CN189847

Overview
NameCN189847
Unique NameCN189847
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ACTA_PHYPO (Actin, plasmodial isoform OS=Physarum polycephalum GN=ARDA PE=1 SV=2)

HSP 1 Score: 265.388 bits (677), Expect = 2.297e-70
Identity = 124/139 (89.21%), Postives = 134/139 (96.40%), Query Frame = 1 
Query:    4 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 420
            EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+AGIHETTYNSIMKCDVDIRKDLYGN+VLSGG+TMFPGIADRM KE+TALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  238 EKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMQKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 376
[Close]
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ACT4_ARATH (Actin-4 OS=Arabidopsis thaliana GN=ACT4 PE=1 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 2.297e-70
Identity = 128/139 (92.09%), Postives = 134/139 (96.40%), Query Frame = 1 
Query:    4 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 420
            EK++ELPDGQ+ITIGAERFRCPEVLFQPS+IGME  GIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMF GI DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  239 EKSFELPDGQVITIGAERFRCPEVLFQPSMIGMENPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFGGIGDRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ACT12_ARATH (Actin-12 OS=Arabidopsis thaliana GN=ACT12 PE=1 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 2.297e-70
Identity = 128/139 (92.09%), Postives = 134/139 (96.40%), Query Frame = 1 
Query:    4 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 420
            EK++ELPDGQ+ITIGAERFRCPEVLFQPS+IGME  GIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMF GI DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  239 EKSFELPDGQVITIGAERFRCPEVLFQPSMIGMENPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFGGIGDRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ACT22_DICDI (Putative actin-22 OS=Dictyostelium discoideum GN=act22 PE=3 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 8.730e-70
Identity = 123/139 (88.49%), Postives = 135/139 (97.12%), Query Frame = 1 
Query:    4 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 420
            EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+AGIHETT+NSIMKCDVDIRKDLYGN+VLSGG+TMFPGIADRM+KE+T+LAPS+MKIK+VAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  238 EKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTFNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTSLAPSTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 376
[Close]
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ACT_MESVI (Actin OS=Mesostigma viride PE=3 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.489e-69
Identity = 126/139 (90.65%), Postives = 132/139 (94.96%), Query Frame = 1 
Query:    4 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 420
            EK+YELPDGQ+ITIG ERFRCPEVLF P  +GME+AGIHETTYNSIM+CDVDIRKDLYGNIVLSGGSTM PGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQ MWI+K EYDESGPSIVHRKCF
Sbjct:  239 EKSYELPDGQVITIGNERFRCPEVLFNPGYVGMESAGIHETTYNSIMRCDVDIRKDLYGNIVLSGGSTMXPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQAMWIAKSEYDESGPSIVHRKCF 377
[Close]
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ACTC_BIOOB (Actin, cytoplasmic OS=Biomphalaria obstructa PE=3 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.489e-69
Identity = 125/139 (89.93%), Postives = 131/139 (94.24%), Query Frame = 1 
Query:    4 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 420
            EK+YELPDGQ+ITIG ERFRCPE LFQPS +GMEAAGIHETTYNSIMKCDVDIRKDLY N VLSGGSTMFPGIADRM KEITALAP +MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  238 EKSYELPDGQVITIGNERFRCPEALFQPSFLGMEAAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ACT3_DICDI (Actin-3 OS=Dictyostelium discoideum GN=act3 PE=3 SV=3)

HSP 1 Score: 262.692 bits (670), Expect = 1.489e-69
Identity = 123/139 (88.49%), Postives = 133/139 (95.68%), Query Frame = 1 
Query:    4 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 420
            EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+AGIHETTYNSIMKCDVDIRKDLY N+VLSGGSTMFPGIADRM+KE+TALAPS+MKIK++APPERKYSVWIGGSILASL TFQQMWISK EYDESGPSIVHRKCF
Sbjct:  238 EKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYSNVVLSGGSTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLPTFQQMWISKEEYDESGPSIVHRKCF 376
[Close]
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ACT_CHLRE (Actin OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.540e-69
Identity = 125/139 (89.93%), Postives = 133/139 (95.68%), Query Frame = 1 
Query:    4 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 420
            EK YELPDGQ+ITIG ERFRCPEVLF P++IGMEA GIH+TT+NSIMKCDVDIRKDLY NIVLSGG+TMFPGIADRMSKEITALAPS+MKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  239 EKTYELPDGQMITIGNERFRCPEVLFNPNMIGMEAVGIHDTTFNSIMKCDVDIRKDLYNNIVLSGGTTMFPGIADRMSKEITALAPSAMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 377
[Close]
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ACTC_BIOTE (Actin, cytoplasmic OS=Biomphalaria tenagophila PE=3 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.540e-69
Identity = 124/139 (89.21%), Postives = 131/139 (94.24%), Query Frame = 1 
Query:    4 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 420
            EK+YELPDGQ+ITIG ERFRCPE +FQPS +GMEAAGIHETTYNSIMKCDVDIRKDLY N VLSGGSTMFPGIADRM KEITALAP +MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  238 EKSYELPDGQVITIGNERFRCPEAMFQPSFLGMEAAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CN189847 vs. ExPASy Swiss-Prot
Match: ACTC_BIOAL (Actin, cytoplasmic OS=Biomphalaria alexandrina PE=3 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.540e-69
Identity = 124/139 (89.21%), Postives = 131/139 (94.24%), Query Frame = 1 
Query:    4 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 420
            EK+YELPDGQ+ITIG ERFRCPE +FQPS +GMEAAGIHETTYNSIMKCDVDIRKDLY N VLSGGSTMFPGIADRM KEITALAP +MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  238 EKSYELPDGQVITIGNERFRCPEAMFQPSFLGMEAAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
The following BLAST results are available for this feature:
BLAST of CN189847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 479
Match NameE-valueIdentityDescription
ACTA_PHYPO2.297e-7089.21Actin, plasmodial isoform OS=Physarum polycephalum... [more]
ACT4_ARATH2.297e-7092.09Actin-4 OS=Arabidopsis thaliana GN=ACT4 PE=1 SV=1[more]
ACT12_ARATH2.297e-7092.09Actin-12 OS=Arabidopsis thaliana GN=ACT12 PE=1 SV=... [more]
ACT22_DICDI8.730e-7088.49Putative actin-22 OS=Dictyostelium discoideum GN=a... [more]
ACT_MESVI1.489e-6990.65Actin OS=Mesostigma viride PE=3 SV=1[more]
ACTC_BIOOB1.489e-6989.93Actin, cytoplasmic OS=Biomphalaria obstructa PE=3 ... [more]
ACT3_DICDI1.489e-6988.49Actin-3 OS=Dictyostelium discoideum GN=act3 PE=3 S... [more]
ACT_CHLRE2.540e-6989.93Actin OS=Chlamydomonas reinhardtii PE=2 SV=1[more]
ACTC_BIOTE2.540e-6989.21Actin, cytoplasmic OS=Biomphalaria tenagophila PE=... [more]
ACTC_BIOAL2.540e-6989.21Actin, cytoplasmic OS=Biomphalaria alexandrina PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002I06_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002I06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189847 ID=CN189847; Name=CN189847; organism=Citrus sinensis; type=EST; length=736bp
GAGGAGAAGAACTATGAGCTGCCTGATGGCCAGATCATCACCATTGGAGC
TGAAAGATTCCGTTGCCCAGAAGTTCTGTTCCAGCCATCTCTCATCGGAA
TGGAAGCTGCTGGTATTCATGAGACTACCTACAACTCCATCATGAAGTGT
GATGTGGATATTAGAAAGGATCTGTATGGTAACATTGTTCTCAGTGGGGG
TTCAACTATGTTCCCTGGTATTGCCGACCGTATGAGCAAGGAAATCACAG
CACTTGCTCCAAGCAGCATGAAGATCAAGGTCGTGGCTCCACCAGAGAGA
AAATACAGTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTT
CCAGCAGATGTGGATCTCAAAGGGCGAGTATGATGAGTCTGGTCCATCCA
TTGTCCACAGGAAATGCTTCTAAGTTCTTTAAGTGCTTGATGGGTGAGTT
CTTTTTTTCCATTTAGTTGGTTTTTTGTGTCTCGTTTCGCGAACTCAAGT
TGGTTGACATGGAGAAGTGCTAAGGATGGGGCCATTGAAGGAGGCATATC
TCGATATTGATGTTATTATACAAGCTTCTTACAGCGTTTGAGGGGGGCTT
ATTTCTGTACTCAACCATCTTCCTTGCCTTGCATTCATCTGGTGTTCAAC
CAAGTCTTTTTTCTTTTTTTTCCTTTTTTTTTATTTTAAGTAGGATGTTT
GTAGCTGGAGATGAAGAGTGGTTGTGATGCTTTTCT
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