CX300777

Overview
NameCX300777
Unique NameCX300777
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length405
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300777 vs. ExPASy Swiss-Prot
Match: RS15_SULSO (30S ribosomal protein S15P/S13e OS=Sulfolobus solfataricus GN=rps15p PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.791e-28
Identity = 63/122 (51.64%), Postives = 84/122 (68.85%), Query Frame = 1
Query:   34 KGISKSALPYKRTPPSWLKVTATQVEDQVNKLAKRGLTPSQIGVILRDSHGVAQVKSVTGNKVLRILKKSGLAPAIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYR 399
            KG S S  P +   P W+++T  +VE  V +LAKRG TPS IG+ILRD +G+  VK + G KV +IL++ GLAP IPEDL+ LI+KAV VR+H+    +DK +K  L  IES+I RL RYY+
Sbjct:    7 KGKSHSIRPARAGAPKWVRLTREEVEMLVEELAKRGYTPSMIGIILRDQYGIPLVKQIVGKKVTQILEERGLAPQIPEDLFNLIRKAVNVRRHINEYPRDKTAKKGLEEIESKIRRLTRYYK 128          
BLAST of CX300777 vs. ExPASy Swiss-Prot
Match: RS15_PYRAR (30S ribosomal protein S15P/S13e OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps15p PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.804e-28
Identity = 58/122 (47.54%), Postives = 86/122 (70.49%), Query Frame = 1
Query:   34 KGISKSALPYKRTPPSWLKVTATQVEDQVNKLAKRGLTPSQIGVILRDSHGVAQVKSVTGNKVLRILKKSGLAPAIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYR 399
            KG S S  P   T P+W++ T  +VE    +LA+RG  PSQIG++LRD +G+  VKS+TG K++++L++ G+   IPEDL  LI++A+ +RKHLE + KD  S+  L L+ES+IHRL +YY+
Sbjct:   12 KGRSGSVRPAHPTVPTWIQYTPEEVEQLAVELARRGFQPSQIGIVLRDQYGIPLVKSITGKKLVKVLEEHGIKYEIPEDLLNLIRRALRIRKHLEEHPKDMSSRRGLQLVESKIHRLIKYYK 133          
BLAST of CX300777 vs. ExPASy Swiss-Prot
Match: RS15_CALMQ (30S ribosomal protein S15P/S13e OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps15p PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.516e-27
Identity = 61/122 (50.00%), Postives = 83/122 (68.03%), Query Frame = 1
Query:   34 KGISKSALPYKRTPPSWLKVTATQVEDQVNKLAKRGLTPSQIGVILRDSHGVAQVKSVTGNKVLRILKKSGLAPAIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYR 399
            +G S S  P  +T P WL  +   VE  V +LA+RG TPS IGVILRD +G+  VK VT  ++  IL+++GL P IPEDL  LI++AV +R+HLE + KD  +K  L+L ES+IHRL +YY+
Sbjct:    9 RGSSGSVRPATKTIPPWLSYSPEDVERLVVELARRGFTPSLIGVILRDQYGIPLVKIVTNKRITEILEENGLKPQIPEDLMALIRRAVNIRRHLEEHPKDMSAKKGLLLTESKIHRLIKYYK 130          
BLAST of CX300777 vs. ExPASy Swiss-Prot
Match: RS15_PYRAE (30S ribosomal protein S15P/S13e OS=Pyrobaculum aerophilum GN=rps15p PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.586e-27
Identity = 58/122 (47.54%), Postives = 86/122 (70.49%), Query Frame = 1
Query:   34 KGISKSALPYKRTPPSWLKVTATQVEDQVNKLAKRGLTPSQIGVILRDSHGVAQVKSVTGNKVLRILKKSGLAPAIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYR 399
            KG S+S  P   T P+W++ T  +VE  V +LA+RG  PSQIG+ILRD +G+  V+ +TG K+ +IL++ G+   +PEDL  LI++A+ +RKHLE + KD  S+  L L+ES+IHRL +YY+
Sbjct:    9 KGRSRSVRPAHPTVPTWIQYTPEEVEQLVVELARRGFQPSQIGLILRDQYGIPLVRPITGKKLTKILEEHGIKYELPEDLLNLIRRALRIRKHLEEHPKDMASRRGLQLVESKIHRLVKYYK 130          
BLAST of CX300777 vs. ExPASy Swiss-Prot
Match: RS15_SULTO (30S ribosomal protein S15P/S13e OS=Sulfolobus tokodaii GN=rps15p PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.377e-27
Identity = 63/130 (48.46%), Postives = 87/130 (66.92%), Query Frame = 1
Query:   10 MGRMHSSGKGISKSALPYKRTPPSWLKVTATQVEDQVNKLAKRGLTPSQIGVILRDSHGVAQVKSVTGNKVLRILKKSGLAPAIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYR 399
            M +   +GK  S S  P +   P W++ T  +VE  V +LAK+G +PS IG+ILRD +G+  VK +TG K+ +IL++ GLAP IPEDL+ LI+KA  VR+HL  + KDK +K  L  IES+I RLA YY+
Sbjct:    1 MNKKRPNGK--SHSTRPVRSGAPKWVRFTREEVELLVEELAKKGYSPSMIGIILRDQYGIPLVKQITGKKLTKILEEKGLAPKIPEDLFNLIRKAANVRRHLFEHPKDKRAKKGLEEIESKIRRLADYYK 128          
BLAST of CX300777 vs. ExPASy Swiss-Prot
Match: RS15_PYRCJ (30S ribosomal protein S15P/S13e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps15p PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.377e-27
Identity = 58/122 (47.54%), Postives = 84/122 (68.85%), Query Frame = 1
Query:   34 KGISKSALPYKRTPPSWLKVTATQVEDQVNKLAKRGLTPSQIGVILRDSHGVAQVKSVTGNKVLRILKKSGLAPAIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYR 399
            KG S S  P   T P+W++ T  +VE    +LA+RG  PSQIG+ILRD +G+  VK +TG K+ +IL++ G+   +PEDL  LI++A+ +RKHLE + KD  S+  L L+ES+IHRL +YY+
Sbjct:    9 KGRSSSVRPPHPTVPTWIQYTPEEVEQLAVELARRGFPPSQIGIILRDQYGIPLVKPITGKKLTKILEEHGIKQELPEDLLNLIRRALRIRKHLEEHPKDMASRRGLQLVESKIHRLIKYYK 130          
BLAST of CX300777 vs. ExPASy Swiss-Prot
Match: RS15_METAC (30S ribosomal protein S15P/S13e OS=Methanosarcina acetivorans GN=rps15p PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.377e-27
Identity = 61/130 (46.92%), Postives = 85/130 (65.38%), Query Frame = 1
Query:   10 MGRMHSSGKGISKSALPYKRTPPSWLKVTATQVEDQVNKLAKRGLTPSQIGVILRDSHGVAQVKSVTGNKVLRILKKSGLAPAIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYR 399
            M +MH+  KG S S  P +  PP W K+ A +V   V  L K+G++ ++IG++LRD +GV   K +TG KV  ILK++ +AP IPEDL  LI KA+ +RKHL  N+KD  +K  L L ES+I RL +YY+
Sbjct:    1 MAKMHTKRKGKSSSTRPIRTDPPEWCKIGADEVTTIVLDLWKQGVSTAEIGMVLRDRYGVPDAKLITGKKVTTILKENNVAPNIPEDLTNLIVKALGLRKHLSVNKKDVHNKRSLNLTESKIRRLVKYYK 130          
BLAST of CX300777 vs. ExPASy Swiss-Prot
Match: RS15_METMA (30S ribosomal protein S15P/S13e OS=Methanosarcina mazei GN=rps15p PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.410e-27
Identity = 61/130 (46.92%), Postives = 84/130 (64.62%), Query Frame = 1
Query:   10 MGRMHSSGKGISKSALPYKRTPPSWLKVTATQVEDQVNKLAKRGLTPSQIGVILRDSHGVAQVKSVTGNKVLRILKKSGLAPAIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYR 399
            M +MH+  KG S S  P +  PP W K+ A +V      L K+G++ S+IG+ILRD +GV   K VTG K+  ILK++ +AP +PEDL  LI KA+ +RKHL  N+KD  +K  L L ES+I RL +YY+
Sbjct:    1 MAKMHTKRKGKSSSTRPNRTEPPEWCKIGADEVTTITLDLWKQGVSTSEIGMILRDRYGVPDAKLVTGKKITTILKENNVAPNLPEDLTNLIVKALGLRKHLSTNKKDVHNKRALNLTESKIRRLVKYYK 130          
BLAST of CX300777 vs. ExPASy Swiss-Prot
Match: RS15_METLZ (30S ribosomal protein S15P/S13e OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps15p PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.410e-27
Identity = 57/129 (44.19%), Postives = 87/129 (67.44%), Query Frame = 1
Query:   10 MGRMHSSGKGISKSALPYKRTPPSWLKVTATQVEDQVNKLAKRGLTPSQIGVILRDSHGVAQVKSVTGNKVLRILKKSGLAPAIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYY 396
            M RMH+  +GI+ S  PY++  P+W      ++E ++ +L K GLT +QIG++LRD HGV  VK  TG ++  I++++ L   IPEDL  L+ KA+ +RKHLE+NRKD  +K +L L E+++ RL +YY
Sbjct:    1 MARMHARRRGIASSVRPYRKEVPAWSNSDVKEIEGKIVELRKAGLTCAQIGLVLRDKHGVPNVKLATGKRINAIVRENDLDTDIPEDLRNLMHKALMMRKHLEQNRKDLHNKRQLQLTEAKVRRLVKYY 129          
BLAST of CX300777 vs. ExPASy Swiss-Prot
Match: RS15_STAMF (30S ribosomal protein S15P/S13e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps15p PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.825e-27
Identity = 61/124 (49.19%), Postives = 87/124 (70.16%), Query Frame = 1
Query:   34 KGISKSALPYKRTPPSWLKV--TATQVEDQVNKLAKRGLTPSQIGVILRDSHGVAQVKSVTGNKVLRILKKSGLAPAIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYR 399
            KG S S  P +  PP WLK+  + + +E  V +LAK+G TPS IG+ILRD +GV  VK VTG K+++IL+K G+   +PEDL  L++KAV +R+HLE + KD  +K  L+ +ES+IHRL +YY+
Sbjct:    7 KGQSHSTRPARAGPPRWLKLDMSPSDIELLVVELAKKGYTPSMIGIILRDQYGVPLVKQVTGKKLVQILEKHGIKLPVPEDLLFLMRKAVNLRRHLEEHPKDFHAKKGLLDLESKIHRLVKYYK 130          
The following BLAST results are available for this feature:
BLAST of CX300777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS15_SULSO1.791e-2851.6430S ribosomal protein S15P/S13e OS=Sulfolobus solf... [more]
RS15_PYRAR6.804e-2847.5430S ribosomal protein S15P/S13e OS=Pyrobaculum ars... [more]
RS15_CALMQ1.516e-2750.0030S ribosomal protein S15P/S13e OS=Caldivirga maqu... [more]
RS15_PYRAE2.586e-2747.5430S ribosomal protein S15P/S13e OS=Pyrobaculum aer... [more]
RS15_SULTO3.377e-2748.4630S ribosomal protein S15P/S13e OS=Sulfolobus toko... [more]
RS15_PYRCJ3.377e-2747.5430S ribosomal protein S15P/S13e OS=Pyrobaculum cal... [more]
RS15_METAC3.377e-2746.9230S ribosomal protein S15P/S13e OS=Methanosarcina ... [more]
RS15_METMA4.410e-2746.9230S ribosomal protein S15P/S13e OS=Methanosarcina ... [more]
RS15_METLZ4.410e-2744.1930S ribosomal protein S15P/S13e OS=Methanocorpuscu... [more]
RS15_STAMF9.825e-2749.1930S ribosomal protein S15P/S13e OS=Staphylothermus... [more]

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Properties
Property NameValue
Genbank descriptionC08002B06SK PhyRootSw1 Citrus sinensis cDNA clone C08002B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300777 ID=CX300777; Name=CX300777; organism=Citrus sinensis; type=EST; length=405bp
TTAGAGAAGATGGGACGCATGCACTCTTCCGGAAAAGGGATTTCCAAATC
CGCCCTTCCATACAAACGAACTCCTCCTTCCTGGCTTAAGGTAACTGCCA
CCCAAGTCGAGGATCAAGTCAATAAGCTTGCCAAGCGTGGTTTAACTCCA
TCTCAAATTGGTGTTATCTTACGTGACTCTCATGGTGTTGCTCAAGTGAA
GAGCGTGACTGGTAACAAGGTTCTCAGAATTTTAAAGAAATCTGGATTAG
CTCCAGCTATCCCAGAAGATTTATATATGCTTATCAAGAAGGCTGTCGCC
GTCAGAAAGCACCTTGAAAGAAATAGAAAAGATAAGGACTCTAAGTTCAG
ATTAATCTTAATCGAGAGCAGAATCCACAGATTGGCTCGTTACTACCGTG
CTTCT
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