CN189855

Overview
NameCN189855
Unique NameCN189855
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189855 vs. ExPASy Swiss-Prot
Match: E13L3_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 3 OS=Arabidopsis thaliana GN=At5g08000 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.808e-16
Identity = 36/88 (40.91%), Postives = 53/88 (60.23%), Query Frame = -1
Query:  261 TWCVANANAGEKKLQAAIDYACGEGGADCRPIQEGATCYDPNTLEAHASYAFNSYYQKQVRKAGSCDFGGAAYVVTQAPKYGKCQFPT 524
            +WCV      +  LQ  +DYACG G ADC P     +C++P+ + AH +YA NS++QK+ + + SC+F G A + T  P Y  C FP+
Sbjct:   20 SWCVCKTGLSDSVLQKTLDYACGNG-ADCNPTHPKGSCFNPDNVRAHCNYAVNSFFQKKGQASESCNFTGTATLTTTDPSYTGCAFPS 106          
BLAST of CN189855 vs. ExPASy Swiss-Prot
Match: EA6_ARATH (Probable glucan endo-1,3-beta-glucosidase A6 OS=Arabidopsis thaliana GN=A6 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.531e-15
Identity = 43/152 (28.29%), Postives = 70/152 (46.05%), Query Frame = -1
Query:  261 NQKPGPTSERNYGLFYPNEQTVYDSPFVSTSGNSSSTPAANKSKTQXXXXXXXXXXXXXXXXGQTWCVANANAGEKKLQAAIDYACGEGGADCRPIQEGATCYDPNTLEAHASYAFNSYYQKQVRKAGSCDFGGAAYVVTQAPKYGKCQFPT 716
            NQK G  ++R++G+ +P+   +YD  F   +  +   P    +                   GQ WCV    A E +L+  +  AC +    C  +  G  CY+P ++  HASYA NSY+ +   ++  C F G A+  T  P   +C+FP+
Sbjct:  337 NQKSGSGTQRHWGILHPDGSPIYDVDFTGQTPLTGFNPLPKPTNN-------------VPYKGQVWCVPVEGANETELEETLRMACAQSNTTCAALAPGRECYEPVSIYWHASYALNSYWAQFRNQSIQCFFNGLAHETTTNPGNDRCKFPS 475          
BLAST of CN189855 vs. ExPASy Swiss-Prot
Match: E13L4_ARATH (Glucan endo-1,3-beta-glucosidase-like protein At1g69295 OS=Arabidopsis thaliana GN=At1g69295 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.433e-13
Identity = 37/69 (53.62%), Postives = 42/69 (60.87%), Query Frame = -1
Query:  288 EKKLQAAIDYACGEGGADCRPIQEGATCYDPNTLEAHASYAFNSYYQKQVRKAGSCDFGGAAYVVTQAP 494
            E+ LQ AIDYACG G ADC  IQ    CY PNT++ H   A NSYYQK+     +CDF GAA   T  P
Sbjct:   29 EQVLQKAIDYACGNG-ADCTQIQPTGACYQPNTVKNHCDVAVNSYYQKKASSGATCDFNGAASPSTTPP 96          
The following BLAST results are available for this feature:
BLAST of CN189855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
E13L3_ARATH1.808e-1640.91Glucan endo-1,3-beta-glucosidase-like protein 3 OS... [more]
EA6_ARATH1.531e-1528.29Probable glucan endo-1,3-beta-glucosidase A6 OS=Ar... [more]
E13L4_ARATH1.433e-1353.62Glucan endo-1,3-beta-glucosidase-like protein At1g... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002I10_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002I10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189855 ID=CN189855; Name=CN189855; organism=Citrus sinensis; type=EST; length=716bp
AATAATGGACTAAATTCATAATCATTAGAATAAATACAATAAGGATTTGA
TCATATTGACACTAGAGTCAAACCAACTGATAACAACCGCACCCACTCAG
CGTACTAGTATATAAAATTTAAATACAAGGGAGAAAAATTAATGTTCCAA
TCGTCTAAATCTATCAGAAAAAATCATCACCAATCGTAAGCCGCGAGAAA
GCTCCAAATCTGCAGACCACAAATCAGCTAATGCTCCCTATTTTTTCCCA
CTCAATAGCCAGTTGGGAACTGGCATTTTCCATATTTAGGAGCCTGCGTG
ACCACGTAGGCCGCACCACCAAAATCACAAGATCCAGCCTTACGCACTTG
CTTCTGATAATAACTATTGAAGGCATACGATGCATGGGCTTCTAACGTGT
TAGGATCGTAACACGTGGCGCCCTCTTGAATCGGACGGCAATCAGCGCCT
CCCTCGCCGCAGGCATAATCAATTGCGGCTTGCAACTTTTTCTCACCAGC
ATTCGCGTTAGCCACGCACCAAGTCTGTCCCGCCGCCGAGGGCGACACGT
CACCACCGCCTCCTCCGCTCACCGGAACTTGAGTCTTGCTCTTATTGGCT
GCCGGCGTTGAGCTTGAGTTCCCACTAGTTGACACAAACGGCGAGTCGTA
CACCGTCTGTTCGTTGGGATAAAACAACCCGTAATTCCTTTCCGATGTGG
GACCCGGTTTTTGATT
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