CX043950

Overview
NameCX043950
Unique NameCX043950
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3P_CANFA (Glyceraldehyde-3-phosphate dehydrogenase OS=Canis familiaris GN=GAPDH PE=2 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 2.387e-21
Identity = 50/73 (68.49%), Postives = 58/73 (79.45%), Query Frame = -3
Query:  322 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 540
            K  SEG LKGILGYTED VVS DF  D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+V+M+  +
Sbjct:  261 KQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVYMASKE 333          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3PT_RAT (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Rattus norvegicus GN=Gapdhs PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.387e-21
Identity = 50/69 (72.46%), Postives = 57/69 (82.61%), Query Frame = -3
Query:  334 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 540
            KA ++G + GIL YTED VVS DF GDS SSIFDAKAGIAL+  FVKLVSWYDNE+GYS RVVDL+ +M
Sbjct:  359 KAAAKGPMAGILAYTEDQVVSTDFNGDSHSSIFDAKAGIALNDNFVKLVSWYDNEYGYSHRVVDLLRYM 427          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3P1_JACOR (Glyceraldehyde-3-phosphate dehydrogenase, muscle OS=Jaculus orientalis PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 2.387e-21
Identity = 50/73 (68.49%), Postives = 57/73 (78.08%), Query Frame = -3
Query:  322 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 540
            K   +G LKG+LGYTE  VVS DF GDS SS FDA AGIAL+  FVKLVSWYDNE+GYS RVVDL+VHM+  +
Sbjct:  291 KQACDGPLKGMLGYTEHQVVSSDFNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEFGYSNRVVDLMVHMASKE 363          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3P1_DROME (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Drosophila melanogaster GN=Gapdh1 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 2.387e-21
Identity = 46/66 (69.70%), Postives = 58/66 (87.88%), Query Frame = -3
Query:  334 SEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 531
            S+G LKGILGYT+++VVS DF  D+ SS+FDAKAGI+L+ KFVKL+SWYDNE+GYS RV+DLI +M
Sbjct:  263 SKGPLKGILGYTDEEVVSTDFFSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3P_TRIAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Trichoderma atroviride GN=gpd1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.118e-21
Identity = 45/71 (63.38%), Postives = 59/71 (83.10%), Query Frame = -3
Query:  328 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 540
            K  ++G+LKGI+ YT D+VVS D +G++ SSIFD KAGI+L+  FVKLVSWYDNEWGYS RV+DL+ H++K
Sbjct:  262 KKAADGELKGIMAYTSDEVVSTDMLGNNNSSIFDIKAGISLNPNFVKLVSWYDNEWGYSRRVLDLLEHVAK 332          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3PT_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Bos taurus GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.118e-21
Identity = 47/69 (68.12%), Postives = 58/69 (84.06%), Query Frame = -3
Query:  334 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 540
            KA ++G + GIL YTED+VVS DF+ D+ SSIFDAKAGIAL+  FVKL+SWYDNE+GYS RVVDL+ +M
Sbjct:  322 KAAAKGPMAGILAYTEDEVVSTDFLSDTHSSIFDAKAGIALNDNFVKLISWYDNEYGYSNRVVDLVRYM 390          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3P_RABIT (Glyceraldehyde-3-phosphate dehydrogenase OS=Oryctolagus cuniculus GN=GAPDH PE=1 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 4.072e-21
Identity = 50/73 (68.49%), Postives = 57/73 (78.08%), Query Frame = -3
Query:  322 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 540
            K  SEG LKGILGYTED VVS DF   + SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+VHM+  +
Sbjct:  261 KQASEGPLKGILGYTEDQVVSCDFNSATHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3PT_DANRE (Glyceraldehyde 3-phosphate dehydrogenase, testis-specific OS=Danio rerio GN=gapdhs PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.072e-21
Identity = 47/69 (68.12%), Postives = 57/69 (82.61%), Query Frame = -3
Query:  334 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 540
            K  + G +KGILGYTED VVS DFVGD+ SSIFDA AGI+L+  FVKL+SWYDNE+GYS RV DL+++M
Sbjct:  263 KKAAHGPMKGILGYTEDSVVSSDFVGDTHSSIFDAGAGISLNDNFVKLISWYDNEFGYSHRVADLLMYM 331          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3PC_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chlamydomonas reinhardtii GN=GAPC PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.072e-21
Identity = 47/71 (66.20%), Postives = 56/71 (78.87%), Query Frame = -3
Query:  328 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 540
            K  SEG++KG+L YT++DVVS DFV D  S   DAKAGI LS  FVKLV+WYDNEWGYS RVVDL +H++K
Sbjct:  265 KEASEGEMKGVLAYTDEDVVSSDFVTDPASCTVDAKAGIMLSPTFVKLVAWYDNEWGYSNRVVDLALHVAK 335          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3P2_DROPS (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila pseudoobscura pseudoobscura GN=Gapdh2 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 4.072e-21
Identity = 45/66 (68.18%), Postives = 58/66 (87.88%), Query Frame = -3
Query:  334 SEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 531
            + G LKGILGYT+++VVS DF+ D+ SS+FDAKAGI+L+ KFVKL+SWYDNE+GYS RV+DLI +M
Sbjct:  263 ANGPLKGILGYTDEEVVSTDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
The following BLAST results are available for this feature:
BLAST of CX043950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
G3P_CANFA2.387e-2168.49Glyceraldehyde-3-phosphate dehydrogenase OS=Canis ... [more]
G3PT_RAT2.387e-2172.46Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P1_JACOR2.387e-2168.49Glyceraldehyde-3-phosphate dehydrogenase, muscle O... [more]
G3P1_DROME2.387e-2169.70Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Dros... [more]
G3P_TRIAT3.118e-2163.38Glyceraldehyde-3-phosphate dehydrogenase OS=Tricho... [more]
G3PT_BOVIN3.118e-2168.12Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P_RABIT4.072e-2168.49Glyceraldehyde-3-phosphate dehydrogenase OS=Orycto... [more]
G3PT_DANRE4.072e-2168.12Glyceraldehyde 3-phosphate dehydrogenase, testis-s... [more]
G3PC_CHLRE4.072e-2166.20Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_DROPS4.072e-2168.18Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14E02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14E02-J4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043950 ID=CX043950; Name=CX043950; organism=Citrus sinensis; type=EST; length=542bp
TTTTTTTTTTTTTTTTTAACCGCTGAAGAACAGGTCTTCGATACTAACTA
GATGAAAAATTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTA
ACAAAACATAAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAA
TCTAAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGA
AACAATTTTATTTAAACTCAAACCCTCTACATAAAAACACAAACACCACA
TTTAGCACAAAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACT
CAAGCCACGCCGAGTAAGTTACTGGGTCTTCGACATGTGGACAATCAAAT
CCACCACACGAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGC
TTCACAAATTTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGATACT
TGACCTACTGTCACCAACAAAGTCGGGGGATACCACATCATCCTCAGTGT
ATCCCAAGATACCCTTTAGTTTCCCCTCTGACTCCGCCTTGA
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