MAGGR (RNA polymerase II holoenzyme cyclin-like subunit OS=Magnaporthe grisea GN=SSN8 PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 2.152e-15
Identity = 43/122 (35.25%), Postives = 67/122 (54.92%), Query Frame = 1
Query:   19 MAANFWTSSHYKQLLDQEDVDVA--QPLDREKGITVEDYKLIKMQ-MSNYIS----KLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIY 363
            MAANFW S+  +  L  ++   A  Q L+ E    V  Y L + + + NY +    +LA+++ +RQ+ +ATA  YM+R YTR  +   +P LV  T +YLA K EE  +  R +    KK++
Sbjct:    1 MAANFWESTQRRNWLFTKEELAARRQQLENEDPSLVTMYPLPEWRHLYNYFNYQMLRLAKNLSIRQQAIATAQVYMKRFYTRVEIRSTNPTLVLVTAVYLACKMEEMPLHIRNVSLEAKKVW 122          

HSP 2 Score: 38.891 bits (89), Expect = 2.152e-15
Identity = 26/76 (34.21%), Postives = 42/76 (55.26%), Query Frame = 2
Query:  386 EVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGM-NEINMTPLSWEILNDT*KMDLILGHPPHLMALACIYI 610
            E+  I E E  ++  ++  L+V  PYR+L    QD  + N+ ++  +S+  LND    DL L + PH +ALA I +
Sbjct:  130 EIAKIGECEFWLISEMSAQLIVHQPYRTLTALQQDFQLANDDHVLAVSF--LNDHFMTDLPLLYAPHTIALAAIML 203          
BLAST of EY676881 vs. ExPASy Swiss-Prot
Match: SSN8_YEAST (RNA polymerase II holoenzyme cyclin-like subunit OS=Saccharomyces cerevisiae GN=SSN8 PE=1 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 2.806e-15
Identity = 29/77 (37.66%), Postives = 45/77 (58.44%), Query Frame = 2
Query:  398 ILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNEINMTPLS------WEILNDT*KMDLILGHPPHLMALACIYI 610
            + E E  +LE L  YL+V HPY+SL Q +Q        +T  S      W ++ND+   D+ L +PPH++A+AC++I
Sbjct:  160 VTEFEFYLLEELESYLIVHHPYQSLKQIVQVLKQPPFQITLSSDDLQNCWSLINDSYINDVHLLYPPHIIAVACLFI 236          

HSP 2 Score: 46.9802 bits (110), Expect = 2.806e-15
Identity = 27/83 (32.53%), Postives = 45/83 (54.22%), Query Frame = 1
Query:  121 EDYKLIKMQMSNYISKLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSE 369
            +DY L ++     I KL + + +RQ  +ATA  Y+ R   + S+ E + +++  TC+YLA K EE     R LV   + ++ E
Sbjct:   70 KDYNL-RIYCYFLIMKLGRRLNIRQYALATAHIYLSRFLIKASVREINLYMLVTTCVYLACKVEECPQYIRTLVSEARTLWPE 151          
BLAST of EY676881 vs. ExPASy Swiss-Prot
Match: SSN8_USTMA (RNA polymerase II holoenzyme cyclin-like subunit OS=Ustilago maydis GN=SSN8 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.957e-15
Identity = 38/118 (32.20%), Postives = 66/118 (55.93%), Query Frame = 1
Query:   19 MAANFWTSSHYKQ-LLDQEDVDVAQPLDREKGITVEDYKLIKMQMSNYISKLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSE 369
            M+AN+W S+     LLD+  +++A+  D      +E   L  +  SN +S + + + +RQRV A+A  + RR + + S +  DP LV  TC+Y+A+K EES +  +  V    + ++E
Sbjct:    1 MSANYWASTQCNNWLLDRPQLELARKEDLRYATRLECAAL-GVFFSNLLSLICKRLNLRQRVTASANVFFRRFFAKNSYSALDPFLVCATCVYVAAKVEESPIHIKSAVAEATRSFTE 117          

HSP 2 Score: 35.039 bits (79), Expect = 7.957e-15
Identity = 14/33 (42.42%), Postives = 22/33 (66.67%), Query Frame = 2
Query:  398 ILEMEMKILEALNYYLVVFHPYRSLVQFLQDAG 496
            + EME  +LE + + +V+FH YRSL+   +D G
Sbjct:  130 LAEMEFYLLEEMEFDMVLFHSYRSLIVMFEDYG 162          
The following BLAST results are available for this feature:
BLAST of EY676881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
SSN8_EMENI3.258e-1729.84RNA polymerase II holoenzyme cyclin-like subunit O... [more]
SRB11_SCHPO4.274e-1730.56RNA polymerase II holoenzyme cyclin-like subunit O... [more]
SSN8_ASPTN5.506e-1729.84RNA polymerase II holoenzyme cyclin-like subunit O... [more]
SSN8_ASPFU7.158e-1729.84RNA polymerase II holoenzyme cyclin-like subunit O... [more]
SSN8_PICST1.205e-1630.77RNA polymerase II holoenzyme cyclin-like subunit O... [more]
SSN8_ASPCL3.453e-1629.84RNA polymerase II holoenzyme cyclin-like subunit O... [more]
SSN8_DEBHA9.818e-1629.93RNA polymerase II holoenzyme cyclin-like subunit O... [more]
SSN8_MAGGR2.152e-1535.25RNA polymerase II holoenzyme cyclin-like subunit O... [more]
SSN8_YEAST2.806e-1537.66RNA polymerase II holoenzyme cyclin-like subunit O... [more]
SSN8_USTMA7.957e-1532.20RNA polymerase II holoenzyme cyclin-like subunit O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-028-B07-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676881 ID=EY676881; Name=EY676881; organism=Citrus sinensis; type=EST; length=1000bp
CAAAGGTGGGGTGAAAAAATGGCTGCCAATTTCTGGACATCGTCGCACTA
CAAACAGCTTCTGGACCAAGAAGACGTGGATGTGGCGCAACCTCTTGACA
GAGAAAAGGGCATCACTGTTGAAGATTACAAGCTCATTAAGATGCAGATG
TCCAACTATATATCGAAATTGGCCCAACATGTCAAAGTGAGGCAAAGGGT
TGTAGCCACTGCAGTTACATATATGAGACGCTGTTACACCAGAAAGAGTA
TGACAGAATATGATCCCCATCTTGTTGCTCCAACCTGCTTGTACTTGGCA
TCAAAAGCAGAAGAAAGCACAGTGCAGGCCCGACTTCTTGTTTTTTACAT
TAAAAAAATATATTCTGAATGAAAAGTATCGTTACGAAGTCAAGGATATA
CTTGAAATGGAAATGAAGATTTTAGAAGCTCTTAACTATTACTTAGTTGT
ATTCCATCCTTACCGTTCACTTGTGCAGTTTTTGCAGGACGCTGGCATGA
ATGAAATAAATATGACCCCTTTATCTTGGGAAATTCTGAACGACACATAA
AAGATGGACCTTATTCTTGGTCATCCTCCCCATTTGATGGCTTTGGCTTG
CATATATATTGGCCGGTGTAATTAGAGAAAAAAATAACCCCCCCTGGGTT
GGAAAACCTTCGGGGTTGATTTAAAGGGGGGGGAAAAACATTCTCAAGGG
GAAAAATTTAAAATTTTTTTAGAAAACCCAAAAACGGGGTTAAGGGGGGG
AAAAAAAAAAAACCCGCCCCTTTCGGGAAATTGGGGTTTTAAAAAAAATT
TAAAGAAAAAAGGGGAGACCCCGGCGGGGTTTTTGGCAAAAAACCCCCCC
CCCTGCGGGTGGTTTATACCACAAAAAAGGGGGAGAGAATGATGATATAA
AAATAAAAAAAAAATTATGGGGGGGGCGGGGGGGGTGGGGGGGGGGCCCG
ACAGCGGAAAAAAAAAATCCACACCTCACCACTCCTTTGTGTTTTTTGTT
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