EY758160

Overview
NameEY758160
Unique NameEY758160
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length896
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY758160 vs. ExPASy Swiss-Prot
Match: RPE_ECOL6 (Ribulose-phosphate 3-epimerase OS=Escherichia coli O6 GN=rpe PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.342e-34
Identity = 54/120 (45.00%), Postives = 77/120 (64.17%), Query Frame = 2
Query:  383 LQMIVEPEQR-VPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPXXCGHSFIESQVKKISXLRKMCLENGVNPXIEVXGGVGPKN 739
            + ++V+P  R VPDF  AGA I++ H E S   H+ RTL  IK+ G KAG+V NPAT LS ++ V+D +D++L+MSVNP   G SFI   + K+  +R+   E+G +  +EV GGV   N
Sbjct:   67 VHLMVKPVDRIVPDFAAAGASIITFHPEASE--HVDRTLQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFGGQSFIPQTLDKLREVRRRIDESGFDIRLEVDGGVKVNN 184          

HSP 2 Score: 65.855 bits (159), Expect = 8.342e-34
Identity = 29/53 (54.72%), Postives = 40/53 (75.47%), Query Frame = 3
Query:  105 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALR 263
            +++PSILSA+FA+LGE       AG D +H DVMD  +VPN+TIGP+V+ +LR
Sbjct:    5 LIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLR 57          
BLAST of EY758160 vs. ExPASy Swiss-Prot
Match: RPE_ECO57 (Ribulose-phosphate 3-epimerase OS=Escherichia coli O157:H7 GN=rpe PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.342e-34
Identity = 54/120 (45.00%), Postives = 77/120 (64.17%), Query Frame = 2
Query:  383 LQMIVEPEQR-VPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPXXCGHSFIESQVKKISXLRKMCLENGVNPXIEVXGGVGPKN 739
            + ++V+P  R VPDF  AGA I++ H E S   H+ RTL  IK+ G KAG+V NPAT LS ++ V+D +D++L+MSVNP   G SFI   + K+  +R+   E+G +  +EV GGV   N
Sbjct:   67 VHLMVKPVDRIVPDFAAAGASIITFHPEASE--HVDRTLQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFGGQSFIPQTLDKLREVRRRIDESGFDIRLEVDGGVKVNN 184          

HSP 2 Score: 65.855 bits (159), Expect = 8.342e-34
Identity = 29/53 (54.72%), Postives = 40/53 (75.47%), Query Frame = 3
Query:  105 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALR 263
            +++PSILSA+FA+LGE       AG D +H DVMD  +VPN+TIGP+V+ +LR
Sbjct:    5 LIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLR 57          
BLAST of EY758160 vs. ExPASy Swiss-Prot
Match: RPEC_RALEH (Ribulose-phosphate 3-epimerase, chromosomal OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbEC PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.067e-33
Identity = 53/124 (42.74%), Postives = 75/124 (60.48%), Query Frame = 2
Query:  383 LQMIVEP-EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPXXCGHSFIESQVKKISXLRKMC---LENGVNP-XIEVXGGVGPKN 739
            + ++VEP +  +P F KAGA+I+S H E S   H+ RT+  I+D G KAG+VLNPAT L  ++  LD +DLVL+MSVNP   G +FI   + K+   R      ++ G  P  +E+ GGV   N
Sbjct:   78 VHLMVEPVDALIPLFAKAGANIISFHPEASR--HVDRTIGLIRDHGCKAGLVLNPATPLGWLDHTLDQLDLVLLMSVNPGFGGQAFIPGVLDKVRQARARIDRQVDAGGRPVWLEIDGGVKADN 199          

HSP 2 Score: 75.8702 bits (185), Expect = 4.067e-33
Identity = 34/56 (60.71%), Postives = 46/56 (82.14%), Query Frame = 3
Query:  102 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV 269
            I ++PSILSA+FA+LGE+V A+E  G D +H DVMD  +VPN+TIGPLV +A+RP+
Sbjct:   16 IRLAPSILSADFARLGEEVCAIEAGGADLVHFDVMDNHYVPNLTIGPLVCEAIRPL 71          
BLAST of EY758160 vs. ExPASy Swiss-Prot
Match: RPEP_RALEH (Ribulose-phosphate 3-epimerase, plasmid OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbEP PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.170e-32
Identity = 52/124 (41.94%), Postives = 74/124 (59.68%), Query Frame = 2
Query:  383 LQMIVEP-EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPXXCGHSFIESQVKKISXLR----KMCLENGVNPXIEVXGGVGPKN 739
            + ++VEP +  +P F KAGA+++S H E S   H+ RT+  I+D G KAG+VLNPAT LS ++  LD +DLVL+MSVNP   G +FI   + K+   R    +     G    +E+ GGV   N
Sbjct:   78 VHLMVEPVDALIPMFAKAGANLISFHPEASR--HVDRTIGLIRDHGCKAGLVLNPATPLSWLDHTLDKLDLVLLMSVNPGFGGQAFIPGVLDKVRQARARIDRQVAAGGRPVWLEIDGGVKADN 199          

HSP 2 Score: 72.7886 bits (177), Expect = 1.170e-32
Identity = 33/56 (58.93%), Postives = 45/56 (80.36%), Query Frame = 3
Query:  102 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV 269
            I ++PSILSA+FA+LGE+V A+E  G D +H DVMD  +V N+TIGPLV +A+RP+
Sbjct:   16 IRLAPSILSADFARLGEEVCAIEAGGADLVHFDVMDNHYVSNLTIGPLVCEAIRPL 71          
BLAST of EY758160 vs. ExPASy Swiss-Prot
Match: RPE_BUCAI (Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=rpe PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.370e-32
Identity = 48/116 (41.38%), Postives = 75/116 (64.66%), Query Frame = 2
Query:  383 LQMIVEP-EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPXXCGHSFIESQVKKISXLRKMCLENGVNPXIEVXGGV 727
            + ++V+P +  +P F KAGA  ++ H E  +T+H+ RTLN IK+ G KAG+  NPAT L+ ++ +L+ +DL+L+MSVNP     SF+ S   K+  +RK+   N  +  +EV GGV
Sbjct:   67 VHLMVKPVDNLIPQFAKAGATFITFHPE--ATLHIERTLNLIKENGCKAGLAFNPATPLNFLDYILEKLDLILLMSVNPGFGNQSFLPSTFNKLREVRKIIDANFSDILLEVDGGV 180          

HSP 2 Score: 66.6254 bits (161), Expect = 3.370e-32
Identity = 29/52 (55.77%), Postives = 43/52 (82.69%), Query Frame = 3
Query:  108 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALR 263
            ++PSILSA+FA+LGE +K V  AG D IH DVMD  +VPN+++GP+++++LR
Sbjct:    6 LAPSILSADFARLGEDIKKVIDAGSDLIHFDVMDNHYVPNLSMGPMILESLR 57          
BLAST of EY758160 vs. ExPASy Swiss-Prot
Match: RPE_RHOCA (Ribulose-phosphate 3-epimerase OS=Rhodobacter capsulatus GN=cbbE PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.262e-31
Identity = 47/122 (38.52%), Postives = 70/122 (57.38%), Query Frame = 2
Query:  377 EVLQMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPXXCGHSFIESQVKKISXLRKMCLENGVNPXIEVXGGVGPKNA 742
            +V  MI   +  +  + +AGAD+++ H E     H+HRTL  I+  G K+GV +NP T   AIE VLD+ D+V +M+VNP   G  +I+    K+  LR M  +  V+  IE+ GG+ P  A
Sbjct:   68 DVHLMISPVDAYIDAYAQAGADVLTAHVEAGP--HIHRTLQAIRAAGMKSGVAINPGTPAEAIEHVLDIADVVCVMTVNPGFGGQKYID-MTAKVRKLRAMIGDRPVH--IEIDGGMDPVTA 184          

HSP 2 Score: 74.3294 bits (181), Expect = 1.262e-31
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 3
Query:   93 ESDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALR 263
            +  I ++PSILSA+FA  G +++A+E  G DW+HVDVMDG FVPN+T GP  V A R
Sbjct:    4 DRSIKIAPSILSADFADFGREIQAIEAQGADWVHVDVMDGHFVPNLTFGPPAVAAFR 60          
BLAST of EY758160 vs. ExPASy Swiss-Prot
Match: RPE_TREPA (Ribulose-phosphate 3-epimerase OS=Treponema pallidum GN=rpe PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.574e-28
Identity = 45/117 (38.46%), Postives = 69/117 (58.97%), Query Frame = 2
Query:  377 EVLQMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPXXCGHSFIESQVKKISXLRKMCLENGVNPXIEVXGGV 727
            +V  M+  P   + DF++AGAD ++ H E  + +H HR ++ I+  G K G+ L P+T ++A+  VL  VDLVL+M+VNP   G   I   + K+S L +M  E G +  I V GG+
Sbjct:   66 DVHLMVSRPADLIEDFVQAGADFLTFHIE--AEVHAHRLIHAIRGRGVKVGISLVPSTPVAALSEVLPFVDLVLVMTVNPGFSGQQMIAHCLSKVSALVQMRTERGYSYMISVDGGI 180          

HSP 2 Score: 59.6918 bits (143), Expect = 1.574e-28
Identity = 27/61 (44.26%), Postives = 39/61 (63.93%), Query Frame = 3
Query:   90 LESDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT 272
            +E    ++PS+LSA+F+ L   +  +E  G  W+H+DVMDG FVPN+T G  V+  LR  T
Sbjct:    1 MERSFTLAPSLLSADFSALDRALVYLEAHGAQWVHLDVMDGHFVPNLTFGAPVLRCLRSKT 61          
BLAST of EY758160 vs. ExPASy Swiss-Prot
Match: RPE_CHLMU (Ribulose-phosphate 3-epimerase OS=Chlamydia muridarum GN=rpe PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.361e-26
Identity = 45/124 (36.29%), Postives = 69/124 (55.65%), Query Frame = 2
Query:  377 EVLQMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPXXCGHSFIESQVKKISXLRK--MCLENGVNPXIEVXGGVGPKNA 742
            EV  MI  P + V  F+KAGAD + VH E +   +L   L+ I+  G +AG+  +P TS+  I   + + D++L+MSV P  CG  FI   ++KI  +R+    L    +  IEV GG+  ++A
Sbjct:   67 EVHAMIYTPFEFVEAFVKAGADRIIVHFEAAE--NLKEILDYIRKCGVQAGIAFSPETSIEFISAFIPLCDVILLMSVQPGFCGQKFIPDTIEKIRFVRQAIQTLGKEGSCLIEVDGGIDEESA 188          

HSP 2 Score: 61.6178 bits (148), Expect = 2.361e-26
Identity = 26/57 (45.61%), Postives = 41/57 (71.93%), Query Frame = 3
Query:  102 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT 272
            ++++PSI+ A+ A LG+  + +E +G + IH+DVMDG FVPNIT GP ++ A+   T
Sbjct:    6 VLIAPSIMGADLACLGDAARNIEESGANLIHIDVMDGHFVPNITFGPGIIAAINRST 62          
BLAST of EY758160 vs. ExPASy Swiss-Prot
Match: RPE_CHLTR (Ribulose-phosphate 3-epimerase OS=Chlamydia trachomatis GN=rpe PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 5.206e-26
Identity = 42/124 (33.87%), Postives = 69/124 (55.65%), Query Frame = 2
Query:  377 EVLQMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPXXCGHSFIESQVKKISXLRK--MCLENGVNPXIEVXGGVGPKNA 742
            EV  MI  P + V  F+KAGAD + VH E +  I     ++ I+  G +AGV  +P TS+  +   + + D++L+MSV+P  CG  FI   +++I  +++    L    +  IEV GG+  ++A
Sbjct:   72 EVHAMIYTPFEFVEAFVKAGADRIIVHFEAAENIK--EIISYIQKCGVQAGVAFSPETSIEFVTSFIPLCDVILLMSVHPGFCGQKFIPDTIERIQFVKQAIQVLGREGSCLIEVDGGIDKESA 193          

HSP 2 Score: 64.3142 bits (155), Expect = 5.206e-26
Identity = 29/57 (50.88%), Postives = 41/57 (71.93%), Query Frame = 3
Query:  102 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT 272
            ++V+PSI+ A+ A +G + + +E +G D IH+DVMDG FVPNIT GP VV A+   T
Sbjct:   11 VLVAPSIMGADLACIGREARNIEESGADLIHIDVMDGHFVPNITFGPGVVAAINRST 67          
BLAST of EY758160 vs. ExPASy Swiss-Prot
Match: RPE_STRCO (Ribulose-phosphate 3-epimerase OS=Streptomyces coelicolor GN=rpe PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.208e-26
Identity = 37/113 (32.74%), Postives = 66/113 (58.41%), Query Frame = 2
Query:  389 MIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPXXCGHSFIESQVKKISXLRKMCLENGVNPXIEVXGGV 727
            MI  P++  P +++AGA  V+ H E ++     R   +I+  GA+A + L PAT +   E +L  +D++LIM+V P   G +F++  + KI   R++  ++G+   ++V GGV
Sbjct:   66 MIEAPDRWAPQYVEAGAGSVTFHAEAAAAPV--RLAREIRAKGARASMALKPATPVEPYEDLLPELDMLLIMTVEPGFGGQAFLDIMLPKIRRTRELIKKHGLELWLQVDGGV 176          

HSP 2 Score: 68.1662 bits (165), Expect = 5.208e-26
Identity = 32/55 (58.18%), Postives = 43/55 (78.18%), Query Frame = 3
Query:  108 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT 272
            ++PSILSA+FA+L ++ KAVE  G DW+HVDVMD  FVPN+T+G  VV++L   T
Sbjct:    5 INPSILSADFARLADEAKAVE--GADWLHVDVMDNHFVPNLTLGVPVVESLARAT 57          
The following BLAST results are available for this feature:
BLAST of EY758160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RPE_ECOL68.342e-3445.00Ribulose-phosphate 3-epimerase OS=Escherichia coli... [more]
RPE_ECO578.342e-3445.00Ribulose-phosphate 3-epimerase OS=Escherichia coli... [more]
RPEC_RALEH4.067e-3342.74Ribulose-phosphate 3-epimerase, chromosomal OS=Ral... [more]
RPEP_RALEH1.170e-3241.94Ribulose-phosphate 3-epimerase, plasmid OS=Ralston... [more]
RPE_BUCAI3.370e-3241.38Ribulose-phosphate 3-epimerase OS=Buchnera aphidic... [more]
RPE_RHOCA1.262e-3138.52Ribulose-phosphate 3-epimerase OS=Rhodobacter caps... [more]
RPE_TREPA1.574e-2838.46Ribulose-phosphate 3-epimerase OS=Treponema pallid... [more]
RPE_CHLMU2.361e-2636.29Ribulose-phosphate 3-epimerase OS=Chlamydia murida... [more]
RPE_CHLTR5.206e-2633.87Ribulose-phosphate 3-epimerase OS=Chlamydia tracho... [more]
RPE_STRCO5.208e-2632.74Ribulose-phosphate 3-epimerase OS=Streptomyces coe... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-040-H03-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY758160 ID=EY758160; Name=EY758160; organism=Citrus sinensis; type=EST; length=896bp
AAACCAATACTTAATCAGCCCACCTCACTTAGTTGTACACGGGGGATAAT
CCATACTATACTGCACGCATCATCCCGCGTGGATAATGCCTCGAAAGTGA
TATTATTGTTTCTCCATCTATTCTCTCTGCTAATTTCGCGAAGTTAGGCG
AGCAGGTAAAAGCAGTGGAATTGGCTGGTTGTGATTGGATTCATGTTGAT
GTCATGGATGGTCGTTTTGTTCCAAACATTACAATTGGACCTCTTGTGGT
TGATGCCTTGCGCCCTGTGACAGACCTTCCTTTGGATGTTCATTTGGTGT
TGTTTCTTTTGCATAGCTTTCTCATTGATCAAGTCATTTTCAAATAAAAG
ATATGCTTGCTTGCTGACATGAAGCTGAAGTGTTGCAGATGATTGTCGAA
CCTGAACAACGAGTGCCTGATTTTATCAAGGCTGGAGCAGACATAGTCAG
CGTCCACTGTGAGCAATCATCCACCATTCATTTGCACCGCACTCTTAACC
AAATAAAAGATTTGGGAGCTAAAGCTGGAGTTGTCCTTAACCCTGCTACC
TCACTGAGTGCAATAGAATGTGTCCTTGATGTGGTTGATCTTGTCTTGAT
CATGTCNGTGAACCCTGNCTNNTGTGGGCATAGCTTTATTGAGAGCCAAG
TNAAAAAAATCTCANACTTGAGAAAGATGTGTTTAGAGAATGGAGTNAAC
CCATGNATTGAAGTANATGGTGGAGTAGGTCCCAAAAATGCATATAGGNN
TATTGAGCTGGCGCCTATGCCCTNGTTGCTGGTTCANCTGCCTTTGGAGC
TAAAGATATGCTGAAGCTCTAAGGGGATTNATACCANCAAAAGCACAAGG
CAGTGCAGTGTGACAGATGATACAAAAAGGGATGTTAGATTCATCC
back to top