CX043950

Overview
NameCX043950
Unique NameCX043950
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3P_STRAU (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces aureofaciens GN=gap PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.715e-11
Identity = 30/66 (45.45%), Postives = 47/66 (71.21%), Query Frame = -3
Query:  343 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLI 540
            +A ++G L G+L Y+ED +VS D  G+  SSIFD++    +  + +K+V+WYDNEWG+S RV+D +
Sbjct:  262 RAAAQGPLAGVLEYSEDPLVSSDITGNPASSIFDSEL-TRVDGRHIKVVAWYDNEWGFSNRVIDTL 326          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3P3_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap3 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 3.820e-11
Identity = 31/64 (48.44%), Postives = 44/64 (68.75%), Query Frame = -3
Query:  346 AESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDL 537
            A  +  L+GILGY E  +VS D+  D RSSI DA + + + +  VK+++WYDNEWGY  R+V+L
Sbjct:  265 ASEQAPLQGILGYEERPLVSIDYKDDPRSSIIDALSTMVVDETQVKILAWYDNEWGYVNRMVEL 328          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3P3_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anabaena sp. (strain PCC 7120) GN=gap3 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.820e-11
Identity = 31/64 (48.44%), Postives = 44/64 (68.75%), Query Frame = -3
Query:  346 AESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDL 537
            A  +  L+GILGY E  +VS D+  D RSSI DA + + + +  VK+++WYDNEWGY  R+V+L
Sbjct:  265 ASEQAPLQGILGYEERPLVSIDYKDDPRSSIIDALSTMVVDETQVKILAWYDNEWGYVNRMVEL 328          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3PA_GRAVE (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Gracilaria verrucosa GN=GAPA PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.989e-11
Identity = 28/62 (45.16%), Postives = 43/62 (69.35%), Query Frame = -3
Query:  346 SEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDL 531
            + G +KGI+ Y+++ +VS D+ G   S+I D+   + +    +K+V+WYDNEWGYS RVVDL
Sbjct:  346 ANGSMKGIIKYSDEPLVSCDYRGTDESTIIDSSLTMVMGDDMLKVVAWYDNEWGYSQRVVDL 407          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3P_SERMA (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Serratia marcescens GN=gap PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.516e-11
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = -3
Query:  394 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLV 540
            K  +EG +KG+LGY EDDVVS DF G+  +S+FDAKAGIAL+  FVKLV
Sbjct:  246 KDAAEGSMKGVLGYVEDDVVSTDFNGEVLTSVFDAKAGIALNDNFVKLV 294          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3P2_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Synechocystis sp. (strain PCC 6803) GN=gap2 PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 6.516e-11
Identity = 32/71 (45.07%), Postives = 44/71 (61.97%), Query Frame = -3
Query:  328 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 540
            K  +   LKG+L YT+ ++VS DF G   SS  D    + +    VK+++WYDNEWGYS RVVDL   ++K
Sbjct:  264 KEAANTSLKGVLEYTDLELVSSDFRGTDCSSTVDGSLTMVMGGDMVKVIAWYDNEWGYSQRVVDLAEIVAK 334          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: E4PD_SHEAM (D-erythrose-4-phosphate dehydrogenase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=epd PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.510e-11
Identity = 31/73 (42.47%), Postives = 46/73 (63.01%), Query Frame = -3
Query:  322 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 540
            KA ++G   GILGYT++ +VS DF  D RSS+ D       +   VK++ W DNEWG++ R++D  + M+ TQ
Sbjct:  264 KAAADGSASGILGYTDEPLVSCDFNHDPRSSVVDGTQTRVSAGHLVKMLLWCDNEWGFANRMLDTALAMAATQ 336          
The following BLAST results are available for this feature:
BLAST of CX043950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
G3P_STRAU1.715e-1145.45Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P3_ANAVT3.820e-1148.44Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anab... [more]
G3P3_ANASP3.820e-1148.44Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anab... [more]
G3PA_GRAVE4.989e-1145.16Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3P_SERMA6.516e-1165.31Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P2_SYNY36.516e-1145.07Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Syne... [more]
E4PD_SHEAM8.510e-1142.47D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14E02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14E02-J4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043950 ID=CX043950; Name=CX043950; organism=Citrus sinensis; type=EST; length=542bp
TTTTTTTTTTTTTTTTTAACCGCTGAAGAACAGGTCTTCGATACTAACTA
GATGAAAAATTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTA
ACAAAACATAAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAA
TCTAAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGA
AACAATTTTATTTAAACTCAAACCCTCTACATAAAAACACAAACACCACA
TTTAGCACAAAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACT
CAAGCCACGCCGAGTAAGTTACTGGGTCTTCGACATGTGGACAATCAAAT
CCACCACACGAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGC
TTCACAAATTTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGATACT
TGACCTACTGTCACCAACAAAGTCGGGGGATACCACATCATCCTCAGTGT
ATCCCAAGATACCCTTTAGTTTCCCCTCTGACTCCGCCTTGA
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