CX300823

Overview
NameCX300823
Unique NameCX300823
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length427
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300823 vs. ExPASy Swiss-Prot
Match: PDR2_ORYSJ (Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.294e-26
Identity = 53/115 (46.09%), Postives = 78/115 (67.83%), Query Frame = 3
Query:    3 NVAAIIAAPCYMLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSVPVKHLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 347
            +VA+I+++  Y +WNLFSGF+I   ++PI+WRWY W  P+AW+LYGL  SQFG  D +  + DGT   PVK  +++ F F+H +L +   ++VAF  +FA +F +AI    FQKR
Sbjct: 1355 HVASIVSSAFYGIWNLFSGFIIPRPKVPIWWRWYCWICPVAWTLYGLVASQFG--DIMTPMDDGT---PVKIFVENYFDFKHSWLGVVAVVIVAFTMLFAFLFGFAIMKLNFQKR 1464          
BLAST of CX300823 vs. ExPASy Swiss-Prot
Match: AB40G_ARATH (ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.420e-26
Identity = 50/115 (43.48%), Postives = 76/115 (66.09%), Query Frame = 3
Query:    3 NVAAIIAAPCYMLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSVPVKHLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 347
            ++A+++++  Y +WNLFSGF+I    +P++W WYYW  P+AW+LYGL  SQFGD    +       ++ VK  +++ +G+R  FL +  AM V F  +FA+IFA  IK+F FQKR
Sbjct: 1313 HIASVVSSAFYGIWNLFSGFLIPRPSMPVWWEWYYWLCPVAWTLYGLIASQFGD----ITEPMADSNMSVKQFIREFYGYREGFLGVVAAMNVIFPLLFAVIFAIGIKSFNFQKR 1423          
BLAST of CX300823 vs. ExPASy Swiss-Prot
Match: PDR4_ORYSJ (Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.385e-26
Identity = 52/115 (45.22%), Postives = 75/115 (65.22%), Query Frame = 3
Query:    3 NVAAIIAAPCYMLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSVPVKHLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 347
            ++AAII++  Y +WNLFSG++I   +IP++WRWY W  P+AW+LYGL  SQFGD   +++    T    V   + D FGF H+FL +   + V FA  FA +F++AI  F FQ+R
Sbjct: 1340 SIAAIISSAFYNVWNLFSGYLIPRPKIPVWWRWYCWICPVAWTLYGLVASQFGDIQHVLEGDTRT----VAQFVTDYFGFHHNFLWVVAVVHVVFAVTFAFLFSFAIMKFNFQRR 1450          
BLAST of CX300823 vs. ExPASy Swiss-Prot
Match: PDR2_NICPL (Pleiotropic drug resistance protein 2 OS=Nicotiana plumbaginifolia GN=PDR2 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.868e-25
Identity = 49/114 (42.98%), Postives = 72/114 (63.16%), Query Frame = 3
Query:    6 VAAIIAAPCYMLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSVPVKHLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 347
            +AAI+ +     WNLFSGF+I    IP++WRWYYWA+P+AW++YG+  SQ GD    ++L+  T  + V   LK+  G+ HDFL++     V +  +F  +FAY IK   +QKR
Sbjct: 1348 IAAIVMSFFLSFWNLFSGFLIPRPLIPVWWRWYYWASPVAWTIYGIFASQVGDRTDELELTGETEKIQVNEFLKEYLGYDHDFLLVVVFAHVGWVLLFFFVFAYGIKFLNYQKR 1461          
BLAST of CX300823 vs. ExPASy Swiss-Prot
Match: AB35G_ARATH (ABC transporter G family member 35 OS=Arabidopsis thaliana GN=ABCG35 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.186e-25
Identity = 51/114 (44.74%), Postives = 71/114 (62.28%), Query Frame = 3
Query:    6 VAAIIAAPCYMLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSVPVKHLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 347
            VA+I A+  Y ++NLFSGF I   +IP +W WYYW  P+AW++YGL TSQ+GD +  + L  G   + VK  +KD +GF  D++     ++V F   FA IFA+ IK   FQ R
Sbjct: 1329 VASIFASAFYGIFNLFSGFFIPRPKIPKWWVWYYWICPVAWTIYGLITSQYGDVETPIALLGGAPGLTVKQYIKDQYGFESDYMGPVAGVLVGFTVFFAFIFAFCIKTLNFQSR 1442          
BLAST of CX300823 vs. ExPASy Swiss-Prot
Match: AB36G_ARATH (ABC transporter G family member 36 OS=Arabidopsis thaliana GN=ABCG36 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.271e-25
Identity = 49/114 (42.98%), Postives = 74/114 (64.91%), Query Frame = 3
Query:    6 VAAIIAAPCYMLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSVPVKHLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 347
            VA+I A+  Y ++NLFSGF I   +IP +W WYYW  P+AW++YGL  SQ+GD +  +++  G   + VK  ++D +GF+ DF+    A+++AF   FA IFA+ I+   FQ R
Sbjct: 1356 VASIFASAFYGIFNLFSGFFIPRPKIPKWWIWYYWICPVAWTVYGLIVSQYGDVETRIQVLGGAPDLTVKQYIEDHYGFQSDFMGPVAAVLIAFTVFFAFIFAFCIRTLNFQTR 1469          
BLAST of CX300823 vs. ExPASy Swiss-Prot
Match: PDR1_ORYSJ (Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.601e-24
Identity = 48/115 (41.74%), Postives = 75/115 (65.22%), Query Frame = 3
Query:    3 NVAAIIAAPCYMLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSVPVKHLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 347
            +VA+I+++  Y +WNLF+GF+I+    P++WRWY W  P+AW+LYGL  SQ+G  D +  + DG   +PV   +++ F F+H +L     ++VAF  +FA +F +AI    FQKR
Sbjct: 1359 HVASIVSSAFYAIWNLFTGFVISRPATPVWWRWYCWICPVAWTLYGLIVSQYG--DIVTPMDDG---IPVNVFVENYFDFKHSWLGFVAVVIVAFTMLFAFLFGFAIMKLNFQKR 1468          
BLAST of CX300823 vs. ExPASy Swiss-Prot
Match: PDR5_ORYSJ (Pleiotropic drug resistance protein 5 OS=Oryza sativa subsp. japonica GN=PDR5 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 1.748e-23
Identity = 46/114 (40.35%), Postives = 70/114 (61.40%), Query Frame = 3
Query:    6 VAAIIAAPCYMLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSVPVKHLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 347
            +AA++ +     WN F+GF+I    IP++WRW+YWANP++W++YG+  SQF D D++V +   + ++ VK  L+   GF+HDFL         +  IF  +F Y IK   FQKR
Sbjct: 1341 LAAVLVSFVLSSWNNFAGFIIPRPLIPVWWRWFYWANPVSWTIYGVIASQFADSDRVVTVPGQSTTMVVKDFLEKNMGFKHDFLGYVVLAHFGYVIIFFFLFGYGIKCLNFQKR 1454          
BLAST of CX300823 vs. ExPASy Swiss-Prot
Match: PDR15_ORYSJ (Pleiotropic drug resistance protein 15 OS=Oryza sativa subsp. japonica GN=PDR15 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.748e-23
Identity = 48/114 (42.11%), Postives = 71/114 (62.28%), Query Frame = 3
Query:    6 VAAIIAAPCYMLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSVPVKHLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 347
            VA+I+ A  Y L+NLFSGF I   +IP +W WYYW  P+AW++YGL  SQ+GD +  + +  G     V+  +KD FG+  DF+ +  A++  F   FA  +AY+I+   FQ+R
Sbjct: 1397 VASILGAAFYTLFNLFSGFFIPRPKIPKWWVWYYWLCPVAWTVYGLIVSQYGDVEDFITV-PGQSDQQVRPFIKDYFGYDPDFMGVVAAVLAGFTVFFAFTYAYSIRTLNFQQR 1509          
BLAST of CX300823 vs. ExPASy Swiss-Prot
Match: AB29G_ARATH (ABC transporter G family member 29 OS=Arabidopsis thaliana GN=ABCG29 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 6.644e-23
Identity = 46/114 (40.35%), Postives = 71/114 (62.28%), Query Frame = 3
Query:    6 VAAIIAAPCYMLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSVPVKHLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 347
            VAA+ A   Y L+NLFSGF+I   RIP +W WYYW  P+AW++YGL  SQ+GD +  +K+        +K  +++ +G+  DF++    ++V F   FA +FA+ I+   FQ+R
Sbjct: 1303 VAAVFAGAFYGLFNLFSGFVIPRPRIPKWWIWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGMANDPTIKWYIENHYGYDADFMIPIATVLVGFTLFFAFMFAFGIRTLNFQQR 1416          
The following BLAST results are available for this feature:
BLAST of CX300823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
PDR2_ORYSJ1.294e-2646.09Probable pleiotropic drug resistance protein 2 OS=... [more]
AB40G_ARATH6.420e-2643.48ABC transporter G family member 40 OS=Arabidopsis ... [more]
PDR4_ORYSJ8.385e-2645.22Pleiotropic drug resistance protein 4 OS=Oryza sat... [more]
PDR2_NICPL1.868e-2542.98Pleiotropic drug resistance protein 2 OS=Nicotiana... [more]
AB35G_ARATH3.186e-2544.74ABC transporter G family member 35 OS=Arabidopsis ... [more]
AB36G_ARATH9.271e-2542.98ABC transporter G family member 36 OS=Arabidopsis ... [more]
PDR1_ORYSJ4.601e-2441.74Probable pleiotropic drug resistance protein 1 OS=... [more]
PDR5_ORYSJ1.748e-2340.35Pleiotropic drug resistance protein 5 OS=Oryza sat... [more]
PDR15_ORYSJ1.748e-2342.11Pleiotropic drug resistance protein 15 OS=Oryza sa... [more]
AB29G_ARATH6.644e-2340.35ABC transporter G family member 29 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC08002F04SK PhyRootSw1 Citrus sinensis cDNA clone C08002F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300823 ID=CX300823; Name=CX300823; organism=Citrus sinensis; type=EST; length=427bp
ATAATGTGGCTGCCATTATTGCTGCTCCCTGTTATATGCTTTGGAACCTT
TTCAGCGGCTTTATGATTGCCCACAAGAGAATTCCCATTTACTGGAGATG
GTATTACTGGGCGAACCCTATAGCATGGAGTCTGTACGGCCTCCAGACTT
CACAATTTGGTGACGACGATAAACTTGTGAAGCTTTCAGATGGAACTGGC
TCGGTTCCTGTGAAGCACTTACTGAAGGATGTGTTTGGGTTTAGGCATGA
TTTCTTGGTAATAGCCGGTGCTATGGTGGTTGCTTTCGCCACCATTTTTG
CAATGATATTTGCTTATGCAATAAAAGCCTTCAAGTTCCAAAAGAGATGA
CAAGGTGAAGGTGGCTTCATTTGTATGAGAACAAAGTCGCAAGTTCATCA
GTTTCCTCGTAGAAATGAAGTTTAAGA
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