EY676881

Overview
NameEY676881
Unique NameEY676881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1000
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY676881 vs. ExPASy Swiss-Prot
Match: SSN8_ASHGO (RNA polymerase II holoenzyme cyclin-like subunit OS=Ashbya gossypii GN=SSN8 PE=3 SV=2)

HSP 1 Score: 51.9878 bits (123), Expect = 1.039e-14
Identity = 25/80 (31.25%), Postives = 44/80 (55.00%), Query Frame = 2
Query:  398 ILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNEINMT------PLSWEILNDT*KMDLILGHPPHLMALACIYIGRC 619
            + E E  ++E L  Y++V +PYR++ Q          N+         SW ++ND+   D+ L +PPH++A+AC++I  C
Sbjct:  159 VTEFEFYLIEELQSYMIVHYPYRAMEQIAAALRRPPYNLVLSPDDLQNSWSLINDSYITDVHLLYPPHVIAMACLFITVC 238          

HSP 2 Score: 49.6766 bits (117), Expect = 1.039e-14
Identity = 32/100 (32.00%), Postives = 50/100 (50.00%), Query Frame = 1
Query:   85 AQPLDREKGITVEDYKL-----IKMQMSNYISKLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSE 369
            AQP+ +   IT  D        +++     I KL + + VRQ  +ATA  Y+ R   + S+ E + +L+  TC+YLA K EE     R LV   + ++ E
Sbjct:   51 AQPVTKNIPITHRDLHYDRDYNLRIYCYFLIMKLGRRLNVRQYALATAHVYLARFCLKASIREVNLYLLVTTCIYLACKVEECPQHIRTLVNEARSLWPE 150          
BLAST of EY676881 vs. ExPASy Swiss-Prot
Match: SSN8_CANGA (RNA polymerase II holoenzyme cyclin-like subunit OS=Candida glabrata GN=SSN8 PE=3 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 1.349e-14
Identity = 25/77 (32.47%), Postives = 44/77 (57.14%), Query Frame = 2
Query:  398 ILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNEINMTPLS------WEILNDT*KMDLILGHPPHLMALACIYI 610
            + E E  ++E L  YL+V HPY+S+ Q ++        +T  S      W ++ND+   D+ L + PH++A+AC++I
Sbjct:  178 VTEFEFYLIEELQCYLIVHHPYKSMEQIVEALKEEPFKLTFTSDELQNCWSLINDSFINDVHLTYAPHIIAMACLFI 254          

HSP 2 Score: 48.1358 bits (113), Expect = 1.349e-14
Identity = 28/83 (33.73%), Postives = 45/83 (54.22%), Query Frame = 1
Query:  121 EDYKLIKMQMSNYISKLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSE 369
            +DY L ++     I KL + + +RQ  +ATA  Y+ R   + S+ E + +L+  TC+YLA K EE     R LV   + ++ E
Sbjct:   88 KDYNL-RIYCYFLIMKLGRRLNIRQYALATAHIYLSRFLLKASVREVNLYLLVTTCVYLACKVEECPQYIRTLVSEARSLWPE 169          
BLAST of EY676881 vs. ExPASy Swiss-Prot
Match: CCNC_CAEBR (Cyclin-C OS=Caenorhabditis briggsae GN=cic-1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 2.286e-14
Identity = 39/110 (35.45%), Postives = 60/110 (54.55%), Query Frame = 1
Query:   19 MAANFWTSSHYKQLLDQEDVDVAQPLDREKGITVEDYKLIKMQMSNYISKLAQHV---------KVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEEST 321
            MA +FW SSH +Q +  +     Q  +  K  + E+Y  + +  +N+I+ +A            K+RQ+V+ATA+ Y +R Y R+S  +  P LVA T L+LA K EE T
Sbjct:    1 MALDFWKSSHAQQWIFDKTEIWKQRAEDMKTYSEEEYSRLNIFWANFITAVATECAHSQANVGCKLRQQVIATAIVYFKRFYLRQSFRDMCPFLVASTALFLACKVEEHT 110          

HSP 2 Score: 33.4982 bits (75), Expect = 2.286e-14
Identity = 23/83 (27.71%), Postives = 41/83 (49.40%), Query Frame = 2
Query:  398 ILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNEINMT--PLS---------WEILNDT*KMDLILGHPPHLMALACIYIG 613
            + + E  ++E L+  LVV H  R + + L+D   + +  T  P+           +++NDT + D+ L   PH + LA I +G
Sbjct:  143 LYDSEFILVEILDCCLVVHHATRPMFELLEDWKQHTLTSTNTPVKDFDQIEIQCQKVVNDTLRCDVGLMFAPHCIGLASISVG 225          
BLAST of EY676881 vs. ExPASy Swiss-Prot
Match: SSN8_GIBMO (RNA polymerase II holoenzyme cyclin-like subunit OS=Gibberella moniliformis GN=SSN8 PE=1 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 3.851e-14
Identity = 35/124 (28.23%), Postives = 67/124 (54.03%), Query Frame = 1
Query:   19 MAANFW--TSSHYKQLLDQEDVDVAQPLDREKGITVEDYKL-----IKMQMSNYISKLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSE 369
            M+AN+W  T   +     ++ V + Q L+ +    V  + L     + +  +  + +LA+ + +RQ+ +ATA  YM+R Y++  +   +P+LV  T +YLA K EES    RL+V   ++++ +
Sbjct:    1 MSANYWHSTQCRFWSFTKEQLVTMRQKLEEDNAELVRMFPLPQQRRLYIYFNQQLIRLAKRLTIRQQSMATAQVYMKRFYSKVEIRRTNPYLVIATAIYLACKIEESPQHIRLIVTEARQMWGD 124          

HSP 2 Score: 38.1206 bits (87), Expect = 3.851e-14
Identity = 19/69 (27.54%), Postives = 37/69 (53.62%), Query Frame = 2
Query:  404 EMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNEINMTPLSWEILNDT*KMDLILGHPPHLMALACIYI 610
            E E  ++  +   L+VF PYR++     +  + + +   L+  ++ND    DL L +PPH++A+  I +
Sbjct:  135 ECEFFMISEMRSQLIVFQPYRTITALRNELSLVD-DEVQLARSVINDHFMTDLPLLYPPHIIAMVAILL 202          
BLAST of EY676881 vs. ExPASy Swiss-Prot
Match: SSN8_KLULA (RNA polymerase II holoenzyme cyclin-like subunit OS=Kluyveromyces lactis GN=SSN8 PE=3 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 3.857e-14
Identity = 26/84 (30.95%), Postives = 44/84 (52.38%), Query Frame = 2
Query:  386 EVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNEINM------TPLSWEILNDT*KMDLILGHPPHLMALACIYIGRC 619
            +V  + E E  ++E L  YL+V HPYRSL Q  +     + N           W ++ND+   D+ L + PH++A++C++   C
Sbjct:  154 DVTKVTEFEFYLIEELQSYLIVHHPYRSLEQIEKALSSEKYNYKLSDDELQKIWSLINDSYTTDVHLLYSPHVIAISCLFAVSC 237          

HSP 2 Score: 47.3654 bits (111), Expect = 3.857e-14
Identity = 25/70 (35.71%), Postives = 38/70 (54.29%), Query Frame = 1
Query:  160 ISKLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSE 369
            I KL + + +RQ  + TA  Y+ R   R S+ E + +L+  TC+YLA K EE     R LV   + ++ E
Sbjct:   80 IMKLGRRLNIRQCALVTAHVYLSRFLLRASVREVNLYLLITTCIYLACKVEECPQHIRTLVNEARSLWPE 149          
BLAST of EY676881 vs. ExPASy Swiss-Prot
Match: CCNC_CAEEL (Cyclin-C OS=Caenorhabditis elegans GN=cic-1 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 1.099e-13
Identity = 40/110 (36.36%), Postives = 59/110 (53.64%), Query Frame = 1
Query:   19 MAANFWTSSHYKQLLDQEDVDVAQPLDREKGITVEDYKLIKMQMSNYISKLAQH---------VKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEEST 321
            MA NFW SSH +Q +  +     Q  +  K    E+Y  + +  +N+I+ +A            K+RQ+V+ATA+ Y +R Y R+S  +  P LVA T L+LA K EE T
Sbjct:    1 MALNFWKSSHCQQWIFDKTEIWKQRAEDMKIYNEEEYNRLNIFWANFITAVATEGAHSQANVGCKLRQQVIATAIIYFKRFYLRQSFRDMCPFLVASTALFLACKVEEHT 110          

HSP 2 Score: 30.8018 bits (68), Expect = 1.099e-13
Identity = 21/84 (25.00%), Postives = 40/84 (47.62%), Query Frame = 2
Query:  398 ILEMEMKILEALNYYLVVFHPYRSLVQFLQD----AGMNEINMTPLS---------WEILNDT*KMDLILGHPPHLMALACIYI 610
            + + E  ++E L+  LVV H  R + + L+D       + I   P+           ++ ND+ + D+ L  PPH++ L+ I +
Sbjct:  143 VYDSEFILVEILDCCLVVHHASRPMFELLEDLKQFTQQSTIANQPIKDLEAIEAQCQKVANDSLRCDVSLIFPPHVIGLSSIMV 226          
BLAST of EY676881 vs. ExPASy Swiss-Prot
Match: CCT15_ARATH (Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=2 SV=2)

HSP 1 Score: 46.9802 bits (110), Expect = 2.484e-12
Identity = 29/127 (22.83%), Postives = 61/127 (48.03%), Query Frame = 1
Query:    7 WGEKMAANFWTSSHYKQ------LLDQEDVDVAQPLDREKGITVEDYKLIKMQMSNYISKLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSE 369
            + E   ++   +SH KQ         +++++   P  R  GI ++    ++     ++  L   +KV Q  +ATA+ +  R + R+S  + D   +A  C++LA K EE+    + ++F   +I ++
Sbjct:   11 YSESGVSSHSRNSHEKQEEVSRWYFGRKEIEENSP-SRLDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFFRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIFVSYEIINK 136          

HSP 2 Score: 46.595 bits (109), Expect = 2.484e-12
Identity = 29/103 (28.16%), Postives = 50/103 (48.54%), Query Frame = 2
Query:  371 EKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNEINMTPLSWEILNDT*KMDLILGHPPHLMALACIYIGRCN*RKK*PPLG----WKTFGV 667
            E Y  + + IL  E  +L  L + L V+HPY+ LV+ ++   + +  +  ++W  +ND  +  L L   PH +A   I++     + K P  G    W+ F V
Sbjct:  149 EVYEQQKELILNGEKIVLSTLGFDLNVYHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDV 251          
BLAST of EY676881 vs. ExPASy Swiss-Prot
Match: CCT14_ORYSJ (Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=2 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 5.446e-12
Identity = 22/73 (30.14%), Postives = 38/73 (52.05%), Query Frame = 1
Query:  100 REKGITVEDYKLIKMQMSNYISKLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEES 318
            R  GI ++    ++     ++  L   +KV Q  +ATA+ +  R Y R+S  + D   +A  C++LA K EE+
Sbjct:   50 RRDGIDLKKESYLRKSYCTFLQDLGMRLKVPQVTIATAIVFCHRFYLRQSHAKNDRRTIATVCMFLAGKVEET 122          

HSP 2 Score: 43.8986 bits (102), Expect = 5.446e-12
Identity = 29/103 (28.16%), Postives = 49/103 (47.57%), Query Frame = 2
Query:  371 EKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNEINMTPLSWEILNDT*KMDLILGHPPHLMALACIYIGRCN*RKK*PPLG----WKTFGV 667
            E Y  + + IL  E  +L  L + L V HPY+ LV+ ++   + +  +  ++W  +ND  +  L L   PH +A   I++     + K P  G    W+ F V
Sbjct:  152 EVYDQQKELILLAERVVLATLGFDLNVHHPYKPLVEAIRKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDV 254          
BLAST of EY676881 vs. ExPASy Swiss-Prot
Match: CCT13_ORYSJ (Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYCT1-3 PE=3 SV=2)

HSP 1 Score: 48.521 bits (114), Expect = 5.461e-12
Identity = 22/75 (29.33%), Postives = 39/75 (52.00%), Query Frame = 1
Query:   94 LDREKGITVEDYKLIKMQMSNYISKLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEES 318
            L R  GI ++    ++     ++  L   +KV Q  +ATA+ +  R + R+S  + D   +A  C++LA K EE+
Sbjct:   49 LSRRDGIDLKKESYLRKSYCTFLQDLGMRLKVPQVTIATAIVFCHRFFLRQSHAKNDRRTIATVCMFLAGKVEET 123          

HSP 2 Score: 43.8986 bits (102), Expect = 5.461e-12
Identity = 36/141 (25.53%), Postives = 64/141 (45.39%), Query Frame = 2
Query:  371 EKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNEINMTPLSWEILNDT*KMDLILGHPPHLMALACIYIGRCN*RKK*PPLG----WKTFGVDLKGGEKHSQGEKFKIFLENPKTGLRGGKKKNPPLSGN 781
            E Y  + + IL  E  +L  L + L V HPY+ LV+ ++   + +  +  ++W  +ND  +  L L   PH +A   I++     + K P  G    W+ F V  +  E+ S  +  +++ +N        +   PP  GN
Sbjct:  153 EVYEQQKELILLGERVVLVTLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEEVS-NQMLELYEQN--------RVAPPPSQGN 284          
BLAST of EY676881 vs. ExPASy Swiss-Prot
Match: CCT14_ARATH (Cyclin-T1-4 OS=Arabidopsis thaliana GN=CYCT1-4 PE=1 SV=1)

HSP 1 Score: 46.595 bits (109), Expect = 1.547e-11
Identity = 30/111 (27.03%), Postives = 52/111 (46.85%), Query Frame = 2
Query:  347 TLKKYILNEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNEINMTPLSWEILNDT*KMDLILGHPPHLMALACIYIGRCN*RKK*PPLG----WKTFGV 667
            T +K    E Y  + + IL  E  +L  L +   V+HPY+ LV+ ++   + +  +  ++W  +ND  +  L L   PH +A   I++     + K P  G    W+ F V
Sbjct:  141 TAQKIKQKEVYEQQKELILNGEKIVLSTLGFDFNVYHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDV 251          

HSP 2 Score: 44.2838 bits (103), Expect = 1.547e-11
Identity = 26/110 (23.64%), Postives = 53/110 (48.18%), Query Frame = 1
Query:    7 WGEKMAANFWTSSHYKQ------LLDQEDVDVAQPLDREKGITVEDYKLIKMQMSNYISKLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEES 318
            +GE   +++  +S+ KQ         +++++   P  R   I ++    ++     ++  L   +KV Q  +ATA+ +  R + R+S    D   +A  C++LA K EE+
Sbjct:   11 FGESGVSSYSRNSNEKQDEVARWYFGRKEIEENSP-SRLDSIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHARNDRRTIATVCMFLAGKVEET 119          
The following BLAST results are available for this feature:
BLAST of EY676881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
SSN8_ASHGO1.039e-1431.25RNA polymerase II holoenzyme cyclin-like subunit O... [more]
SSN8_CANGA1.349e-1432.47RNA polymerase II holoenzyme cyclin-like subunit O... [more]
CCNC_CAEBR2.286e-1435.45Cyclin-C OS=Caenorhabditis briggsae GN=cic-1 PE=3 ... [more]
SSN8_GIBMO3.851e-1428.23RNA polymerase II holoenzyme cyclin-like subunit O... [more]
SSN8_KLULA3.857e-1430.95RNA polymerase II holoenzyme cyclin-like subunit O... [more]
CCNC_CAEEL1.099e-1336.36Cyclin-C OS=Caenorhabditis elegans GN=cic-1 PE=2 S... [more]
CCT15_ARATH2.484e-1222.83Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=... [more]
CCT14_ORYSJ5.446e-1230.14Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCT13_ORYSJ5.461e-1229.33Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCT14_ARATH1.547e-1127.03Cyclin-T1-4 OS=Arabidopsis thaliana GN=CYCT1-4 PE=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-028-B07-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676881 ID=EY676881; Name=EY676881; organism=Citrus sinensis; type=EST; length=1000bp
CAAAGGTGGGGTGAAAAAATGGCTGCCAATTTCTGGACATCGTCGCACTA
CAAACAGCTTCTGGACCAAGAAGACGTGGATGTGGCGCAACCTCTTGACA
GAGAAAAGGGCATCACTGTTGAAGATTACAAGCTCATTAAGATGCAGATG
TCCAACTATATATCGAAATTGGCCCAACATGTCAAAGTGAGGCAAAGGGT
TGTAGCCACTGCAGTTACATATATGAGACGCTGTTACACCAGAAAGAGTA
TGACAGAATATGATCCCCATCTTGTTGCTCCAACCTGCTTGTACTTGGCA
TCAAAAGCAGAAGAAAGCACAGTGCAGGCCCGACTTCTTGTTTTTTACAT
TAAAAAAATATATTCTGAATGAAAAGTATCGTTACGAAGTCAAGGATATA
CTTGAAATGGAAATGAAGATTTTAGAAGCTCTTAACTATTACTTAGTTGT
ATTCCATCCTTACCGTTCACTTGTGCAGTTTTTGCAGGACGCTGGCATGA
ATGAAATAAATATGACCCCTTTATCTTGGGAAATTCTGAACGACACATAA
AAGATGGACCTTATTCTTGGTCATCCTCCCCATTTGATGGCTTTGGCTTG
CATATATATTGGCCGGTGTAATTAGAGAAAAAAATAACCCCCCCTGGGTT
GGAAAACCTTCGGGGTTGATTTAAAGGGGGGGGAAAAACATTCTCAAGGG
GAAAAATTTAAAATTTTTTTAGAAAACCCAAAAACGGGGTTAAGGGGGGG
AAAAAAAAAAAACCCGCCCCTTTCGGGAAATTGGGGTTTTAAAAAAAATT
TAAAGAAAAAAGGGGAGACCCCGGCGGGGTTTTTGGCAAAAAACCCCCCC
CCCTGCGGGTGGTTTATACCACAAAAAAGGGGGAGAGAATGATGATATAA
AAATAAAAAAAAAATTATGGGGGGGGCGGGGGGGGTGGGGGGGGGGCCCG
ACAGCGGAAAAAAAAAATCCACACCTCACCACTCCTTTGTGTTTTTTGTT
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