CX043950

Overview
NameCX043950
Unique NameCX043950
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3P_MONAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Monascus anka GN=GPD1 PE=3 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 5.139e-24
Identity = 52/71 (73.24%), Postives = 59/71 (83.10%), Query Frame = -3
Query:  328 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 540
            K  SEG LKG+LGYTEDDVVS D  GD  SSIFDAKAGIAL+  FVKLVSWYDNEWGYS RV+DLI ++++
Sbjct:  263 KEASEGPLKGVLGYTEDDVVSSDLNGDPHSSIFDAKAGIALNSNFVKLVSWYDNEWGYSRRVIDLIAYIAQ 333          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3P_ZYGRO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosaccharomyces rouxii PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.145e-23
Identity = 52/72 (72.22%), Postives = 61/72 (84.72%), Query Frame = -3
Query:  325 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKT 540
            K  SEG +KGILGYTEDDVVS DF+GD+ SSI DA AGI L+  FVKLVSWYDNE+GYSTRVVDL+ H++K+
Sbjct:  261 KKASEGSMKGILGYTEDDVVSSDFLGDAHSSIVDAAAGIQLTPTFVKLVSWYDNEFGYSTRVVDLVEHVAKS 332          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3P_COTJA (Glyceraldehyde-3-phosphate dehydrogenase OS=Coturnix coturnix japonica GN=GAPDH PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 1.495e-23
Identity = 54/73 (73.97%), Postives = 60/73 (82.19%), Query Frame = -3
Query:  322 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 540
            KA +EG LKGILGYTED VVS DF GDS SS FDA AGIAL+  FVKLVSWYDNE+GYS RVVDL+VHM+  +
Sbjct:  261 KAAAEGPLKGILGYTEDQVVSCDFNGDSHSSTFDAGAGIALNDNFVKLVSWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3P2_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schizosaccharomyces pombe GN=gpd3 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.495e-23
Identity = 51/68 (75.00%), Postives = 57/68 (83.82%), Query Frame = -3
Query:  337 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVH 540
            KA SEG +KG+LGYTED VVS DF GD+ SSIFDA AGI LS +FVKLVSWYDNEWGYS RVVDL+ +
Sbjct:  263 KAASEGPMKGVLGYTEDSVVSTDFCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSHRVVDLVAY 330          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3P_PARBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=GPD PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.953e-23
Identity = 51/71 (71.83%), Postives = 61/71 (85.92%), Query Frame = -3
Query:  328 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 540
            KA SEG+LKGILGY+ED +VS D  GD RSSIFDA AGIAL+ +FVKL+SWYDNEWGYS RV+DLI +++K
Sbjct:  263 KAASEGELKGILGYSEDALVSTDLNGDPRSSIFDASAGIALNDRFVKLISWYDNEWGYSRRVLDLIAYIAK 333          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3P_LENED (Glyceraldehyde-3-phosphate dehydrogenase OS=Lentinula edodes GN=gpd PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.953e-23
Identity = 51/71 (71.83%), Postives = 59/71 (83.10%), Query Frame = -3
Query:  328 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 540
            K  S+G LKGILGYTED VVS DF+GD+ SSIFDA AGI L+K FVKL++WYDNEWGYS RVVDL+V  +K
Sbjct:  262 KEASKGPLKGILGYTEDHVVSTDFIGDNHSSIFDATAGIQLNKNFVKLIAWYDNEWGYSGRVVDLLVFAAK 332          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3P_COLGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum gloeosporioides GN=GPDA PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.953e-23
Identity = 49/71 (69.01%), Postives = 59/71 (83.10%), Query Frame = -3
Query:  328 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 540
            K  +EG LKG+L YTEDDVVS D +G+  SSIFDAKAGI+L+  FVKLVSWYDNEWGYS RV+DL+ H++K
Sbjct:  263 KEAAEGPLKGVLAYTEDDVVSTDMIGNPNSSIFDAKAGISLNNNFVKLVSWYDNEWGYSRRVLDLLAHVAK 333          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3P1_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schizosaccharomyces pombe GN=tdh1 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.953e-23
Identity = 51/68 (75.00%), Postives = 57/68 (83.82%), Query Frame = -3
Query:  337 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVH 540
            KA SEG +KG+LGYTED VVS DF GD+ SSIFDA AGI LS +FVKLVSWYDNEWGYS RVVDL+ +
Sbjct:  263 KAASEGPMKGVLGYTEDAVVSTDFCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSRRVVDLVAY 330          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3P_SCHMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.550e-23
Identity = 53/71 (74.65%), Postives = 59/71 (83.10%), Query Frame = -3
Query:  328 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 540
            KA + G LKGIL YTED+VVS DFVG + SSIFDAKAGI+L+  FVKLVSWYDNE+GYS RVVDLI HM K
Sbjct:  264 KAAASGPLKGILEYTEDEVVSSDFVGSTSSSIFDAKAGISLNNNFVKLVSWYDNEFGYSCRVVDLITHMHK 334          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3P_AJECA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ajellomyces capsulata GN=GPD PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.550e-23
Identity = 51/71 (71.83%), Postives = 60/71 (84.51%), Query Frame = -3
Query:  328 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 540
            K  SEG+LKGILGY+ED +VS D  GDSRSSIFDA AGIAL+  F+KL+SWYDNEWGYS RVVDLI +++K
Sbjct:  262 KKASEGELKGILGYSEDALVSSDLNGDSRSSIFDASAGIALNDHFIKLISWYDNEWGYSRRVVDLIAYIAK 332          
The following BLAST results are available for this feature:
BLAST of CX043950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
G3P_MONAN5.139e-2473.24Glyceraldehyde-3-phosphate dehydrogenase OS=Monasc... [more]
G3P_ZYGRO1.145e-2372.22Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosa... [more]
G3P_COTJA1.495e-2373.97Glyceraldehyde-3-phosphate dehydrogenase OS=Coturn... [more]
G3P2_SCHPO1.495e-2375.00Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schi... [more]
G3P_PARBA1.953e-2371.83Glyceraldehyde-3-phosphate dehydrogenase OS=Paraco... [more]
G3P_LENED1.953e-2371.83Glyceraldehyde-3-phosphate dehydrogenase OS=Lentin... [more]
G3P_COLGL1.953e-2369.01Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3P1_SCHPO1.953e-2375.00Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schi... [more]
G3P_SCHMA2.550e-2374.65Glyceraldehyde-3-phosphate dehydrogenase OS=Schist... [more]
G3P_AJECA2.550e-2371.83Glyceraldehyde-3-phosphate dehydrogenase OS=Ajello... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14E02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14E02-J4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043950 ID=CX043950; Name=CX043950; organism=Citrus sinensis; type=EST; length=542bp
TTTTTTTTTTTTTTTTTAACCGCTGAAGAACAGGTCTTCGATACTAACTA
GATGAAAAATTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTA
ACAAAACATAAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAA
TCTAAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGA
AACAATTTTATTTAAACTCAAACCCTCTACATAAAAACACAAACACCACA
TTTAGCACAAAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACT
CAAGCCACGCCGAGTAAGTTACTGGGTCTTCGACATGTGGACAATCAAAT
CCACCACACGAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGC
TTCACAAATTTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGATACT
TGACCTACTGTCACCAACAAAGTCGGGGGATACCACATCATCCTCAGTGT
ATCCCAAGATACCCTTTAGTTTCCCCTCTGACTCCGCCTTGA
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