EY758138

Overview
NameEY758138
Unique NameEY758138
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY758138 vs. ExPASy Swiss-Prot
Match: RS19E_ARCFU (30S ribosomal protein S19e OS=Archaeoglobus fulgidus GN=rps19e PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.092e-16
Identity = 43/102 (42.16%), Postives = 58/102 (56.86%), Query Frame = 1
Query:   22 VKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGIRPPHFSKSSGSVARHILHHL 327
            V DV     +K  A  LK    +  P W   VKTG  KE +P   DW+Y+R AS+ R++Y+ G +G+   R  YGG KR G +PP F K SG++ R+ LH L
Sbjct:    4 VYDVPADLLIKRVAERLK--DMVAPPEWAKYVKTGVHKERSPEQDDWWYLRLASIFRRVYIDGPVGIERLRTFYGGRKRRGSKPPKFRKGSGAIVRNALHQL 103          
BLAST of EY758138 vs. ExPASy Swiss-Prot
Match: RS19E_METJA (30S ribosomal protein S19e OS=Methanocaldococcus jannaschii GN=rps19e PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.661e-16
Identity = 45/102 (44.12%), Postives = 56/102 (54.90%), Query Frame = 1
Query:   22 VKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGIRPPHFSKSSGSVARHILHHL 327
            V DV   + ++  A  LK    I +P W D VKTG  +E  P   DW+YIR AS+ RKIY+ G +GV   R  YGG K  G  P HF K SG++ R  L  L
Sbjct:    4 VYDVPADKLIQKTAEKLKEMN-IGVPEWVDFVKTGVSRERRPDQDDWWYIRCASILRKIYIYGPVGVSRLRTAYGGRKNRGHEPEHFYKGSGNIIRKALQEL 104          
BLAST of EY758138 vs. ExPASy Swiss-Prot
Match: RS19E_AERPE (30S ribosomal protein S19e OS=Aeropyrum pernix GN=rps19e PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.791e-15
Identity = 44/112 (39.29%), Postives = 62/112 (55.36%), Query Frame = 1
Query:   19 NVKDVSPHEFVKAYAAHLKRS-GKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGG-LGVGSFRRIYGGGKRNGIRPPHFSKSSGSVARHILHHLGDTNIMV 348
            N  +V     ++  A  LK    +++ P W    KTG  KE  P D DW+Y+RAAS+ RK+Y     +G+ +FR IYGG +  G  P HF K+ GSV R IL  L +  ++V
Sbjct:    3 NALEVPADLLIRRVARKLKEKYPQVKPPAWAYFAKTGPHKERPPTDRDWWYVRAASILRKLYKSPEPIGIETFRTIYGGRQNRGSAPEHFRKAGGSVPRKILQQLEEAGLVV 114          
BLAST of EY758138 vs. ExPASy Swiss-Prot
Match: RS19E_THEVO (30S ribosomal protein S19e OS=Thermoplasma volcanium GN=rps19e PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.340e-14
Identity = 42/115 (36.52%), Postives = 56/115 (48.70%), Query Frame = 1
Query:   19 NVKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGIRPPHFSKSSGSVARHILHHLGDTNIMVLDCKG 363
            +VK V     +   +  LK   KI+ P W   VKTG  KE  P   DW Y+RAASM RK+Y+ G LG+      YGG    G +  H +  S S+ R + H L    ++    KG
Sbjct:    3 SVKYVPSDMLINYVSGKLKEEKKIKEPNWVKFVKTGVSKEKPPLQDDWIYVRAASMLRKLYINGYLGISRMSSEYGGKVDRGSKRYHAASGSRSITRFLFHELESAGLVQKTQKG 117          
BLAST of EY758138 vs. ExPASy Swiss-Prot
Match: RS19E_PYRHO (30S ribosomal protein S19e OS=Pyrococcus horikoshii GN=rps19e PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.698e-14
Identity = 41/102 (40.20%), Postives = 53/102 (51.96%), Query Frame = 1
Query:   22 VKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGIRPPHFSKSSGSVARHILHHL 327
            V DV     V+  A  LK   +I+ P W   VKTG  KE  P   DW+Y R AS+ R++Y+ G +G+   R  YGG K  G  P  F K+ GS+ R  L  L
Sbjct:    4 VYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRVYIDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQL 105          
BLAST of EY758138 vs. ExPASy Swiss-Prot
Match: RS19E_THEAC (30S ribosomal protein S19e OS=Thermoplasma acidophilum GN=rps19e PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.693e-13
Identity = 38/103 (36.89%), Postives = 56/103 (54.37%), Query Frame = 1
Query:   19 NVKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGIRPPHFSKSSGSVARHILHHL 327
            +VK V     +   +  LK   KI  P W+  VKTG  +E +P + DW Y+RAA+M RK+Y+ G LG+      YGG    G +  H ++ S S+ R++ H L
Sbjct:    3 SVKYVPSDLLINYVSEKLKSEKKIAEPDWSKYVKTGISREKSPVNRDWIYVRAAAMLRKLYINGYLGISRMSSEYGGKVDRGSKRYHAAQGSRSIIRYLFHEL 105          
BLAST of EY758138 vs. ExPASy Swiss-Prot
Match: RS19E_HALMA (30S ribosomal protein S19e OS=Haloarcula marismortui GN=rps19e PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 1.403e-12
Identity = 44/124 (35.48%), Postives = 61/124 (49.19%), Query Frame = 1
Query:   28 DVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYG----GGKRNGIRPPHFSKSSGSVARHILHHLGDTNIMVLDCKGGMRITFRG 387
            DV P E ++A    L     IE P W +  KTG  +EL P   D++  RAAS+ RK+ + G +GV + R  YG    G  R  +RP   +K SG++ R  L  L D   +      G R+T  G
Sbjct:    6 DVPPEELIEALTETLADEDDIEAPDWAEFTKTGVDRELPPEQEDFWTRRAASLLRKVAVDGPVGVNALRSEYGTSKQGTTRYRVRPHQKTKGSGNIIRTALQQLEDAGYVETSENDGRRVTGDG 129          
The following BLAST results are available for this feature:
BLAST of EY758138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RS19E_ARCFU2.092e-1642.1630S ribosomal protein S19e OS=Archaeoglobus fulgid... [more]
RS19E_METJA4.661e-1644.1230S ribosomal protein S19e OS=Methanocaldococcus j... [more]
RS19E_AERPE8.791e-1539.2930S ribosomal protein S19e OS=Aeropyrum pernix GN=... [more]
RS19E_THEVO3.340e-1436.5230S ribosomal protein S19e OS=Thermoplasma volcani... [more]
RS19E_PYRHO5.698e-1440.2030S ribosomal protein S19e OS=Pyrococcus horikoshi... [more]
RS19E_THEAC3.693e-1336.8930S ribosomal protein S19e OS=Thermoplasma acidoph... [more]
RS19E_HALMA1.403e-1235.4830S ribosomal protein S19e OS=Haloarcula marismort... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-040-F02-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY758138 ID=EY758138; Name=EY758138; organism=Citrus sinensis; type=EST; length=917bp
GAGATGGATACTGCAAAAAACGTGAAGGACGTGTCTCCCCACGAGTTCGT
CAAGGCCTACGCCGCCCATCTCAAGCGCTCCGGCAAGATTGAGCTTCCTA
CTTGGAACGACATCGTCAAGACTGGAACGTTGAAGGAGCTAGCCCCTTAT
GACCCCGATTGGTACTATATCAGGGCTGCTTCAATGGCGAGGAAGATCTA
CTTGAGGGGTGGTCTTGGTGTTGGTTCCTTCCGTAGAATCTATGGAGGGG
GGAAGAGGAACGGTATCCGCCCACCTCATTTCAGCAAGAGCAGCGGCTCT
GTTGCTCGTCACATACTTCACCATTTGGGGGACACGAACATCATGGTGCT
TGACTGCAAGGGTGGAATGAGAATCACATTCCGCGGGCCGCGGGATCCTT
GATCAATTTGCTGGGCGGATTGCCTCTGTTGCCCCTTGGGGGGTTATCTC
AATCCTTCAAAGGCGGGCTGGTTTTTAGTTGGGTGGCTGGATGGGGGTTT
GTTGTATAGACCCTGCGGCTGCGGCTCTAACTGTGTGTCTCGAACCTCGG
TGTATTGGTTTCCGTCATCTTTACTATCACTTACACTAATAATAATTAAA
GGTATGCGGTGTTGAGAGTCGTTCTTTGGATATCTTTGTTGGTTATTTTA
CCTTCTTTTTTTGTTCCCATAACTTTTAATTGGTCTTTCGTTATAAGCTG
GGAATGGTTAAAACACTCTCTTTCTCCCTGCGGGCGAGTAGGCGGGTCTG
TTTCGCGATGGGGGGTGCGTGTCTTTTCTCTCTCCTTTTTCTTTACACAA
TCTTTTCGTTGTTGCGCACTGGATCCTTTATTTCAGACGTGTTTGCTGCG
GGGAGGTAGATAAGCACATGAGTCTTTGTATTGTTATGGGTGTGAGATCG
ACGGTAATGTATAATAA
back to top